Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0434 and Sama_0435 are separated by 133 nucleotides Sama_0435 and Sama_0436 are separated by 227 nucleotides Sama_0436 and Sama_0437 are separated by 109 nucleotides Sama_0437 and Sama_0438 are separated by 1 nucleotides
Sama_0434: Sama_0434 - putative secreted hydrolase (RefSeq), at 533,075 to 534,367
_0434
Sama_0435: Sama_0435 - putative phosphoglycerate mutase family protein (RefSeq), at 534,501 to 535,082
_0435
Sama_0436: Sama_0436 - putative lipoprotein (RefSeq), at 535,310 to 535,879
_0436
Sama_0437: Sama_0437 - response regulator receiver protein (RefSeq), at 535,989 to 536,702
_0437
Sama_0438: Sama_0438 - signal transduction histidine kinase-like protein (RefSeq), at 536,704 to 538,971
_0438
Position (kb) 535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 534.333 kb on + strand at 534.333 kb on + strand at 534.333 kb on + strand at 534.333 kb on + strand at 534.333 kb on + strand at 534.334 kb on - strand at 534.334 kb on - strand at 534.358 kb on + strand at 534.425 kb on + strand at 534.425 kb on + strand at 534.425 kb on + strand at 534.425 kb on + strand at 534.425 kb on + strand at 534.426 kb on - strand at 534.426 kb on - strand at 534.426 kb on - strand at 534.468 kb on + strand at 534.538 kb on + strand at 534.541 kb on + strand at 534.542 kb on - strand at 534.560 kb on + strand, within Sama_0435 at 534.561 kb on - strand, within Sama_0435 at 534.613 kb on - strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.731 kb on + strand, within Sama_0435 at 534.731 kb on + strand, within Sama_0435 at 534.731 kb on + strand, within Sama_0435 at 534.731 kb on + strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.733 kb on + strand, within Sama_0435 at 534.733 kb on + strand, within Sama_0435 at 534.733 kb on + strand, within Sama_0435 at 534.733 kb on + strand, within Sama_0435 at 534.733 kb on + strand, within Sama_0435 at 534.734 kb on - strand, within Sama_0435 at 534.734 kb on - strand, within Sama_0435 at 534.734 kb on - strand, within Sama_0435 at 534.734 kb on - strand, within Sama_0435 at 534.785 kb on + strand, within Sama_0435 at 534.785 kb on + strand, within Sama_0435 at 534.785 kb on + strand, within Sama_0435 at 534.786 kb on - strand, within Sama_0435 at 534.786 kb on - strand, within Sama_0435 at 534.786 kb on - strand, within Sama_0435 at 534.823 kb on - strand, within Sama_0435 at 534.837 kb on + strand, within Sama_0435 at 534.925 kb on + strand, within Sama_0435 at 534.925 kb on + strand, within Sama_0435 at 534.925 kb on + strand, within Sama_0435 at 534.926 kb on - strand, within Sama_0435 at 534.926 kb on - strand, within Sama_0435 at 534.926 kb on - strand, within Sama_0435 at 534.964 kb on + strand, within Sama_0435 at 534.964 kb on + strand, within Sama_0435 at 535.092 kb on + strand at 535.109 kb on + strand at 535.122 kb on + strand at 535.122 kb on + strand at 535.122 kb on + strand at 535.183 kb on + strand at 535.183 kb on + strand at 535.183 kb on + strand at 535.285 kb on + strand at 535.286 kb on - strand at 535.323 kb on - strand at 535.323 kb on - strand at 535.326 kb on + strand at 535.326 kb on + strand at 535.326 kb on + strand at 535.326 kb on + strand at 535.326 kb on + strand at 535.326 kb on + strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.344 kb on + strand at 535.345 kb on - strand at 535.345 kb on - strand at 535.345 kb on - strand at 535.345 kb on - strand at 535.345 kb on - strand at 535.345 kb on - strand at 535.363 kb on + strand at 535.363 kb on + strand at 535.429 kb on + strand, within Sama_0436 at 535.430 kb on - strand, within Sama_0436 at 535.430 kb on - strand, within Sama_0436 at 535.433 kb on + strand, within Sama_0436 at 535.433 kb on + strand, within Sama_0436 at 535.433 kb on + strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.435 kb on + strand, within Sama_0436 at 535.435 kb on + strand, within Sama_0436 at 535.435 kb on + strand, within Sama_0436 at 535.488 kb on + strand, within Sama_0436 at 535.489 kb on - strand, within Sama_0436 at 535.489 kb on - strand, within Sama_0436 at 535.508 kb on + strand, within Sama_0436 at 535.508 kb on + strand, within Sama_0436 at 535.508 kb on + strand, within Sama_0436 at 535.509 kb on - strand, within Sama_0436 at 535.537 kb on + strand, within Sama_0436 at 535.537 kb on + strand, within Sama_0436 at 535.537 kb on + strand, within Sama_0436 at 535.538 kb on - strand, within Sama_0436 at 535.538 kb on - strand, within Sama_0436 at 535.538 kb on - strand, within Sama_0436 at 535.552 kb on + strand, within Sama_0436 at 535.553 kb on - strand, within Sama_0436 at 535.553 kb on - strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.572 kb on - strand, within Sama_0436 at 535.572 kb on - strand, within Sama_0436 at 535.572 kb on - strand, within Sama_0436 at 535.575 kb on - strand, within Sama_0436 at 535.608 kb on + strand, within Sama_0436 at 535.608 kb on + strand, within Sama_0436 at 535.608 kb on + strand, within Sama_0436 at 535.615 kb on + strand, within Sama_0436 at 535.616 kb on - strand, within Sama_0436 at 535.634 kb on + strand, within Sama_0436 at 535.634 kb on + strand, within Sama_0436 at 535.634 kb on + strand, within Sama_0436 at 535.636 kb on + strand, within Sama_0436 at 535.636 kb on + strand, within Sama_0436 at 535.637 kb on - strand, within Sama_0436 at 535.637 kb on - strand, within Sama_0436 at 535.637 kb on - strand, within Sama_0436 at 535.671 kb on + strand, within Sama_0436 at 535.750 kb on + strand, within Sama_0436 at 535.750 kb on + strand, within Sama_0436 at 535.751 kb on - strand, within Sama_0436 at 535.757 kb on + strand, within Sama_0436 at 535.758 kb on - strand, within Sama_0436 at 535.758 kb on - strand, within Sama_0436 at 535.758 kb on - strand, within Sama_0436 at 535.830 kb on - strand at 535.831 kb on + strand at 535.831 kb on + strand at 535.831 kb on + strand at 535.832 kb on - strand at 535.852 kb on + strand at 535.871 kb on + strand at 535.871 kb on + strand at 535.871 kb on + strand at 535.872 kb on - strand at 535.877 kb on + strand at 535.877 kb on + strand at 535.877 kb on + strand at 535.877 kb on + strand at 535.878 kb on - strand at 535.878 kb on - strand at 535.878 kb on - strand at 535.945 kb on + strand at 535.945 kb on + strand at 535.946 kb on - strand at 535.946 kb on - strand at 535.949 kb on + strand at 535.949 kb on + strand at 535.949 kb on + strand at 535.949 kb on + strand at 535.950 kb on - strand at 535.953 kb on + strand at 535.954 kb on - strand at 535.967 kb on + strand at 535.967 kb on + strand at 535.968 kb on - strand at 535.968 kb on - strand at 535.968 kb on - strand at 535.968 kb on - strand at 535.968 kb on - strand at 536.006 kb on + strand at 536.122 kb on + strand, within Sama_0437 at 536.123 kb on - strand, within Sama_0437 at 536.123 kb on - strand, within Sama_0437 at 536.123 kb on - strand, within Sama_0437 at 536.123 kb on - strand, within Sama_0437 at 536.208 kb on + strand, within Sama_0437 at 536.289 kb on + strand, within Sama_0437 at 536.289 kb on + strand, within Sama_0437 at 536.289 kb on + strand, within Sama_0437 at 536.289 kb on + strand, within Sama_0437 at 536.289 kb on + strand, within Sama_0437 at 536.289 kb on + strand, within Sama_0437 at 536.289 kb on + strand, within Sama_0437 at 536.289 kb on + strand, within Sama_0437 at 536.289 kb on + strand, within Sama_0437 at 536.289 kb on + strand, within Sama_0437 at 536.290 kb on - strand, within Sama_0437 at 536.290 kb on - strand, within Sama_0437 at 536.290 kb on - strand, within Sama_0437 at 536.290 kb on - strand, within Sama_0437 at 536.290 kb on - strand, within Sama_0437 at 536.423 kb on + strand, within Sama_0437 at 536.423 kb on + strand, within Sama_0437 at 536.423 kb on + strand, within Sama_0437 at 536.424 kb on - strand, within Sama_0437 at 536.424 kb on - strand, within Sama_0437 at 536.424 kb on - strand, within Sama_0437 at 536.432 kb on + strand, within Sama_0437 at 536.433 kb on - strand, within Sama_0437 at 536.465 kb on + strand, within Sama_0437 at 536.509 kb on + strand, within Sama_0437 at 536.509 kb on + strand, within Sama_0437 at 536.510 kb on - strand, within Sama_0437 at 536.582 kb on + strand, within Sama_0437 at 536.592 kb on - strand, within Sama_0437 at 536.592 kb on - strand, within Sama_0437 at 536.594 kb on + strand, within Sama_0437 at 536.594 kb on + strand, within Sama_0437 at 536.595 kb on - strand, within Sama_0437 at 536.595 kb on - strand, within Sama_0437 at 536.682 kb on + strand at 536.682 kb on + strand at 536.683 kb on - strand at 536.683 kb on - strand at 536.683 kb on - strand at 536.683 kb on - strand at 536.686 kb on + strand at 536.686 kb on + strand at 536.686 kb on + strand at 536.723 kb on + strand at 536.724 kb on - strand at 536.879 kb on + strand at 536.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 534,333 + +0.1 534,333 + -0.3 534,333 + -0.3 534,333 + +0.1 534,333 + -0.8 534,334 - -1.6 534,334 - +1.2 534,358 + +0.3 534,425 + -0.1 534,425 + +0.5 534,425 + +0.5 534,425 + -1.4 534,425 + +0.6 534,426 - -1.7 534,426 - +0.3 534,426 - +1.1 534,468 + +0.1 534,538 + -1.4 534,541 + -0.1 534,542 - -0.6 534,560 + Sama_0435 0.10 -0.4 534,561 - Sama_0435 0.10 -1.1 534,613 - Sama_0435 0.19 -1.4 534,729 + Sama_0435 0.39 +0.3 534,729 + Sama_0435 0.39 +0.9 534,729 + Sama_0435 0.39 +0.4 534,729 + Sama_0435 0.39 -0.2 534,729 + Sama_0435 0.39 +1.3 534,729 + Sama_0435 0.39 -0.1 534,729 + Sama_0435 0.39 +0.1 534,729 + Sama_0435 0.39 -0.1 534,729 + Sama_0435 0.39 -0.1 534,730 - Sama_0435 0.39 +0.1 534,730 - Sama_0435 0.39 +0.7 534,730 - Sama_0435 0.39 -1.1 534,730 - Sama_0435 0.39 +0.2 534,730 - Sama_0435 0.39 -1.1 534,730 - Sama_0435 0.39 +0.7 534,730 - Sama_0435 0.39 -0.9 534,730 - Sama_0435 0.39 -0.1 534,730 - Sama_0435 0.39 +1.3 534,730 - Sama_0435 0.39 -0.1 534,731 + Sama_0435 0.40 -0.1 534,731 + Sama_0435 0.40 -0.1 534,731 + Sama_0435 0.40 +0.3 534,731 + Sama_0435 0.40 -0.3 534,732 - Sama_0435 0.40 +0.3 534,732 - Sama_0435 0.40 +0.5 534,732 - Sama_0435 0.40 -0.0 534,732 - Sama_0435 0.40 -1.3 534,732 - Sama_0435 0.40 -0.5 534,732 - Sama_0435 0.40 -0.8 534,732 - Sama_0435 0.40 +0.9 534,733 + Sama_0435 0.40 +0.6 534,733 + Sama_0435 0.40 +1.0 534,733 + Sama_0435 0.40 +0.1 534,733 + Sama_0435 0.40 -0.1 534,733 + Sama_0435 0.40 -0.5 534,734 - Sama_0435 0.40 +1.4 534,734 - Sama_0435 0.40 +0.4 534,734 - Sama_0435 0.40 -1.7 534,734 - Sama_0435 0.40 -0.3 534,785 + Sama_0435 0.49 -0.2 534,785 + Sama_0435 0.49 -0.3 534,785 + Sama_0435 0.49 +1.1 534,786 - Sama_0435 0.49 -0.4 534,786 - Sama_0435 0.49 +0.9 534,786 - Sama_0435 0.49 -2.1 534,823 - Sama_0435 0.55 -1.3 534,837 + Sama_0435 0.58 +0.4 534,925 + Sama_0435 0.73 +0.9 534,925 + Sama_0435 0.73 +0.4 534,925 + Sama_0435 0.73 +0.2 534,926 - Sama_0435 0.73 +0.1 534,926 - Sama_0435 0.73 -0.0 534,926 - Sama_0435 0.73 -0.7 534,964 + Sama_0435 0.80 +0.6 534,964 + Sama_0435 0.80 -0.6 535,092 + +0.9 535,109 + -0.3 535,122 + -2.1 535,122 + -0.3 535,122 + -0.6 535,183 + -0.3 535,183 + -0.7 535,183 + -2.9 535,285 + -0.0 535,286 - -2.3 535,323 - -1.4 535,323 - +1.0 535,326 + +0.5 535,326 + -0.3 535,326 + +0.3 535,326 + -0.1 535,326 + +0.6 535,326 + +1.5 535,327 - +0.4 535,327 - -0.1 535,327 - -0.7 535,327 - -0.5 535,327 - -0.5 535,327 - +0.9 535,327 - -0.3 535,327 - +0.9 535,344 + -1.3 535,345 - -0.5 535,345 - +0.1 535,345 - +1.3 535,345 - -1.0 535,345 - +0.0 535,345 - -0.1 535,363 + +0.5 535,363 + +0.0 535,429 + Sama_0436 0.21 +1.6 535,430 - Sama_0436 0.21 +0.4 535,430 - Sama_0436 0.21 +0.6 535,433 + Sama_0436 0.22 -0.2 535,433 + Sama_0436 0.22 +0.5 535,433 + Sama_0436 0.22 -0.5 535,434 - Sama_0436 0.22 -0.0 535,434 - Sama_0436 0.22 -0.3 535,434 - Sama_0436 0.22 -2.1 535,434 - Sama_0436 0.22 -0.1 535,434 - Sama_0436 0.22 +2.5 535,434 - Sama_0436 0.22 -0.9 535,434 - Sama_0436 0.22 +0.9 535,434 - Sama_0436 0.22 +1.5 535,434 - Sama_0436 0.22 -0.1 535,434 - Sama_0436 0.22 -1.1 535,434 - Sama_0436 0.22 +0.4 535,434 - Sama_0436 0.22 -0.5 535,434 - Sama_0436 0.22 -0.2 535,435 + Sama_0436 0.22 -0.1 535,435 + Sama_0436 0.22 +0.5 535,435 + Sama_0436 0.22 +1.3 535,488 + Sama_0436 0.31 +1.9 535,489 - Sama_0436 0.31 +0.1 535,489 - Sama_0436 0.31 -0.2 535,508 + Sama_0436 0.35 -0.6 535,508 + Sama_0436 0.35 -0.8 535,508 + Sama_0436 0.35 -1.4 535,509 - Sama_0436 0.35 -0.5 535,537 + Sama_0436 0.40 +0.2 535,537 + Sama_0436 0.40 +0.5 535,537 + Sama_0436 0.40 +0.3 535,538 - Sama_0436 0.40 +0.3 535,538 - Sama_0436 0.40 +0.9 535,538 - Sama_0436 0.40 +0.3 535,552 + Sama_0436 0.42 +0.7 535,553 - Sama_0436 0.43 +0.2 535,553 - Sama_0436 0.43 +0.4 535,571 + Sama_0436 0.46 +1.3 535,571 + Sama_0436 0.46 +0.8 535,571 + Sama_0436 0.46 +0.2 535,571 + Sama_0436 0.46 +0.2 535,571 + Sama_0436 0.46 -1.4 535,571 + Sama_0436 0.46 +0.3 535,571 + Sama_0436 0.46 +0.6 535,572 - Sama_0436 0.46 +0.5 535,572 - Sama_0436 0.46 +0.3 535,572 - Sama_0436 0.46 -2.4 535,575 - Sama_0436 0.46 +1.5 535,608 + Sama_0436 0.52 +0.3 535,608 + Sama_0436 0.52 -0.1 535,608 + Sama_0436 0.52 -0.0 535,615 + Sama_0436 0.54 -0.3 535,616 - Sama_0436 0.54 +0.9 535,634 + Sama_0436 0.57 +0.6 535,634 + Sama_0436 0.57 -0.7 535,634 + Sama_0436 0.57 -0.2 535,636 + Sama_0436 0.57 +0.3 535,636 + Sama_0436 0.57 -0.4 535,637 - Sama_0436 0.57 +1.3 535,637 - Sama_0436 0.57 -0.4 535,637 - Sama_0436 0.57 -0.9 535,671 + Sama_0436 0.63 +0.1 535,750 + Sama_0436 0.77 -1.1 535,750 + Sama_0436 0.77 +0.4 535,751 - Sama_0436 0.77 -0.1 535,757 + Sama_0436 0.78 +0.2 535,758 - Sama_0436 0.79 +0.9 535,758 - Sama_0436 0.79 -1.4 535,758 - Sama_0436 0.79 -0.3 535,830 - -0.4 535,831 + +1.1 535,831 + +0.3 535,831 + -0.7 535,832 - -0.6 535,852 + -0.7 535,871 + +0.1 535,871 + +0.9 535,871 + +0.7 535,872 - -0.7 535,877 + -0.6 535,877 + +0.9 535,877 + -0.1 535,877 + +0.6 535,878 - +0.3 535,878 - -0.2 535,878 - -0.4 535,945 + -0.8 535,945 + +0.7 535,946 - +0.9 535,946 - +0.4 535,949 + +0.2 535,949 + +0.2 535,949 + -2.1 535,949 + +0.3 535,950 - -0.7 535,953 + -0.0 535,954 - +0.2 535,967 + +0.1 535,967 + +0.1 535,968 - +0.6 535,968 - +0.9 535,968 - +0.6 535,968 - +0.3 535,968 - +0.3 536,006 + +0.2 536,122 + Sama_0437 0.19 -0.4 536,123 - Sama_0437 0.19 +0.2 536,123 - Sama_0437 0.19 +0.9 536,123 - Sama_0437 0.19 +0.2 536,123 - Sama_0437 0.19 -0.5 536,208 + Sama_0437 0.31 +0.6 536,289 + Sama_0437 0.42 +0.3 536,289 + Sama_0437 0.42 +0.5 536,289 + Sama_0437 0.42 +1.3 536,289 + Sama_0437 0.42 +0.1 536,289 + Sama_0437 0.42 +0.5 536,289 + Sama_0437 0.42 -0.4 536,289 + Sama_0437 0.42 -0.3 536,289 + Sama_0437 0.42 -0.7 536,289 + Sama_0437 0.42 -0.7 536,289 + Sama_0437 0.42 -2.1 536,290 - Sama_0437 0.42 +0.6 536,290 - Sama_0437 0.42 -1.9 536,290 - Sama_0437 0.42 +0.2 536,290 - Sama_0437 0.42 +1.3 536,290 - Sama_0437 0.42 +0.0 536,423 + Sama_0437 0.61 -1.7 536,423 + Sama_0437 0.61 -1.7 536,423 + Sama_0437 0.61 -0.6 536,424 - Sama_0437 0.61 -0.3 536,424 - Sama_0437 0.61 +0.6 536,424 - Sama_0437 0.61 +0.1 536,432 + Sama_0437 0.62 +1.7 536,433 - Sama_0437 0.62 -0.5 536,465 + Sama_0437 0.67 -1.3 536,509 + Sama_0437 0.73 +0.3 536,509 + Sama_0437 0.73 -0.9 536,510 - Sama_0437 0.73 -0.8 536,582 + Sama_0437 0.83 -1.0 536,592 - Sama_0437 0.84 +0.0 536,592 - Sama_0437 0.84 -0.9 536,594 + Sama_0437 0.85 +0.9 536,594 + Sama_0437 0.85 +0.9 536,595 - Sama_0437 0.85 -0.7 536,595 - Sama_0437 0.85 +0.3 536,682 + -0.1 536,682 + +0.3 536,683 - +0.9 536,683 - +0.0 536,683 - +0.9 536,683 - +1.2 536,686 + -1.8 536,686 + -0.1 536,686 + +0.7 536,723 + -0.5 536,724 - -1.1 536,879 + -0.2 536,879 + +0.7
Or see this region's nucleotide sequence