Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02160 and DDA3937_RS02165 are separated by 2 nucleotides DDA3937_RS02165 and DDA3937_RS02170 are separated by 13 nucleotides DDA3937_RS02170 and DDA3937_RS02175 are separated by 92 nucleotides
DDA3937_RS02160: DDA3937_RS02160 - transketolase, at 480,179 to 480,982
_RS02160
DDA3937_RS02165: DDA3937_RS02165 - transketolase, at 480,985 to 481,905
_RS02165
DDA3937_RS02170: DDA3937_RS02170 - D-threitol dehydrogenase, at 481,919 to 482,722
_RS02170
DDA3937_RS02175: DDA3937_RS02175 - D-ribose ABC transporter substrate-binding protein, at 482,815 to 483,750
_RS02175
Position (kb) 480
481
482 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.175 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.225 kb on - strand at 480.299 kb on - strand, within DDA3937_RS02160 at 480.299 kb on - strand, within DDA3937_RS02160 at 480.761 kb on - strand, within DDA3937_RS02160 at 480.875 kb on - strand, within DDA3937_RS02160 at 480.995 kb on + strand at 481.055 kb on + strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.059 kb on - strand at 481.059 kb on - strand at 481.261 kb on + strand at 481.262 kb on - strand, within DDA3937_RS02165 at 481.262 kb on - strand at 481.338 kb on + strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.453 kb on + strand, within DDA3937_RS02165 at 481.453 kb on + strand at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.456 kb on - strand at 481.682 kb on - strand, within DDA3937_RS02165 at 481.707 kb on - strand, within DDA3937_RS02165 at 481.707 kb on - strand, within DDA3937_RS02165 at 481.750 kb on - strand, within DDA3937_RS02165 at 481.804 kb on - strand, within DDA3937_RS02165 at 481.810 kb on - strand, within DDA3937_RS02165 at 481.869 kb on - strand at 481.937 kb on + strand at 481.938 kb on - strand at 481.938 kb on - strand at 482.178 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.353 kb on + strand, within DDA3937_RS02170 at 482.384 kb on - strand, within DDA3937_RS02170 at 482.435 kb on + strand, within DDA3937_RS02170 at 482.504 kb on - strand, within DDA3937_RS02170 at 482.504 kb on - strand, within DDA3937_RS02170 at 482.837 kb on + strand at 482.838 kb on - strand at 482.838 kb on - strand at 482.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 480,175 - +0.3 480,187 - +1.2 480,187 - -0.2 480,187 - +0.1 480,187 - -0.9 480,225 - -0.1 480,299 - DDA3937_RS02160 0.15 -1.0 480,299 - DDA3937_RS02160 0.15 +0.2 480,761 - DDA3937_RS02160 0.72 -1.6 480,875 - DDA3937_RS02160 0.87 +0.0 480,995 + -0.4 481,055 + -0.2 481,056 - -0.8 481,056 - +0.3 481,056 - +1.4 481,056 - +0.2 481,056 - +0.4 481,059 - -0.4 481,059 - -0.6 481,261 + -0.4 481,262 - DDA3937_RS02165 0.30 -0.1 481,262 - +1.0 481,338 + DDA3937_RS02165 0.38 +1.7 481,339 - DDA3937_RS02165 0.38 -0.7 481,339 - DDA3937_RS02165 0.38 +0.5 481,339 - DDA3937_RS02165 0.38 -0.1 481,339 - DDA3937_RS02165 0.38 +0.6 481,339 - DDA3937_RS02165 0.38 +1.7 481,339 - DDA3937_RS02165 0.38 +1.3 481,339 - DDA3937_RS02165 0.38 +0.5 481,339 - DDA3937_RS02165 0.38 +0.0 481,339 - DDA3937_RS02165 0.38 -0.1 481,453 + DDA3937_RS02165 0.51 +0.8 481,453 + +2.4 481,454 - DDA3937_RS02165 0.51 +0.3 481,454 - DDA3937_RS02165 0.51 -0.2 481,454 - DDA3937_RS02165 0.51 -0.9 481,454 - DDA3937_RS02165 0.51 +1.3 481,454 - DDA3937_RS02165 0.51 +0.3 481,454 - DDA3937_RS02165 0.51 -0.2 481,454 - DDA3937_RS02165 0.51 -0.3 481,454 - DDA3937_RS02165 0.51 +0.7 481,456 - -1.0 481,682 - DDA3937_RS02165 0.76 +1.1 481,707 - DDA3937_RS02165 0.78 +0.2 481,707 - DDA3937_RS02165 0.78 -0.9 481,750 - DDA3937_RS02165 0.83 -1.3 481,804 - DDA3937_RS02165 0.89 -0.7 481,810 - DDA3937_RS02165 0.90 -0.4 481,869 - +0.0 481,937 + +0.8 481,938 - -1.2 481,938 - -0.7 482,178 + DDA3937_RS02170 0.32 -0.4 482,246 + DDA3937_RS02170 0.41 +0.1 482,246 + DDA3937_RS02170 0.41 -0.3 482,246 + DDA3937_RS02170 0.41 +0.3 482,353 + DDA3937_RS02170 0.54 +0.5 482,384 - DDA3937_RS02170 0.58 +0.0 482,435 + DDA3937_RS02170 0.64 -0.1 482,504 - DDA3937_RS02170 0.73 +0.0 482,504 - DDA3937_RS02170 0.73 -2.2 482,837 + -0.0 482,838 - +0.3 482,838 - -0.4 482,847 + -0.9
Or see this region's nucleotide sequence