Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03860 and DDA3937_RS03870 are separated by 556 nucleotides DDA3937_RS03870 and DDA3937_RS03875 are separated by 594 nucleotides
DDA3937_RS03860: DDA3937_RS03860 - site-specific integrase, at 859,910 to 861,085
_RS03860
DDA3937_RS03870: DDA3937_RS03870 - DNA repair protein RadC, at 861,642 to 862,151
_RS03870
DDA3937_RS03875: DDA3937_RS03875 - DUF736 domain-containing protein, at 862,746 to 863,057
_RS03875
Position (kb) 861
862
863 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 860.687 kb on + strand, within DDA3937_RS03860 at 860.688 kb on - strand, within DDA3937_RS03860 at 860.698 kb on + strand, within DDA3937_RS03860 at 860.698 kb on + strand, within DDA3937_RS03860 at 860.699 kb on - strand, within DDA3937_RS03860 at 860.699 kb on - strand, within DDA3937_RS03860 at 860.715 kb on - strand, within DDA3937_RS03860 at 860.715 kb on - strand, within DDA3937_RS03860 at 860.731 kb on + strand, within DDA3937_RS03860 at 860.770 kb on + strand, within DDA3937_RS03860 at 860.771 kb on - strand, within DDA3937_RS03860 at 860.784 kb on + strand, within DDA3937_RS03860 at 860.784 kb on + strand, within DDA3937_RS03860 at 860.784 kb on + strand, within DDA3937_RS03860 at 860.784 kb on + strand, within DDA3937_RS03860 at 860.784 kb on + strand, within DDA3937_RS03860 at 860.784 kb on + strand, within DDA3937_RS03860 at 860.784 kb on + strand, within DDA3937_RS03860 at 860.797 kb on - strand, within DDA3937_RS03860 at 860.803 kb on + strand, within DDA3937_RS03860 at 860.841 kb on - strand, within DDA3937_RS03860 at 860.862 kb on + strand, within DDA3937_RS03860 at 860.862 kb on + strand, within DDA3937_RS03860 at 860.871 kb on + strand, within DDA3937_RS03860 at 860.871 kb on + strand, within DDA3937_RS03860 at 860.871 kb on + strand, within DDA3937_RS03860 at 860.871 kb on + strand, within DDA3937_RS03860 at 860.871 kb on + strand, within DDA3937_RS03860 at 860.872 kb on - strand, within DDA3937_RS03860 at 860.872 kb on - strand, within DDA3937_RS03860 at 860.929 kb on - strand, within DDA3937_RS03860 at 860.989 kb on + strand at 860.991 kb on + strand at 860.991 kb on + strand at 860.991 kb on + strand at 860.991 kb on + strand at 860.991 kb on + strand at 860.991 kb on + strand at 860.992 kb on - strand at 860.992 kb on - strand at 860.992 kb on - strand at 860.995 kb on + strand at 860.995 kb on + strand at 860.995 kb on + strand at 860.995 kb on + strand at 860.995 kb on + strand at 860.996 kb on - strand at 860.996 kb on - strand at 861.041 kb on + strand at 861.041 kb on + strand at 861.041 kb on + strand at 861.041 kb on + strand at 861.042 kb on - strand at 861.043 kb on + strand at 861.043 kb on + strand at 861.043 kb on + strand at 861.043 kb on + strand at 861.043 kb on + strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.044 kb on - strand at 861.137 kb on - strand at 861.139 kb on + strand at 861.160 kb on + strand at 861.218 kb on + strand at 861.293 kb on + strand at 861.293 kb on + strand at 861.294 kb on - strand at 861.294 kb on - strand at 861.358 kb on + strand at 861.421 kb on + strand at 861.421 kb on + strand at 861.421 kb on + strand at 861.422 kb on - strand at 861.422 kb on - strand at 861.422 kb on - strand at 861.424 kb on - strand at 861.424 kb on - strand at 861.424 kb on - strand at 861.424 kb on - strand at 861.432 kb on - strand at 861.432 kb on - strand at 861.440 kb on + strand at 861.440 kb on + strand at 861.440 kb on + strand at 861.440 kb on + strand at 861.441 kb on - strand at 861.441 kb on - strand at 861.441 kb on - strand at 861.441 kb on - strand at 861.441 kb on - strand at 861.441 kb on - strand at 861.503 kb on + strand at 861.635 kb on + strand at 861.705 kb on + strand, within DDA3937_RS03870 at 861.754 kb on + strand, within DDA3937_RS03870 at 861.754 kb on + strand, within DDA3937_RS03870 at 861.755 kb on - strand, within DDA3937_RS03870 at 861.755 kb on - strand, within DDA3937_RS03870 at 861.772 kb on + strand, within DDA3937_RS03870 at 861.810 kb on + strand, within DDA3937_RS03870 at 861.810 kb on + strand, within DDA3937_RS03870 at 861.811 kb on - strand, within DDA3937_RS03870 at 861.811 kb on - strand, within DDA3937_RS03870 at 861.891 kb on + strand at 861.891 kb on + strand, within DDA3937_RS03870 at 861.892 kb on - strand, within DDA3937_RS03870 at 861.920 kb on + strand, within DDA3937_RS03870 at 861.934 kb on - strand at 862.013 kb on + strand, within DDA3937_RS03870 at 862.144 kb on + strand at 862.145 kb on - strand at 862.323 kb on + strand at 862.323 kb on + strand at 862.385 kb on + strand at 862.385 kb on + strand at 862.386 kb on - strand at 862.386 kb on - strand at 862.386 kb on - strand at 862.386 kb on - strand at 862.386 kb on - strand at 862.386 kb on - strand at 862.504 kb on + strand at 862.504 kb on + strand at 862.505 kb on - strand at 862.505 kb on - strand at 862.505 kb on - strand at 862.505 kb on - strand at 862.505 kb on - strand at 862.751 kb on + strand at 862.752 kb on - strand at 862.893 kb on + strand, within DDA3937_RS03875 at 862.941 kb on + strand, within DDA3937_RS03875 at 862.942 kb on - strand, within DDA3937_RS03875 at 862.942 kb on - strand, within DDA3937_RS03875 at 862.942 kb on - strand, within DDA3937_RS03875 at 862.942 kb on - strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.987 kb on - strand, within DDA3937_RS03875 at 862.987 kb on - strand at 862.987 kb on - strand, within DDA3937_RS03875 at 863.019 kb on + strand at 863.019 kb on + strand, within DDA3937_RS03875 at 863.019 kb on + strand, within DDA3937_RS03875 at 863.019 kb on + strand, within DDA3937_RS03875 at 863.019 kb on + strand, within DDA3937_RS03875 at 863.019 kb on + strand, within DDA3937_RS03875 at 863.019 kb on + strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 860,687 + DDA3937_RS03860 0.66 +0.5 860,688 - DDA3937_RS03860 0.66 -1.5 860,698 + DDA3937_RS03860 0.67 -2.3 860,698 + DDA3937_RS03860 0.67 -0.8 860,699 - DDA3937_RS03860 0.67 +1.5 860,699 - DDA3937_RS03860 0.67 +0.4 860,715 - DDA3937_RS03860 0.68 -0.1 860,715 - DDA3937_RS03860 0.68 +0.2 860,731 + DDA3937_RS03860 0.70 -1.3 860,770 + DDA3937_RS03860 0.73 -1.2 860,771 - DDA3937_RS03860 0.73 -0.2 860,784 + DDA3937_RS03860 0.74 +0.8 860,784 + DDA3937_RS03860 0.74 -0.6 860,784 + DDA3937_RS03860 0.74 -0.3 860,784 + DDA3937_RS03860 0.74 +1.6 860,784 + DDA3937_RS03860 0.74 +1.5 860,784 + DDA3937_RS03860 0.74 -0.7 860,784 + DDA3937_RS03860 0.74 -0.9 860,797 - DDA3937_RS03860 0.75 -1.7 860,803 + DDA3937_RS03860 0.76 -0.2 860,841 - DDA3937_RS03860 0.79 -0.1 860,862 + DDA3937_RS03860 0.81 -1.0 860,862 + DDA3937_RS03860 0.81 -0.4 860,871 + DDA3937_RS03860 0.82 -1.7 860,871 + DDA3937_RS03860 0.82 +0.2 860,871 + DDA3937_RS03860 0.82 +0.8 860,871 + DDA3937_RS03860 0.82 +0.3 860,871 + DDA3937_RS03860 0.82 -0.4 860,872 - DDA3937_RS03860 0.82 -0.8 860,872 - DDA3937_RS03860 0.82 -0.3 860,929 - DDA3937_RS03860 0.87 +1.0 860,989 + -0.8 860,991 + +0.8 860,991 + +0.1 860,991 + +0.7 860,991 + -2.2 860,991 + -1.0 860,991 + -0.4 860,992 - -1.4 860,992 - +0.3 860,992 - -0.5 860,995 + +0.6 860,995 + -1.7 860,995 + -0.5 860,995 + +0.9 860,995 + +0.5 860,996 - +1.8 860,996 - -0.8 861,041 + +0.3 861,041 + +1.5 861,041 + -0.1 861,041 + +0.5 861,042 - -0.3 861,043 + +0.2 861,043 + -0.3 861,043 + -1.1 861,043 + +2.8 861,043 + +0.1 861,044 - -0.6 861,044 - -0.5 861,044 - -0.7 861,044 - -0.8 861,044 - +1.3 861,044 - -0.3 861,044 - +2.1 861,044 - +0.5 861,044 - -0.3 861,044 - -0.3 861,044 - -0.3 861,044 - -1.1 861,137 - +1.5 861,139 + -1.3 861,160 + +0.0 861,218 + +1.5 861,293 + +0.6 861,293 + -0.7 861,294 - -0.3 861,294 - -0.1 861,358 + +0.4 861,421 + +0.9 861,421 + +2.0 861,421 + -0.8 861,422 - +3.0 861,422 - -0.4 861,422 - -0.2 861,424 - +1.4 861,424 - -1.7 861,424 - -0.2 861,424 - -0.1 861,432 - -0.2 861,432 - +1.9 861,440 + -0.8 861,440 + -0.1 861,440 + +1.3 861,440 + +0.2 861,441 - +0.3 861,441 - -2.4 861,441 - -2.4 861,441 - +1.1 861,441 - +0.0 861,441 - -1.9 861,503 + -0.6 861,635 + +0.4 861,705 + DDA3937_RS03870 0.12 +0.7 861,754 + DDA3937_RS03870 0.22 +2.2 861,754 + DDA3937_RS03870 0.22 +0.2 861,755 - DDA3937_RS03870 0.22 -1.7 861,755 - DDA3937_RS03870 0.22 +0.9 861,772 + DDA3937_RS03870 0.25 -1.3 861,810 + DDA3937_RS03870 0.33 +0.5 861,810 + DDA3937_RS03870 0.33 -0.0 861,811 - DDA3937_RS03870 0.33 -0.3 861,811 - DDA3937_RS03870 0.33 -0.5 861,891 + -0.8 861,891 + DDA3937_RS03870 0.49 -0.1 861,892 - DDA3937_RS03870 0.49 -1.2 861,920 + DDA3937_RS03870 0.55 -1.3 861,934 - +2.2 862,013 + DDA3937_RS03870 0.73 +2.0 862,144 + +0.3 862,145 - +0.6 862,323 + -2.1 862,323 + -1.2 862,385 + +0.8 862,385 + -0.0 862,386 - +0.3 862,386 - +0.0 862,386 - +0.0 862,386 - -0.8 862,386 - -0.1 862,386 - -0.7 862,504 + +0.1 862,504 + +4.7 862,505 - +1.1 862,505 - +0.6 862,505 - -2.4 862,505 - +1.2 862,505 - +0.7 862,751 + +1.5 862,752 - +0.5 862,893 + DDA3937_RS03875 0.47 -0.7 862,941 + DDA3937_RS03875 0.62 -0.1 862,942 - DDA3937_RS03875 0.63 +0.9 862,942 - DDA3937_RS03875 0.63 -0.5 862,942 - DDA3937_RS03875 0.63 +0.0 862,942 - DDA3937_RS03875 0.63 -0.8 862,986 + DDA3937_RS03875 0.77 +0.4 862,986 + DDA3937_RS03875 0.77 -0.2 862,986 + DDA3937_RS03875 0.77 -1.1 862,986 + DDA3937_RS03875 0.77 -0.5 862,986 + DDA3937_RS03875 0.77 -0.9 862,986 + DDA3937_RS03875 0.77 -0.4 862,987 - DDA3937_RS03875 0.77 -0.8 862,987 - +1.5 862,987 - DDA3937_RS03875 0.77 -0.1 863,019 + +0.7 863,019 + DDA3937_RS03875 0.88 +4.2 863,019 + DDA3937_RS03875 0.88 +0.5 863,019 + DDA3937_RS03875 0.88 -1.8 863,019 + DDA3937_RS03875 0.88 -1.8 863,019 + DDA3937_RS03875 0.88 +2.1 863,019 + DDA3937_RS03875 0.88 -0.1 863,020 - DDA3937_RS03875 0.88 -0.3 863,020 - DDA3937_RS03875 0.88 +1.5 863,020 - DDA3937_RS03875 0.88 -2.4 863,020 - DDA3937_RS03875 0.88 -1.5 863,020 - DDA3937_RS03875 0.88 -0.1 863,020 - DDA3937_RS03875 0.88 +0.1 863,020 - DDA3937_RS03875 0.88 +1.7 863,020 - DDA3937_RS03875 0.88 -0.9 863,020 - DDA3937_RS03875 0.88 -2.2 863,151 + +1.5
Or see this region's nucleotide sequence