Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_424 and Pf6N2E2_425 are separated by 217 nucleotides Pf6N2E2_425 and Pf6N2E2_426 are separated by 4 nucleotides Pf6N2E2_426 and Pf6N2E2_427 are separated by 161 nucleotides Pf6N2E2_427 and Pf6N2E2_428 are separated by 125 nucleotides
Pf6N2E2_424 - Decarboxylase family protein, at 492,718 to 494,091
_424
Pf6N2E2_425 - FIG00957304: hypothetical protein, at 494,309 to 494,842
_425
Pf6N2E2_426 - Arsenate reductase (EC 1.20.4.1), at 494,847 to 495,302
_426
Pf6N2E2_427 - Conidiation-specific protein 10, at 495,464 to 495,643
_427
Pf6N2E2_428 - Protease subunit of ATP-dependent Clp proteases, at 495,769 to 496,332
_428
Position (kb) 494
495
496 Strain fitness (log2 ratio) -2
-1
0
1
2 at 493.901 kb on + strand, within Pf6N2E2_424 at 493.902 kb on - strand, within Pf6N2E2_424 at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.983 kb on - strand at 493.983 kb on - strand at 493.986 kb on + strand at 494.074 kb on + strand at 494.074 kb on + strand at 494.074 kb on + strand at 494.074 kb on + strand at 494.074 kb on + strand at 494.074 kb on + strand at 494.075 kb on - strand at 494.075 kb on - strand at 494.075 kb on - strand at 494.241 kb on + strand at 494.241 kb on + strand at 494.241 kb on + strand at 494.242 kb on - strand at 494.245 kb on + strand at 494.245 kb on + strand at 494.245 kb on + strand at 494.245 kb on + strand at 494.245 kb on + strand at 494.245 kb on + strand at 494.246 kb on - strand at 494.246 kb on - strand at 494.246 kb on - strand at 494.246 kb on - strand at 494.246 kb on - strand at 494.289 kb on + strand at 494.289 kb on + strand at 494.290 kb on - strand at 494.290 kb on - strand at 494.290 kb on - strand at 494.342 kb on + strand at 494.343 kb on - strand at 494.343 kb on - strand at 494.343 kb on - strand at 494.519 kb on + strand, within Pf6N2E2_425 at 494.520 kb on - strand, within Pf6N2E2_425 at 494.555 kb on + strand, within Pf6N2E2_425 at 494.664 kb on - strand, within Pf6N2E2_425 at 494.664 kb on - strand, within Pf6N2E2_425 at 494.828 kb on + strand at 495.046 kb on + strand, within Pf6N2E2_426 at 495.047 kb on - strand, within Pf6N2E2_426 at 495.047 kb on - strand, within Pf6N2E2_426 at 495.047 kb on - strand, within Pf6N2E2_426 at 495.147 kb on + strand, within Pf6N2E2_426 at 495.147 kb on + strand, within Pf6N2E2_426 at 495.148 kb on - strand, within Pf6N2E2_426 at 495.148 kb on - strand, within Pf6N2E2_426 at 495.148 kb on - strand, within Pf6N2E2_426 at 495.148 kb on - strand, within Pf6N2E2_426 at 495.358 kb on + strand at 495.358 kb on + strand at 495.359 kb on - strand at 495.359 kb on - strand at 495.359 kb on - strand at 495.360 kb on + strand at 495.377 kb on - strand at 495.378 kb on + strand at 495.689 kb on - strand at 495.689 kb on - strand at 495.770 kb on + strand at 495.771 kb on - strand at 495.771 kb on - strand at 495.818 kb on - strand at 495.906 kb on + strand, within Pf6N2E2_428 at 495.944 kb on + strand, within Pf6N2E2_428 at 495.944 kb on + strand, within Pf6N2E2_428 at 495.944 kb on + strand, within Pf6N2E2_428 at 495.990 kb on - strand, within Pf6N2E2_428 at 495.990 kb on - strand, within Pf6N2E2_428 at 496.031 kb on + strand, within Pf6N2E2_428 at 496.032 kb on - strand, within Pf6N2E2_428 at 496.097 kb on + strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.144 kb on + strand, within Pf6N2E2_428 at 496.145 kb on - strand, within Pf6N2E2_428 at 496.145 kb on - strand, within Pf6N2E2_428 at 496.175 kb on + strand, within Pf6N2E2_428 at 496.175 kb on + strand, within Pf6N2E2_428 at 496.266 kb on + strand, within Pf6N2E2_428
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 493,901 + Pf6N2E2_424 0.86 -2.2 493,902 - Pf6N2E2_424 0.86 -2.0 493,982 + +0.6 493,982 + +0.6 493,982 + +0.3 493,982 + -1.7 493,982 + +0.8 493,982 + +1.5 493,982 + -0.4 493,982 + -0.3 493,982 + -0.9 493,983 - +2.7 493,983 - +0.5 493,986 + +1.5 494,074 + +0.1 494,074 + -0.2 494,074 + -0.2 494,074 + +0.8 494,074 + -0.2 494,074 + +1.7 494,075 - -1.5 494,075 - +0.5 494,075 - -0.0 494,241 + +1.0 494,241 + +0.8 494,241 + -0.1 494,242 - -0.4 494,245 + +0.7 494,245 + -0.1 494,245 + +0.1 494,245 + -1.1 494,245 + +0.1 494,245 + +0.7 494,246 - -0.4 494,246 - -1.2 494,246 - +0.6 494,246 - +0.7 494,246 - -0.6 494,289 + -0.1 494,289 + +0.4 494,290 - -1.2 494,290 - -0.8 494,290 - +0.4 494,342 + +0.1 494,343 - +1.6 494,343 - -0.7 494,343 - +0.8 494,519 + Pf6N2E2_425 0.39 +0.5 494,520 - Pf6N2E2_425 0.40 -1.2 494,555 + Pf6N2E2_425 0.46 +1.7 494,664 - Pf6N2E2_425 0.66 +1.4 494,664 - Pf6N2E2_425 0.66 -0.3 494,828 + -0.9 495,046 + Pf6N2E2_426 0.44 -1.1 495,047 - Pf6N2E2_426 0.44 -0.9 495,047 - Pf6N2E2_426 0.44 -0.8 495,047 - Pf6N2E2_426 0.44 -0.8 495,147 + Pf6N2E2_426 0.66 +2.7 495,147 + Pf6N2E2_426 0.66 -1.1 495,148 - Pf6N2E2_426 0.66 -1.7 495,148 - Pf6N2E2_426 0.66 -0.9 495,148 - Pf6N2E2_426 0.66 -1.4 495,148 - Pf6N2E2_426 0.66 +0.0 495,358 + -0.2 495,358 + -0.3 495,359 - +0.1 495,359 - -1.3 495,359 - +0.3 495,360 + -0.6 495,377 - -0.7 495,378 + -1.2 495,689 - -0.7 495,689 - +0.6 495,770 + +2.3 495,771 - +0.1 495,771 - +0.1 495,818 - -1.0 495,906 + Pf6N2E2_428 0.24 +0.6 495,944 + Pf6N2E2_428 0.31 -2.2 495,944 + Pf6N2E2_428 0.31 -0.4 495,944 + Pf6N2E2_428 0.31 +0.6 495,990 - Pf6N2E2_428 0.39 -0.2 495,990 - Pf6N2E2_428 0.39 +0.1 496,031 + Pf6N2E2_428 0.46 +0.5 496,032 - Pf6N2E2_428 0.47 +0.1 496,097 + Pf6N2E2_428 0.58 -0.4 496,098 - Pf6N2E2_428 0.58 -0.8 496,098 - Pf6N2E2_428 0.58 +1.1 496,098 - Pf6N2E2_428 0.58 +1.3 496,098 - Pf6N2E2_428 0.58 -0.4 496,098 - Pf6N2E2_428 0.58 -0.1 496,098 - Pf6N2E2_428 0.58 +0.0 496,144 + Pf6N2E2_428 0.66 -0.7 496,145 - Pf6N2E2_428 0.67 -0.6 496,145 - Pf6N2E2_428 0.67 +0.3 496,175 + Pf6N2E2_428 0.72 +2.0 496,175 + Pf6N2E2_428 0.72 +0.3 496,266 + Pf6N2E2_428 0.88 -0.3
Or see this region's nucleotide sequence