Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_402

Experiment: Cadmium chloride hemipentahydrate 0.000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_401 and Pf6N2E2_402 are separated by 97 nucleotidesPf6N2E2_402 and Pf6N2E2_403 are separated by 39 nucleotidesPf6N2E2_403 and Pf6N2E2_404 are separated by 244 nucleotides Pf6N2E2_401 - Cyn operon transcriptional activator, at 471,321 to 472,220 _401 Pf6N2E2_402 - Carbonic anhydrase (EC 4.2.1.1), at 472,318 to 472,977 _402 Pf6N2E2_403 - Cyanate hydratase (EC 4.2.1.104), at 473,017 to 473,487 _403 Pf6N2E2_404 - Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit, at 473,732 to 473,854 _404 Position (kb) 472 473Strain fitness (log2 ratio) -2 -1 0 1at 471.322 kb on + strandat 471.322 kb on + strandat 471.322 kb on + strandat 471.323 kb on - strandat 471.323 kb on - strandat 471.323 kb on - strandat 471.492 kb on + strand, within Pf6N2E2_401at 471.493 kb on - strand, within Pf6N2E2_401at 471.493 kb on - strand, within Pf6N2E2_401at 471.501 kb on + strand, within Pf6N2E2_401at 471.502 kb on - strand, within Pf6N2E2_401at 471.590 kb on - strand, within Pf6N2E2_401at 471.590 kb on - strand, within Pf6N2E2_401at 471.755 kb on + strand, within Pf6N2E2_401at 471.756 kb on - strand, within Pf6N2E2_401at 471.759 kb on + strand, within Pf6N2E2_401at 471.854 kb on + strand, within Pf6N2E2_401at 471.855 kb on - strand, within Pf6N2E2_401at 471.898 kb on + strand, within Pf6N2E2_401at 471.898 kb on + strand, within Pf6N2E2_401at 471.898 kb on + strand, within Pf6N2E2_401at 471.899 kb on - strand, within Pf6N2E2_401at 471.899 kb on - strand, within Pf6N2E2_401at 471.994 kb on + strand, within Pf6N2E2_401at 472.009 kb on + strand, within Pf6N2E2_401at 472.018 kb on + strand, within Pf6N2E2_401at 472.018 kb on + strand, within Pf6N2E2_401at 472.018 kb on + strand, within Pf6N2E2_401at 472.019 kb on - strand, within Pf6N2E2_401at 472.019 kb on - strand, within Pf6N2E2_401at 472.019 kb on - strand, within Pf6N2E2_401at 472.186 kb on + strandat 472.187 kb on - strandat 472.187 kb on - strandat 472.279 kb on + strandat 472.279 kb on + strandat 472.279 kb on + strandat 472.279 kb on + strandat 472.280 kb on - strandat 472.280 kb on - strandat 472.280 kb on - strandat 472.601 kb on + strand, within Pf6N2E2_402at 472.602 kb on - strand, within Pf6N2E2_402at 472.751 kb on + strand, within Pf6N2E2_402at 472.861 kb on + strand, within Pf6N2E2_402at 472.861 kb on + strand, within Pf6N2E2_402at 472.862 kb on - strand, within Pf6N2E2_402at 472.862 kb on - strand, within Pf6N2E2_402at 472.862 kb on - strand, within Pf6N2E2_402at 472.862 kb on - strand, within Pf6N2E2_402at 472.862 kb on - strand, within Pf6N2E2_402at 472.985 kb on - strandat 473.012 kb on - strandat 473.299 kb on + strand, within Pf6N2E2_403at 473.299 kb on + strand, within Pf6N2E2_403at 473.299 kb on + strand, within Pf6N2E2_403at 473.300 kb on - strand, within Pf6N2E2_403at 473.300 kb on - strand, within Pf6N2E2_403at 473.309 kb on - strand, within Pf6N2E2_403at 473.309 kb on - strand, within Pf6N2E2_403at 473.327 kb on - strand, within Pf6N2E2_403at 473.327 kb on - strand, within Pf6N2E2_403at 473.464 kb on + strandat 473.464 kb on + strandat 473.464 kb on + strandat 473.464 kb on + strandat 473.464 kb on + strandat 473.464 kb on + strandat 473.464 kb on + strandat 473.465 kb on - strandat 473.465 kb on - strandat 473.465 kb on - strandat 473.472 kb on + strandat 473.473 kb on - strandat 473.490 kb on + strandat 473.491 kb on - strandat 473.491 kb on - strandat 473.491 kb on - strandat 473.491 kb on - strandat 473.523 kb on - strandat 473.523 kb on - strandat 473.540 kb on + strandat 473.540 kb on + strandat 473.586 kb on + strandat 473.586 kb on + strandat 473.587 kb on - strandat 473.587 kb on - strandat 473.587 kb on - strandat 473.587 kb on - strandat 473.620 kb on - strandat 473.620 kb on - strandat 473.620 kb on - strandat 473.665 kb on + strandat 473.665 kb on + strandat 473.666 kb on - strandat 473.684 kb on - strandat 473.755 kb on + strand, within Pf6N2E2_404at 473.756 kb on - strand, within Pf6N2E2_404at 473.756 kb on - strand, within Pf6N2E2_404at 473.756 kb on - strand, within Pf6N2E2_404at 473.766 kb on + strand, within Pf6N2E2_404at 473.766 kb on + strand, within Pf6N2E2_404at 473.766 kb on + strand, within Pf6N2E2_404at 473.767 kb on - strand, within Pf6N2E2_404at 473.787 kb on - strand, within Pf6N2E2_404at 473.787 kb on - strand, within Pf6N2E2_404at 473.823 kb on - strand, within Pf6N2E2_404at 473.830 kb on + strand, within Pf6N2E2_404at 473.832 kb on + strand, within Pf6N2E2_404at 473.832 kb on + strand, within Pf6N2E2_404at 473.832 kb on + strand, within Pf6N2E2_404at 473.832 kb on + strand, within Pf6N2E2_404at 473.832 kb on + strand, within Pf6N2E2_404at 473.832 kb on + strand, within Pf6N2E2_404at 473.832 kb on + strand, within Pf6N2E2_404at 473.832 kb on + strand, within Pf6N2E2_404at 473.832 kb on + strand, within Pf6N2E2_404at 473.832 kb on + strand, within Pf6N2E2_404at 473.832 kb on - strand, within Pf6N2E2_404at 473.833 kb on - strand, within Pf6N2E2_404at 473.833 kb on - strand, within Pf6N2E2_404at 473.833 kb on - strand, within Pf6N2E2_404at 473.833 kb on - strand, within Pf6N2E2_404at 473.833 kb on - strand, within Pf6N2E2_404at 473.836 kb on + strand, within Pf6N2E2_404at 473.944 kb on + strandat 473.944 kb on + strandat 473.945 kb on - strandat 473.947 kb on + strandat 473.947 kb on + strandat 473.948 kb on - strandat 473.948 kb on - strandat 473.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M
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471,322 + -1.5
471,322 + -1.4
471,322 + +0.1
471,323 - +0.4
471,323 - +0.7
471,323 - -0.1
471,492 + Pf6N2E2_401 0.19 -0.1
471,493 - Pf6N2E2_401 0.19 -1.1
471,493 - Pf6N2E2_401 0.19 +0.4
471,501 + Pf6N2E2_401 0.20 -0.6
471,502 - Pf6N2E2_401 0.20 -0.7
471,590 - Pf6N2E2_401 0.30 +0.9
471,590 - Pf6N2E2_401 0.30 +0.8
471,755 + Pf6N2E2_401 0.48 +0.3
471,756 - Pf6N2E2_401 0.48 +0.2
471,759 + Pf6N2E2_401 0.49 -0.2
471,854 + Pf6N2E2_401 0.59 -0.0
471,855 - Pf6N2E2_401 0.59 -0.2
471,898 + Pf6N2E2_401 0.64 +0.2
471,898 + Pf6N2E2_401 0.64 -0.1
471,898 + Pf6N2E2_401 0.64 -0.6
471,899 - Pf6N2E2_401 0.64 +0.1
471,899 - Pf6N2E2_401 0.64 +0.5
471,994 + Pf6N2E2_401 0.75 +1.3
472,009 + Pf6N2E2_401 0.76 -0.1
472,018 + Pf6N2E2_401 0.77 +0.1
472,018 + Pf6N2E2_401 0.77 -0.3
472,018 + Pf6N2E2_401 0.77 +0.1
472,019 - Pf6N2E2_401 0.78 +0.4
472,019 - Pf6N2E2_401 0.78 +1.5
472,019 - Pf6N2E2_401 0.78 -0.4
472,186 + -0.3
472,187 - -0.3
472,187 - -0.2
472,279 + +0.9
472,279 + -0.0
472,279 + +0.5
472,279 + -0.4
472,280 - -0.1
472,280 - -0.4
472,280 - -0.8
472,601 + Pf6N2E2_402 0.43 +0.2
472,602 - Pf6N2E2_402 0.43 +0.1
472,751 + Pf6N2E2_402 0.66 +0.3
472,861 + Pf6N2E2_402 0.82 +0.5
472,861 + Pf6N2E2_402 0.82 +0.1
472,862 - Pf6N2E2_402 0.82 +0.3
472,862 - Pf6N2E2_402 0.82 +0.2
472,862 - Pf6N2E2_402 0.82 +0.1
472,862 - Pf6N2E2_402 0.82 +0.9
472,862 - Pf6N2E2_402 0.82 +1.3
472,985 - -0.1
473,012 - -0.4
473,299 + Pf6N2E2_403 0.60 -0.7
473,299 + Pf6N2E2_403 0.60 -0.2
473,299 + Pf6N2E2_403 0.60 +0.8
473,300 - Pf6N2E2_403 0.60 +1.5
473,300 - Pf6N2E2_403 0.60 +0.5
473,309 - Pf6N2E2_403 0.62 +0.1
473,309 - Pf6N2E2_403 0.62 +0.3
473,327 - Pf6N2E2_403 0.66 -0.1
473,327 - Pf6N2E2_403 0.66 +0.2
473,464 + +0.2
473,464 + +0.2
473,464 + +0.1
473,464 + +0.5
473,464 + +0.9
473,464 + +0.3
473,464 + +1.0
473,465 - -2.2
473,465 - +1.3
473,465 - +0.2
473,472 + +0.3
473,473 - -0.8
473,490 + -0.3
473,491 - +0.3
473,491 - +0.6
473,491 - -0.4
473,491 - +0.5
473,523 - +0.6
473,523 - +0.8
473,540 + +0.6
473,540 + +0.4
473,586 + +1.0
473,586 + -0.3
473,587 - -1.8
473,587 - +0.2
473,587 - +0.6
473,587 - +1.1
473,620 - +1.0
473,620 - +0.6
473,620 - +0.5
473,665 + -0.3
473,665 + +1.6
473,666 - -0.6
473,684 - -0.1
473,755 + Pf6N2E2_404 0.19 -1.0
473,756 - Pf6N2E2_404 0.20 -0.2
473,756 - Pf6N2E2_404 0.20 +0.3
473,756 - Pf6N2E2_404 0.20 +0.3
473,766 + Pf6N2E2_404 0.28 +0.2
473,766 + Pf6N2E2_404 0.28 +0.7
473,766 + Pf6N2E2_404 0.28 -1.5
473,767 - Pf6N2E2_404 0.28 +0.1
473,787 - Pf6N2E2_404 0.45 -0.1
473,787 - Pf6N2E2_404 0.45 +0.7
473,823 - Pf6N2E2_404 0.74 +0.5
473,830 + Pf6N2E2_404 0.80 +0.6
473,832 + Pf6N2E2_404 0.81 +0.0
473,832 + Pf6N2E2_404 0.81 +0.3
473,832 + Pf6N2E2_404 0.81 -1.4
473,832 + Pf6N2E2_404 0.81 -1.0
473,832 + Pf6N2E2_404 0.81 -1.0
473,832 + Pf6N2E2_404 0.81 -0.1
473,832 + Pf6N2E2_404 0.81 -0.1
473,832 + Pf6N2E2_404 0.81 -1.3
473,832 + Pf6N2E2_404 0.81 -0.8
473,832 + Pf6N2E2_404 0.81 -0.9
473,832 - Pf6N2E2_404 0.81 +0.5
473,833 - Pf6N2E2_404 0.82 -1.1
473,833 - Pf6N2E2_404 0.82 -0.0
473,833 - Pf6N2E2_404 0.82 -1.8
473,833 - Pf6N2E2_404 0.82 +1.1
473,833 - Pf6N2E2_404 0.82 -0.1
473,836 + Pf6N2E2_404 0.85 -0.2
473,944 + -0.4
473,944 + +0.1
473,945 - +0.1
473,947 + +0.6
473,947 + +1.3
473,948 - -0.7
473,948 - +1.3
473,948 - +1.0

Or see this region's nucleotide sequence