Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_118

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_116 and Pf6N2E2_117 overlap by 8 nucleotidesPf6N2E2_117 and Pf6N2E2_118 overlap by 4 nucleotidesPf6N2E2_118 and Pf6N2E2_119 overlap by 4 nucleotides Pf6N2E2_116 - Glycosyltransferase, at 162,648 to 163,784 _116 Pf6N2E2_117 - Glycosyl transferase, group 2 family protein, at 163,777 to 164,736 _117 Pf6N2E2_118 - FIG00961753: hypothetical protein, at 164,733 to 166,103 _118 Pf6N2E2_119 - Glycosyltransferase, at 166,100 to 167,203 _119 Position (kb) 164 165 166 167Strain fitness (log2 ratio) -1 0 1 2at 163.735 kb on + strandat 163.741 kb on + strandat 163.742 kb on - strandat 163.768 kb on + strandat 163.769 kb on - strandat 164.705 kb on + strandat 164.705 kb on + strandat 164.947 kb on + strand, within Pf6N2E2_118at 164.947 kb on + strand, within Pf6N2E2_118at 164.948 kb on - strand, within Pf6N2E2_118at 165.019 kb on + strand, within Pf6N2E2_118at 165.019 kb on + strand, within Pf6N2E2_118at 165.019 kb on + strand, within Pf6N2E2_118at 165.020 kb on - strand, within Pf6N2E2_118at 165.097 kb on + strand, within Pf6N2E2_118at 165.172 kb on + strand, within Pf6N2E2_118at 165.172 kb on + strand, within Pf6N2E2_118at 165.172 kb on + strand, within Pf6N2E2_118at 165.172 kb on + strand, within Pf6N2E2_118at 165.173 kb on - strand, within Pf6N2E2_118at 165.364 kb on + strand, within Pf6N2E2_118at 165.384 kb on - strand, within Pf6N2E2_118at 165.474 kb on + strand, within Pf6N2E2_118at 165.475 kb on - strand, within Pf6N2E2_118at 165.589 kb on + strand, within Pf6N2E2_118at 165.778 kb on + strand, within Pf6N2E2_118at 165.812 kb on + strand, within Pf6N2E2_118at 165.813 kb on - strand, within Pf6N2E2_118at 165.982 kb on + strandat 166.131 kb on + strandat 166.131 kb on + strandat 166.132 kb on - strandat 166.294 kb on + strand, within Pf6N2E2_119at 166.310 kb on + strand, within Pf6N2E2_119at 166.310 kb on + strand, within Pf6N2E2_119at 166.311 kb on - strand, within Pf6N2E2_119at 166.311 kb on - strand, within Pf6N2E2_119at 166.311 kb on - strand, within Pf6N2E2_119at 166.455 kb on + strand, within Pf6N2E2_119at 166.822 kb on + strand, within Pf6N2E2_119at 166.823 kb on - strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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163,735 + +1.1
163,741 + -0.1
163,742 - +0.8
163,768 + +0.8
163,769 - -0.5
164,705 + -0.9
164,705 + +0.6
164,947 + Pf6N2E2_118 0.16 +1.8
164,947 + Pf6N2E2_118 0.16 +0.2
164,948 - Pf6N2E2_118 0.16 +1.4
165,019 + Pf6N2E2_118 0.21 +0.7
165,019 + Pf6N2E2_118 0.21 +1.2
165,019 + Pf6N2E2_118 0.21 +0.1
165,020 - Pf6N2E2_118 0.21 +1.0
165,097 + Pf6N2E2_118 0.27 +0.8
165,172 + Pf6N2E2_118 0.32 +0.1
165,172 + Pf6N2E2_118 0.32 +1.0
165,172 + Pf6N2E2_118 0.32 +0.0
165,172 + Pf6N2E2_118 0.32 -0.6
165,173 - Pf6N2E2_118 0.32 -0.2
165,364 + Pf6N2E2_118 0.46 +1.2
165,384 - Pf6N2E2_118 0.47 -0.2
165,474 + Pf6N2E2_118 0.54 +1.2
165,475 - Pf6N2E2_118 0.54 +1.3
165,589 + Pf6N2E2_118 0.62 +0.7
165,778 + Pf6N2E2_118 0.76 +0.7
165,812 + Pf6N2E2_118 0.79 +0.4
165,813 - Pf6N2E2_118 0.79 +0.8
165,982 + +0.8
166,131 + -0.2
166,131 + -0.1
166,132 - +0.3
166,294 + Pf6N2E2_119 0.18 +0.8
166,310 + Pf6N2E2_119 0.19 +1.1
166,310 + Pf6N2E2_119 0.19 +0.4
166,311 - Pf6N2E2_119 0.19 +0.1
166,311 - Pf6N2E2_119 0.19 -0.8
166,311 - Pf6N2E2_119 0.19 +0.4
166,455 + Pf6N2E2_119 0.32 +0.7
166,822 + Pf6N2E2_119 0.65 +0.4
166,823 - Pf6N2E2_119 0.65 +2.0
166,824 + Pf6N2E2_119 0.66 +0.1
166,824 + Pf6N2E2_119 0.66 +0.1
166,824 + Pf6N2E2_119 0.66 +0.9
166,824 + Pf6N2E2_119 0.66 +1.0
166,825 - Pf6N2E2_119 0.66 +0.2
166,825 - Pf6N2E2_119 0.66 -0.5
166,825 - Pf6N2E2_119 0.66 -0.0
166,825 - Pf6N2E2_119 0.66 -0.1
166,825 - Pf6N2E2_119 0.66 +1.2
166,825 - Pf6N2E2_119 0.66 -0.1

Or see this region's nucleotide sequence