Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19580

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,450,299	-		DDA3937_RS19575	0.24	+0.6
4,450,495	+		DDA3937_RS19575	0.46	-2.1
4,450,495	+		DDA3937_RS19575	0.46	-1.3
4,450,496	-		DDA3937_RS19575	0.46	-1.1
4,450,496	-		DDA3937_RS19575	0.46	+0.6
4,450,498	+		DDA3937_RS19575	0.47	+0.2
4,450,498	+		DDA3937_RS19575	0.47	-0.6
4,450,499	-		DDA3937_RS19575	0.47	+0.5
4,450,588	+		DDA3937_RS19575	0.57	-0.4
4,450,589	-		DDA3937_RS19575	0.57	-0.4
4,450,672	+		DDA3937_RS19575	0.66	+0.5
4,450,673	-		DDA3937_RS19575	0.66	-0.6
4,450,674	+		DDA3937_RS19575	0.66	+1.0
4,450,674	+		DDA3937_RS19575	0.66	-0.6
4,450,674	+		DDA3937_RS19575	0.66	-0.9
4,450,675	-		DDA3937_RS19575	0.66	-0.3
4,450,760	+		DDA3937_RS19575	0.76	-2.0
4,450,807	+		DDA3937_RS19575	0.81	+0.4
4,450,808	-		DDA3937_RS19575	0.81	-3.0
4,450,829	+		DDA3937_RS19575	0.84	-1.9
4,450,829	+		DDA3937_RS19575	0.84	+0.4
4,450,829	+		DDA3937_RS19575	0.84	+0.7
4,450,829	+		DDA3937_RS19575	0.84	-1.3
4,450,830	-		DDA3937_RS19575	0.84	+1.5
4,450,830	-		DDA3937_RS19575	0.84	+1.6
4,450,830	-		DDA3937_RS19575	0.84	-2.4
4,450,830	-		DDA3937_RS19575	0.84	+1.2
4,450,844	+		DDA3937_RS19575	0.85	-0.3
4,450,844	+		DDA3937_RS19575	0.85	+0.2
4,450,845	-		DDA3937_RS19575	0.85	+0.5
4,450,845	-		DDA3937_RS19575	0.85	+0.6
4,450,911	-				-1.3
4,450,927	+				-0.2
4,450,927	+				+1.5
4,450,927	+				-0.3
4,450,928	-				+1.6
4,451,003	-				-1.3
4,451,003	-				+0.3
4,451,003	-				-1.9
4,451,003	-				-1.8
4,451,210	+				-1.0
4,451,210	+				-2.1
4,451,210	+				+0.1
4,451,211	-				-1.0
4,451,213	-				+0.9
4,451,213	-				+1.0
4,451,213	-				+0.2
4,451,213	-				+1.3
4,451,235	+				-0.4
4,451,235	+				-0.3
4,451,235	+				-0.7
4,451,236	-				+0.1
4,451,236	-				+0.3
4,451,236	-				+4.6
4,451,237	+				-1.9
4,451,237	+				+0.1
4,451,237	+				-1.0
4,451,238	-				+0.3
4,451,238	-				-0.0
4,451,238	-				+0.9
4,451,240	+				+0.1
4,451,255	+				-2.3
4,451,256	-				+0.5
4,451,257	+				-0.5
4,451,258	-				-0.1
4,451,258	-				+1.1
4,451,258	-				+0.5
4,451,262	+				-0.8
4,451,262	+				-0.9
4,451,262	+				-1.1
4,451,273	+				-0.6
4,451,303	+				-2.5
4,451,303	+				+1.1
4,451,303	+				-0.1
4,451,304	-				+0.5
4,451,308	+				-0.1
4,451,308	+				+1.1
4,451,309	-				-0.5
4,451,309	-				-0.1
4,451,312	+				-0.0
4,451,312	+				+0.3
4,451,312	+				-0.3
4,451,312	+				+0.1
4,451,312	+				+7.4
4,451,313	-				+1.5
4,451,313	-				-0.5
4,451,313	-				+0.6
4,451,313	-				-0.0
4,451,313	-				-0.1
4,451,313	-				+0.5
4,451,313	-				+0.1
4,451,359	+				+0.1
4,451,360	-				+0.6
4,451,374	+				+1.3
4,451,374	+				+1.5
4,451,375	-				-1.1
4,451,375	-				-1.7
4,451,375	-				-2.5
4,451,375	-				-0.3
4,451,375	-				+0.1
4,451,375	-				+0.1
4,451,376	+				+2.9
4,451,444	-				+0.8
4,451,709	+		DDA3937_RS19580	0.16	+2.4
4,451,779	+		DDA3937_RS19580	0.19	-0.1
4,451,780	-		DDA3937_RS19580	0.19	+0.6
4,451,780	-		DDA3937_RS19580	0.19	+0.7
4,451,794	+		DDA3937_RS19580	0.20	+2.7
4,451,794	+		DDA3937_RS19580	0.20	-0.2
4,451,794	+		DDA3937_RS19580	0.20	+0.3
4,451,794	+		DDA3937_RS19580	0.20	-0.5
4,451,795	-		DDA3937_RS19580	0.20	+1.3
4,451,795	-		DDA3937_RS19580	0.20	+1.4
4,451,812	+		DDA3937_RS19580	0.20	+0.1
4,451,813	-		DDA3937_RS19580	0.20	-0.4
4,451,839	+		DDA3937_RS19580	0.21	+1.5
4,451,840	-		DDA3937_RS19580	0.21	+2.4
4,451,840	-		DDA3937_RS19580	0.21	-1.3
4,451,840	-		DDA3937_RS19580	0.21	+0.5
4,451,929	+		DDA3937_RS19580	0.25	+0.4
4,451,929	+		DDA3937_RS19580	0.25	-0.6
4,451,930	-		DDA3937_RS19580	0.25	+0.6
4,451,936	-		DDA3937_RS19580	0.25	-0.6
4,451,992	+		DDA3937_RS19580	0.27	+1.1
4,451,992	+		DDA3937_RS19580	0.27	+0.0
4,451,993	-		DDA3937_RS19580	0.27	+0.2
4,451,993	-		DDA3937_RS19580	0.27	+0.8
4,452,011	-		DDA3937_RS19580	0.28	+1.2
4,452,011	-		DDA3937_RS19580	0.28	-0.5
4,452,011	-		DDA3937_RS19580	0.28	-2.5
4,452,011	-		DDA3937_RS19580	0.28	+0.2
4,452,079	+		DDA3937_RS19580	0.31	-0.1
4,452,080	-		DDA3937_RS19580	0.31	+2.5
4,452,080	-		DDA3937_RS19580	0.31	+1.9
4,452,080	-		DDA3937_RS19580	0.31	+0.0
4,452,133	+		DDA3937_RS19580	0.33	+0.4
4,452,133	+		DDA3937_RS19580	0.33	+5.5
4,452,133	+		DDA3937_RS19580	0.33	-0.6
4,452,133	+		DDA3937_RS19580	0.33	-0.5
4,452,134	-		DDA3937_RS19580	0.33	+0.9
4,452,134	-		DDA3937_RS19580	0.33	+0.5
4,452,134	-		DDA3937_RS19580	0.33	+1.3
4,452,134	-		DDA3937_RS19580	0.33	+0.3
4,452,134	-		DDA3937_RS19580	0.33	+2.5
4,452,134	-		DDA3937_RS19580	0.33	+2.8
4,452,134	-		DDA3937_RS19580	0.33	+0.3
4,452,134	-		DDA3937_RS19580	0.33	+2.1
4,452,134	-		DDA3937_RS19580	0.33	+0.2
4,452,134	-		DDA3937_RS19580	0.33	+0.6
4,452,135	+		DDA3937_RS19580	0.33	-0.1
4,452,136	-		DDA3937_RS19580	0.33	-0.4
4,452,154	+		DDA3937_RS19580	0.34	-0.8
4,452,205	-		DDA3937_RS19580	0.36	+1.1
4,452,221	-		DDA3937_RS19580	0.36	+0.2
4,452,294	+		DDA3937_RS19580	0.39	+1.4
4,452,294	+		DDA3937_RS19580	0.39	+0.2
4,452,295	-		DDA3937_RS19580	0.39	-0.8
4,452,295	-		DDA3937_RS19580	0.39	+1.4
4,452,413	+		DDA3937_RS19580	0.44	+0.6
4,452,414	-		DDA3937_RS19580	0.44	+1.2
4,452,446	-		DDA3937_RS19580	0.45	-0.2
4,452,706	+		DDA3937_RS19580	0.55	-0.3
4,452,706	+		DDA3937_RS19580	0.55	+1.1
4,452,706	+		DDA3937_RS19580	0.55	-0.1
4,452,707	-		DDA3937_RS19580	0.55	-2.0
4,452,707	-		DDA3937_RS19580	0.55	+1.1
4,452,707	-		DDA3937_RS19580	0.55	-0.7
4,452,707	-		DDA3937_RS19580	0.55	+1.1
4,452,707	-		DDA3937_RS19580	0.55	-0.9
4,452,707	-		DDA3937_RS19580	0.55	+0.9
4,452,707	-		DDA3937_RS19580	0.55	-0.6
4,452,823	+		DDA3937_RS19580	0.60	-1.7
4,452,823	+		DDA3937_RS19580	0.60	-0.2
4,452,823	+		DDA3937_RS19580	0.60	-0.3
4,452,824	-		DDA3937_RS19580	0.60	+0.5
4,452,864	+		DDA3937_RS19580	0.61	+4.4
4,452,865	-		DDA3937_RS19580	0.61	-0.4
4,452,910	+		DDA3937_RS19580	0.63	+1.9
4,452,911	-		DDA3937_RS19580	0.63	+0.1
4,452,911	-		DDA3937_RS19580	0.63	-0.1
4,452,954	+		DDA3937_RS19580	0.65	+0.2
4,452,954	+		DDA3937_RS19580	0.65	+5.7
4,452,955	-		DDA3937_RS19580	0.65	+2.9
4,452,955	-		DDA3937_RS19580	0.65	+0.6
4,452,955	-		DDA3937_RS19580	0.65	+2.6
4,452,959	+		DDA3937_RS19580	0.65	+1.9
4,452,959	+		DDA3937_RS19580	0.65	-2.9
4,452,959	+		DDA3937_RS19580	0.65	-0.2
4,452,959	+		DDA3937_RS19580	0.65	+1.1
4,452,959	+		DDA3937_RS19580	0.65	+1.5
4,452,959	+		DDA3937_RS19580	0.65	-0.3
4,452,959	+		DDA3937_RS19580	0.65	-0.3
4,452,959	+		DDA3937_RS19580	0.65	+0.5
4,452,959	+		DDA3937_RS19580	0.65	+5.9
4,452,959	+		DDA3937_RS19580	0.65	+0.7
4,452,960	-				+0.7
4,452,960	-		DDA3937_RS19580	0.65	-0.5
4,452,960	-		DDA3937_RS19580	0.65	-0.8
4,452,960	-		DDA3937_RS19580	0.65	-0.9
4,452,960	-		DDA3937_RS19580	0.65	-2.1
4,452,960	-		DDA3937_RS19580	0.65	-1.5
4,452,964	-		DDA3937_RS19580	0.65	+2.6
4,452,964	-		DDA3937_RS19580	0.65	+1.8
4,452,964	-		DDA3937_RS19580	0.65	+3.1
4,453,060	+		DDA3937_RS19580	0.69	-1.9
4,453,061	-		DDA3937_RS19580	0.69	+0.1
4,453,131	+		DDA3937_RS19580	0.72	+0.3
4,453,154	-		DDA3937_RS19580	0.73	-0.6
4,453,162	-		DDA3937_RS19580	0.73	-0.3
4,453,356	+		DDA3937_RS19580	0.81	-0.0
4,453,356	+		DDA3937_RS19580	0.81	+1.0
4,453,356	+		DDA3937_RS19580	0.81	+0.4
4,453,357	-		DDA3937_RS19580	0.81	+1.2
4,453,357	-		DDA3937_RS19580	0.81	+0.7
4,453,357	-		DDA3937_RS19580	0.81	+1.2
4,453,357	-		DDA3937_RS19580	0.81	+1.0
4,453,357	-		DDA3937_RS19580	0.81	+0.5
4,453,357	-		DDA3937_RS19580	0.81	-0.3
4,453,357	-		DDA3937_RS19580	0.81	+1.8
4,453,357	-				-0.1
4,453,357	-		DDA3937_RS19580	0.81	+1.6
4,453,357	-		DDA3937_RS19580	0.81	+0.2
4,453,480	+		DDA3937_RS19580	0.85	-0.7
4,453,629	+				+3.4
4,453,629	+				+0.3
4,453,630	-				-1.7
4,453,630	-				+1.1
4,453,630	-				+0.0
4,453,753	+				+2.3
4,453,753	+				-0.1
4,453,754	-				+0.0
4,453,754	-				+0.1
4,453,759	-				+0.8
4,453,819	-				-1.1
4,453,881	+				-0.8
4,453,881	+				-0.4
4,453,882	-				-1.1
4,453,882	-				-0.8
4,453,915	+				-2.9
4,454,326	-		DDA3937_RS19585	0.61	-0.5
4,454,326	-		DDA3937_RS19585	0.61	+0.4
4,454,346	+		DDA3937_RS19585	0.64	-1.2
4,454,419	+		DDA3937_RS19585	0.78	-1.7
4,454,419	+		DDA3937_RS19585	0.78	-0.8
4,454,420	-		DDA3937_RS19585	0.78	-1.0
4,454,420	-		DDA3937_RS19585	0.78	-0.8
4,454,420	-		DDA3937_RS19585	0.78	+0.0
4,454,420	-		DDA3937_RS19585	0.78	+2.0
4,454,420	-		DDA3937_RS19585	0.78	-0.5
4,454,420	-		DDA3937_RS19585	0.78	-2.5
4,454,449	+		DDA3937_RS19585	0.83	+0.4
4,454,534	-				+0.9
4,454,534	-				-0.5
4,454,534	-				-0.5
4,454,536	+				-0.5
4,454,536	+				-0.1
4,454,536	+				+0.2
4,454,536	+				+0.3
4,454,536	+				+0.8
4,454,537	-				-2.4
4,454,537	-				-0.7
4,454,537	-				-0.8
4,454,537	-				-1.0
4,454,552	+				+1.0
4,454,553	-				-1.8
4,454,553	-				+0.9
4,454,553	-				-1.4
4,454,554	+				-0.1
4,454,639	-				+0.4
4,454,639	-				-0.5
4,454,669	-				-0.8
4,454,674	+				-1.8
4,454,675	-				+0.5
4,454,675	-				-0.3
4,454,675	-				-1.5
4,454,687	-				-0.5
4,454,687	-				-0.5
4,454,687	-				-1.7
4,454,700	+				+3.2
4,454,701	-				-1.3
4,454,708	-				+0.5
4,454,720	+				-2.7
4,454,721	-				-1.5
4,454,721	-				+2.7
4,454,739	+				+0.5
4,454,769	+				-1.5
4,454,770	-				-1.2
4,454,776	-				+0.5
4,454,776	-				+0.4
4,454,817	-				-0.8
4,454,830	+				-0.3
4,454,830	+				-0.7
4,454,836	-				-0.2
4,454,851	+				+3.4
4,454,851	+				-0.9
4,454,851	+				-1.2