Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3756 and Pf6N2E2_3757 are separated by 13 nucleotides Pf6N2E2_3757 and Pf6N2E2_3758 overlap by 4 nucleotides Pf6N2E2_3758 and Pf6N2E2_3759 overlap by 4 nucleotides
Pf6N2E2_3756 - Type IV pilus biogenesis protein PilQ, at 4,376,639 to 4,378,729
_3756
Pf6N2E2_3757 - Type IV pilus biogenesis protein PilP, at 4,378,743 to 4,379,270
_3757
Pf6N2E2_3758 - Type IV pilus biogenesis protein PilO, at 4,379,267 to 4,379,890
_3758
Pf6N2E2_3759 - Type IV pilus biogenesis protein PilN, at 4,379,887 to 4,380,453
_3759
Position (kb)
4378
4379
4380 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4377.824 kb on - strand, within Pf6N2E2_3756 at 4377.897 kb on + strand, within Pf6N2E2_3756 at 4377.897 kb on + strand, within Pf6N2E2_3756 at 4377.897 kb on + strand, within Pf6N2E2_3756 at 4377.981 kb on + strand, within Pf6N2E2_3756 at 4377.981 kb on + strand, within Pf6N2E2_3756 at 4377.981 kb on + strand, within Pf6N2E2_3756 at 4377.982 kb on - strand, within Pf6N2E2_3756 at 4378.381 kb on + strand, within Pf6N2E2_3756 at 4378.382 kb on - strand, within Pf6N2E2_3756 at 4378.382 kb on - strand, within Pf6N2E2_3756 at 4378.382 kb on - strand, within Pf6N2E2_3756 at 4378.382 kb on - strand, within Pf6N2E2_3756 at 4378.401 kb on + strand, within Pf6N2E2_3756 at 4378.402 kb on - strand, within Pf6N2E2_3756 at 4378.418 kb on - strand, within Pf6N2E2_3756 at 4378.567 kb on - strand at 4378.744 kb on + strand at 4378.745 kb on - strand at 4378.873 kb on + strand, within Pf6N2E2_3757 at 4378.873 kb on + strand, within Pf6N2E2_3757 at 4378.873 kb on + strand, within Pf6N2E2_3757 at 4378.874 kb on - strand, within Pf6N2E2_3757 at 4378.990 kb on + strand, within Pf6N2E2_3757 at 4378.990 kb on + strand, within Pf6N2E2_3757 at 4378.990 kb on + strand, within Pf6N2E2_3757 at 4378.991 kb on - strand, within Pf6N2E2_3757 at 4378.991 kb on - strand, within Pf6N2E2_3757 at 4379.101 kb on + strand, within Pf6N2E2_3757 at 4379.101 kb on + strand, within Pf6N2E2_3757 at 4379.101 kb on + strand, within Pf6N2E2_3757 at 4379.101 kb on + strand, within Pf6N2E2_3757 at 4379.102 kb on - strand, within Pf6N2E2_3757 at 4379.102 kb on - strand, within Pf6N2E2_3757 at 4379.102 kb on - strand, within Pf6N2E2_3757 at 4379.102 kb on - strand, within Pf6N2E2_3757 at 4379.102 kb on - strand, within Pf6N2E2_3757 at 4379.102 kb on - strand, within Pf6N2E2_3757 at 4379.102 kb on - strand, within Pf6N2E2_3757 at 4379.105 kb on + strand, within Pf6N2E2_3757 at 4379.106 kb on - strand, within Pf6N2E2_3757 at 4379.116 kb on + strand, within Pf6N2E2_3757 at 4379.179 kb on + strand, within Pf6N2E2_3757 at 4379.179 kb on + strand, within Pf6N2E2_3757 at 4379.180 kb on - strand, within Pf6N2E2_3757 at 4379.180 kb on - strand, within Pf6N2E2_3757 at 4379.180 kb on - strand, within Pf6N2E2_3757 at 4379.180 kb on - strand, within Pf6N2E2_3757 at 4379.180 kb on - strand, within Pf6N2E2_3757 at 4379.253 kb on - strand at 4379.253 kb on - strand at 4379.299 kb on - strand at 4379.469 kb on + strand, within Pf6N2E2_3758 at 4379.469 kb on + strand, within Pf6N2E2_3758 at 4379.470 kb on - strand, within Pf6N2E2_3758 at 4379.542 kb on + strand, within Pf6N2E2_3758 at 4379.637 kb on + strand, within Pf6N2E2_3758 at 4379.637 kb on + strand, within Pf6N2E2_3758 at 4379.749 kb on + strand, within Pf6N2E2_3758 at 4379.749 kb on + strand, within Pf6N2E2_3758 at 4379.750 kb on - strand, within Pf6N2E2_3758 at 4379.750 kb on - strand, within Pf6N2E2_3758 at 4379.750 kb on - strand, within Pf6N2E2_3758 at 4379.752 kb on - strand, within Pf6N2E2_3758 at 4380.113 kb on + strand, within Pf6N2E2_3759 at 4380.113 kb on + strand, within Pf6N2E2_3759 at 4380.113 kb on + strand, within Pf6N2E2_3759 at 4380.113 kb on + strand, within Pf6N2E2_3759 at 4380.113 kb on + strand, within Pf6N2E2_3759 at 4380.113 kb on + strand, within Pf6N2E2_3759 at 4380.113 kb on + strand, within Pf6N2E2_3759 at 4380.113 kb on + strand, within Pf6N2E2_3759 at 4380.114 kb on - strand, within Pf6N2E2_3759 at 4380.114 kb on - strand, within Pf6N2E2_3759 at 4380.114 kb on - strand, within Pf6N2E2_3759 at 4380.114 kb on - strand, within Pf6N2E2_3759 at 4380.175 kb on - strand, within Pf6N2E2_3759
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 4,377,824 - Pf6N2E2_3756 0.57 +0.8 4,377,897 + Pf6N2E2_3756 0.60 -1.9 4,377,897 + Pf6N2E2_3756 0.60 +0.3 4,377,897 + Pf6N2E2_3756 0.60 -1.3 4,377,981 + Pf6N2E2_3756 0.64 -0.6 4,377,981 + Pf6N2E2_3756 0.64 +1.1 4,377,981 + Pf6N2E2_3756 0.64 -0.6 4,377,982 - Pf6N2E2_3756 0.64 +0.8 4,378,381 + Pf6N2E2_3756 0.83 -2.6 4,378,382 - Pf6N2E2_3756 0.83 +0.9 4,378,382 - Pf6N2E2_3756 0.83 -1.2 4,378,382 - Pf6N2E2_3756 0.83 -3.2 4,378,382 - Pf6N2E2_3756 0.83 +0.2 4,378,401 + Pf6N2E2_3756 0.84 -0.6 4,378,402 - Pf6N2E2_3756 0.84 +0.6 4,378,418 - Pf6N2E2_3756 0.85 -2.9 4,378,567 - -0.0 4,378,744 + -0.4 4,378,745 - -1.4 4,378,873 + Pf6N2E2_3757 0.25 +0.8 4,378,873 + Pf6N2E2_3757 0.25 +0.6 4,378,873 + Pf6N2E2_3757 0.25 -0.3 4,378,874 - Pf6N2E2_3757 0.25 -1.0 4,378,990 + Pf6N2E2_3757 0.47 -1.4 4,378,990 + Pf6N2E2_3757 0.47 -0.8 4,378,990 + Pf6N2E2_3757 0.47 +0.3 4,378,991 - Pf6N2E2_3757 0.47 -1.3 4,378,991 - Pf6N2E2_3757 0.47 -2.3 4,379,101 + Pf6N2E2_3757 0.68 +0.5 4,379,101 + Pf6N2E2_3757 0.68 -0.4 4,379,101 + Pf6N2E2_3757 0.68 -0.5 4,379,101 + Pf6N2E2_3757 0.68 -1.4 4,379,102 - Pf6N2E2_3757 0.68 -0.5 4,379,102 - Pf6N2E2_3757 0.68 +1.0 4,379,102 - Pf6N2E2_3757 0.68 +1.1 4,379,102 - Pf6N2E2_3757 0.68 -1.8 4,379,102 - Pf6N2E2_3757 0.68 -0.1 4,379,102 - Pf6N2E2_3757 0.68 -1.6 4,379,102 - Pf6N2E2_3757 0.68 +1.0 4,379,105 + Pf6N2E2_3757 0.69 +0.2 4,379,106 - Pf6N2E2_3757 0.69 -1.9 4,379,116 + Pf6N2E2_3757 0.71 -1.4 4,379,179 + Pf6N2E2_3757 0.83 -0.5 4,379,179 + Pf6N2E2_3757 0.83 -1.2 4,379,180 - Pf6N2E2_3757 0.83 -1.6 4,379,180 - Pf6N2E2_3757 0.83 -3.4 4,379,180 - Pf6N2E2_3757 0.83 -0.6 4,379,180 - Pf6N2E2_3757 0.83 -0.7 4,379,180 - Pf6N2E2_3757 0.83 +0.3 4,379,253 - -2.5 4,379,253 - -3.8 4,379,299 - -3.0 4,379,469 + Pf6N2E2_3758 0.32 -0.3 4,379,469 + Pf6N2E2_3758 0.32 +2.8 4,379,470 - Pf6N2E2_3758 0.33 -1.2 4,379,542 + Pf6N2E2_3758 0.44 -0.3 4,379,637 + Pf6N2E2_3758 0.59 +1.5 4,379,637 + Pf6N2E2_3758 0.59 +1.5 4,379,749 + Pf6N2E2_3758 0.77 -1.8 4,379,749 + Pf6N2E2_3758 0.77 -0.6 4,379,750 - Pf6N2E2_3758 0.77 -0.7 4,379,750 - Pf6N2E2_3758 0.77 +1.0 4,379,750 - Pf6N2E2_3758 0.77 +1.7 4,379,752 - Pf6N2E2_3758 0.78 +1.7 4,380,113 + Pf6N2E2_3759 0.40 -1.7 4,380,113 + Pf6N2E2_3759 0.40 -2.0 4,380,113 + Pf6N2E2_3759 0.40 +0.3 4,380,113 + Pf6N2E2_3759 0.40 +0.3 4,380,113 + Pf6N2E2_3759 0.40 +0.8 4,380,113 + Pf6N2E2_3759 0.40 -0.0 4,380,113 + Pf6N2E2_3759 0.40 +1.3 4,380,113 + Pf6N2E2_3759 0.40 +0.1 4,380,114 - Pf6N2E2_3759 0.40 +1.6 4,380,114 - Pf6N2E2_3759 0.40 +0.5 4,380,114 - Pf6N2E2_3759 0.40 -2.4 4,380,114 - Pf6N2E2_3759 0.40 -0.1 4,380,175 - Pf6N2E2_3759 0.51 -0.4
Or see this region's nucleotide sequence