Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03720

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS03715 and DDA3937_RS03720 are separated by 17 nucleotidesDDA3937_RS03720 and DDA3937_RS03725 are separated by 54 nucleotides DDA3937_RS03715: DDA3937_RS03715 - ABC transporter permease, at 821,998 to 823,032 _RS03715 DDA3937_RS03720: DDA3937_RS03720 - Gfo/Idh/MocA family oxidoreductase, at 823,050 to 824,183 _RS03720 DDA3937_RS03725: DDA3937_RS03725 - 5-dehydro-2-deoxygluconokinase, at 824,238 to 826,223 _RS03725 Position (kb) 823 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 822.190 kb on + strand, within DDA3937_RS03715at 822.191 kb on - strand, within DDA3937_RS03715at 822.290 kb on - strand, within DDA3937_RS03715at 822.621 kb on + strand, within DDA3937_RS03715at 822.621 kb on + strand, within DDA3937_RS03715at 822.621 kb on + strand, within DDA3937_RS03715at 822.621 kb on + strand, within DDA3937_RS03715at 822.622 kb on - strand, within DDA3937_RS03715at 822.622 kb on - strand, within DDA3937_RS03715at 822.695 kb on + strand, within DDA3937_RS03715at 822.695 kb on + strand, within DDA3937_RS03715at 822.695 kb on + strand, within DDA3937_RS03715at 822.696 kb on - strand, within DDA3937_RS03715at 822.718 kb on + strand, within DDA3937_RS03715at 822.719 kb on - strand, within DDA3937_RS03715at 822.719 kb on - strand, within DDA3937_RS03715at 822.719 kb on - strand, within DDA3937_RS03715at 822.719 kb on - strand, within DDA3937_RS03715at 822.946 kb on + strandat 822.947 kb on - strandat 822.947 kb on - strandat 822.949 kb on + strandat 822.950 kb on - strandat 822.961 kb on - strandat 823.000 kb on - strandat 823.004 kb on - strandat 823.004 kb on - strandat 823.086 kb on + strandat 823.134 kb on + strandat 823.134 kb on + strandat 823.134 kb on + strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.292 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.482 kb on - strand, within DDA3937_RS03720at 823.539 kb on + strand, within DDA3937_RS03720at 823.634 kb on + strand, within DDA3937_RS03720at 823.634 kb on + strand, within DDA3937_RS03720at 823.644 kb on + strand, within DDA3937_RS03720at 823.645 kb on - strand, within DDA3937_RS03720at 823.645 kb on - strand, within DDA3937_RS03720at 823.669 kb on + strand, within DDA3937_RS03720at 823.669 kb on + strand, within DDA3937_RS03720at 823.669 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.877 kb on + strand, within DDA3937_RS03720at 823.877 kb on + strand, within DDA3937_RS03720at 823.909 kb on - strand, within DDA3937_RS03720at 824.237 kb on + strandat 824.237 kb on + strandat 824.237 kb on + strandat 824.238 kb on - strandat 824.270 kb on + strandat 824.271 kb on - strandat 824.271 kb on - strandat 824.271 kb on - strandat 824.346 kb on + strandat 824.346 kb on + strandat 824.376 kb on + strandat 824.568 kb on + strand, within DDA3937_RS03725at 824.576 kb on + strand, within DDA3937_RS03725at 824.577 kb on - strand, within DDA3937_RS03725at 824.622 kb on + strand, within DDA3937_RS03725at 824.622 kb on + strand, within DDA3937_RS03725at 824.622 kb on + strandat 824.622 kb on + strand, within DDA3937_RS03725at 824.622 kb on + strand, within DDA3937_RS03725at 824.622 kb on + strand, within DDA3937_RS03725at 824.622 kb on + strand, within DDA3937_RS03725at 824.623 kb on - strand, within DDA3937_RS03725at 824.623 kb on - strand, within DDA3937_RS03725at 824.915 kb on - strand, within DDA3937_RS03725at 825.002 kb on + strand, within DDA3937_RS03725at 825.030 kb on - strand, within DDA3937_RS03725at 825.109 kb on - strand, within DDA3937_RS03725at 825.113 kb on - strand, within DDA3937_RS03725at 825.144 kb on + strand, within DDA3937_RS03725

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
822,190 + DDA3937_RS03715 0.19 -1.1
822,191 - DDA3937_RS03715 0.19 -0.3
822,290 - DDA3937_RS03715 0.28 -0.7
822,621 + DDA3937_RS03715 0.60 -1.3
822,621 + DDA3937_RS03715 0.60 -1.6
822,621 + DDA3937_RS03715 0.60 +0.2
822,621 + DDA3937_RS03715 0.60 -0.1
822,622 - DDA3937_RS03715 0.60 +0.0
822,622 - DDA3937_RS03715 0.60 -0.1
822,695 + DDA3937_RS03715 0.67 -1.4
822,695 + DDA3937_RS03715 0.67 +0.0
822,695 + DDA3937_RS03715 0.67 +0.7
822,696 - DDA3937_RS03715 0.67 -2.0
822,718 + DDA3937_RS03715 0.70 -1.8
822,719 - DDA3937_RS03715 0.70 -1.1
822,719 - DDA3937_RS03715 0.70 +1.0
822,719 - DDA3937_RS03715 0.70 -0.2
822,719 - DDA3937_RS03715 0.70 +1.3
822,946 + +0.2
822,947 - +0.3
822,947 - -3.0
822,949 + -1.4
822,950 - +0.1
822,961 - -0.3
823,000 - +0.6
823,004 - +0.5
823,004 - +0.2
823,086 + -1.0
823,134 + -1.1
823,134 + -1.6
823,134 + -1.5
823,135 - +0.6
823,135 - -0.2
823,135 - -0.3
823,135 - -0.4
823,135 - -1.1
823,135 - -0.5
823,135 - +1.0
823,292 + DDA3937_RS03720 0.21 -0.4
823,443 + DDA3937_RS03720 0.35 +1.9
823,443 + DDA3937_RS03720 0.35 -0.5
823,443 + DDA3937_RS03720 0.35 -0.7
823,443 + DDA3937_RS03720 0.35 -1.0
823,443 + DDA3937_RS03720 0.35 -1.8
823,444 - DDA3937_RS03720 0.35 -1.6
823,444 - DDA3937_RS03720 0.35 -0.1
823,444 - DDA3937_RS03720 0.35 +0.0
823,444 - DDA3937_RS03720 0.35 -1.0
823,444 - DDA3937_RS03720 0.35 -1.8
823,444 - DDA3937_RS03720 0.35 -1.3
823,482 - DDA3937_RS03720 0.38 +0.6
823,539 + DDA3937_RS03720 0.43 -0.9
823,634 + DDA3937_RS03720 0.51 -0.9
823,634 + DDA3937_RS03720 0.51 -0.1
823,644 + DDA3937_RS03720 0.52 +1.0
823,645 - DDA3937_RS03720 0.52 +1.0
823,645 - DDA3937_RS03720 0.52 -1.0
823,669 + DDA3937_RS03720 0.55 -2.2
823,669 + DDA3937_RS03720 0.55 -3.6
823,669 + DDA3937_RS03720 0.55 -0.2
823,842 + DDA3937_RS03720 0.70 +0.9
823,842 + DDA3937_RS03720 0.70 -0.2
823,842 + DDA3937_RS03720 0.70 +2.6
823,842 + DDA3937_RS03720 0.70 -0.4
823,842 + DDA3937_RS03720 0.70 -0.6
823,842 + DDA3937_RS03720 0.70 -0.5
823,842 + DDA3937_RS03720 0.70 +0.7
823,842 + DDA3937_RS03720 0.70 -1.3
823,843 - DDA3937_RS03720 0.70 +0.6
823,843 - DDA3937_RS03720 0.70 -2.7
823,843 - DDA3937_RS03720 0.70 -1.3
823,843 - DDA3937_RS03720 0.70 -0.6
823,843 - DDA3937_RS03720 0.70 -2.7
823,843 - DDA3937_RS03720 0.70 -0.2
823,877 + DDA3937_RS03720 0.73 +1.1
823,877 + DDA3937_RS03720 0.73 -0.4
823,909 - DDA3937_RS03720 0.76 -0.6
824,237 + +0.1
824,237 + -2.2
824,237 + -0.2
824,238 - +0.0
824,270 + -1.2
824,271 - -0.9
824,271 - -1.0
824,271 - +2.1
824,346 + -0.8
824,346 + -1.4
824,376 + +1.0
824,568 + DDA3937_RS03725 0.17 -1.2
824,576 + DDA3937_RS03725 0.17 -0.1
824,577 - DDA3937_RS03725 0.17 -1.1
824,622 + DDA3937_RS03725 0.19 -0.3
824,622 + DDA3937_RS03725 0.19 -0.4
824,622 + +2.0
824,622 + DDA3937_RS03725 0.19 -0.7
824,622 + DDA3937_RS03725 0.19 +0.3
824,622 + DDA3937_RS03725 0.19 +0.0
824,622 + DDA3937_RS03725 0.19 +0.4
824,623 - DDA3937_RS03725 0.19 +0.6
824,623 - DDA3937_RS03725 0.19 +0.5
824,915 - DDA3937_RS03725 0.34 -1.3
825,002 + DDA3937_RS03725 0.38 +0.5
825,030 - DDA3937_RS03725 0.40 +0.4
825,109 - DDA3937_RS03725 0.44 -1.5
825,113 - DDA3937_RS03725 0.44 +1.0
825,144 + DDA3937_RS03725 0.46 +1.7

Or see this region's nucleotide sequence