Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5138 and Pf6N2E2_5139 overlap by 4 nucleotides Pf6N2E2_5139 and Pf6N2E2_5140 are separated by 11 nucleotides Pf6N2E2_5140 and Pf6N2E2_5141 are separated by 1 nucleotides
Pf6N2E2_5138 - FIG003276: zinc-binding protein, at 5,922,581 to 5,922,781
_5138
Pf6N2E2_5139 - Dephospho-CoA kinase (EC 2.7.1.24), at 5,922,778 to 5,923,389
_5139
Pf6N2E2_5140 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 5,923,401 to 5,924,270
_5140
Pf6N2E2_5141 - Type IV fimbrial assembly protein PilC, at 5,924,272 to 5,925,489
_5141
Position (kb) 5923
5924
5925 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5922.429 kb on + strand at 5922.429 kb on + strand at 5922.801 kb on + strand at 5922.801 kb on + strand at 5922.802 kb on - strand at 5922.802 kb on - strand at 5922.802 kb on - strand at 5923.396 kb on - strand at 5923.403 kb on - strand at 5923.403 kb on - strand at 5923.403 kb on - strand at 5923.424 kb on - strand at 5923.424 kb on - strand at 5923.424 kb on - strand at 5923.480 kb on + strand at 5923.532 kb on + strand, within Pf6N2E2_5140 at 5923.532 kb on + strand at 5923.533 kb on - strand, within Pf6N2E2_5140 at 5923.533 kb on - strand, within Pf6N2E2_5140 at 5924.002 kb on + strand, within Pf6N2E2_5140 at 5924.002 kb on + strand, within Pf6N2E2_5140 at 5924.003 kb on - strand, within Pf6N2E2_5140 at 5924.003 kb on - strand, within Pf6N2E2_5140 at 5924.243 kb on - strand at 5924.243 kb on - strand at 5924.306 kb on + strand at 5924.306 kb on + strand at 5924.306 kb on + strand at 5924.306 kb on + strand at 5924.307 kb on - strand at 5924.307 kb on - strand at 5924.307 kb on - strand at 5924.307 kb on - strand at 5924.307 kb on - strand at 5924.411 kb on + strand, within Pf6N2E2_5141 at 5924.412 kb on - strand, within Pf6N2E2_5141 at 5924.412 kb on - strand, within Pf6N2E2_5141 at 5924.412 kb on - strand, within Pf6N2E2_5141 at 5924.688 kb on - strand, within Pf6N2E2_5141 at 5924.688 kb on - strand, within Pf6N2E2_5141 at 5924.688 kb on - strand, within Pf6N2E2_5141 at 5924.688 kb on - strand, within Pf6N2E2_5141 at 5924.768 kb on + strand, within Pf6N2E2_5141 at 5924.972 kb on + strand, within Pf6N2E2_5141 at 5924.973 kb on - strand, within Pf6N2E2_5141 at 5925.023 kb on + strand, within Pf6N2E2_5141 at 5925.023 kb on + strand, within Pf6N2E2_5141 at 5925.023 kb on + strand, within Pf6N2E2_5141 at 5925.024 kb on - strand, within Pf6N2E2_5141 at 5925.092 kb on + strand, within Pf6N2E2_5141 at 5925.092 kb on + strand, within Pf6N2E2_5141 at 5925.092 kb on + strand, within Pf6N2E2_5141 at 5925.093 kb on - strand, within Pf6N2E2_5141 at 5925.107 kb on + strand, within Pf6N2E2_5141 at 5925.107 kb on + strand, within Pf6N2E2_5141 at 5925.107 kb on + strand, within Pf6N2E2_5141 at 5925.107 kb on + strand, within Pf6N2E2_5141
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 5,922,429 + +0.0 5,922,429 + +2.0 5,922,801 + +0.3 5,922,801 + -0.8 5,922,802 - -0.2 5,922,802 - +1.5 5,922,802 - +0.6 5,923,396 - +1.1 5,923,403 - +0.8 5,923,403 - +0.1 5,923,403 - -0.8 5,923,424 - +1.1 5,923,424 - -0.3 5,923,424 - +0.8 5,923,480 + +0.4 5,923,532 + Pf6N2E2_5140 0.15 +0.3 5,923,532 + +1.1 5,923,533 - Pf6N2E2_5140 0.15 -1.1 5,923,533 - Pf6N2E2_5140 0.15 -0.8 5,924,002 + Pf6N2E2_5140 0.69 +0.1 5,924,002 + Pf6N2E2_5140 0.69 -0.4 5,924,003 - Pf6N2E2_5140 0.69 -1.8 5,924,003 - Pf6N2E2_5140 0.69 -1.2 5,924,243 - +0.7 5,924,243 - -1.2 5,924,306 + +2.0 5,924,306 + +0.2 5,924,306 + +1.1 5,924,306 + +0.1 5,924,307 - -1.1 5,924,307 - +0.7 5,924,307 - +0.0 5,924,307 - -0.0 5,924,307 - +1.7 5,924,411 + Pf6N2E2_5141 0.11 +0.2 5,924,412 - Pf6N2E2_5141 0.11 -1.1 5,924,412 - Pf6N2E2_5141 0.11 +0.6 5,924,412 - Pf6N2E2_5141 0.11 +1.1 5,924,688 - Pf6N2E2_5141 0.34 -0.0 5,924,688 - Pf6N2E2_5141 0.34 -0.1 5,924,688 - Pf6N2E2_5141 0.34 +1.0 5,924,688 - Pf6N2E2_5141 0.34 +0.8 5,924,768 + Pf6N2E2_5141 0.41 +0.6 5,924,972 + Pf6N2E2_5141 0.57 +0.6 5,924,973 - Pf6N2E2_5141 0.58 -1.4 5,925,023 + Pf6N2E2_5141 0.62 -0.8 5,925,023 + Pf6N2E2_5141 0.62 -1.2 5,925,023 + Pf6N2E2_5141 0.62 +0.4 5,925,024 - Pf6N2E2_5141 0.62 +0.1 5,925,092 + Pf6N2E2_5141 0.67 +0.3 5,925,092 + Pf6N2E2_5141 0.67 +1.1 5,925,092 + Pf6N2E2_5141 0.67 -0.7 5,925,093 - Pf6N2E2_5141 0.67 -0.6 5,925,107 + Pf6N2E2_5141 0.69 +0.6 5,925,107 + Pf6N2E2_5141 0.69 -2.0 5,925,107 + Pf6N2E2_5141 0.69 +0.7 5,925,107 + Pf6N2E2_5141 0.69 -1.4
Or see this region's nucleotide sequence