Strain Fitness in Shewanella amazonensis SB2B around Sama_3529

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
4,161,094	+	moaC	Sama_3526	0.45	-3.8
4,161,095	-	moaC	Sama_3526	0.46	-1.8
4,161,095	-	moaC	Sama_3526	0.46	+0.2
4,161,175	+	moaC	Sama_3526	0.62	-1.8
4,161,175	+	moaC	Sama_3526	0.62	-4.3
4,161,176	-	moaC	Sama_3526	0.63	-2.0
4,161,257	+	moaC	Sama_3526	0.80	-1.4
4,161,257	+	moaC	Sama_3526	0.80	-2.7
4,161,257	+	moaC	Sama_3526	0.80	-2.4
4,161,257	+	moaC	Sama_3526	0.80	-2.3
4,161,257	+	moaC	Sama_3526	0.80	-2.2
4,161,257	+	moaC	Sama_3526	0.80	-2.3
4,161,258	-	moaC	Sama_3526	0.80	-1.6
4,161,258	-	moaC	Sama_3526	0.80	-2.9
4,161,258	-	moaC	Sama_3526	0.80	-3.7
4,161,258	-	moaC	Sama_3526	0.80	-2.8
4,161,258	-	moaC	Sama_3526	0.80	-2.9
4,161,262	+	moaC	Sama_3526	0.81	-1.2
4,161,262	+	moaC	Sama_3526	0.81	-0.8
4,161,262	+	moaC	Sama_3526	0.81	-3.1
4,161,263	-	moaC	Sama_3526	0.81	-2.5
4,161,263	-	moaC	Sama_3526	0.81	-2.5
4,161,263	-	moaC	Sama_3526	0.81	+0.2
4,161,263	-	moaC	Sama_3526	0.81	-3.7
4,161,263	-	moaC	Sama_3526	0.81	-1.8
4,161,303	+	moaC	Sama_3526	0.89	-2.0
4,161,304	-	moaC	Sama_3526	0.90	-1.6
4,161,304	-	moaC	Sama_3526	0.90	-3.1
4,161,350	+				-0.1
4,161,350	+				+1.2
4,161,350	+				+2.7
4,161,350	+				+0.0
4,161,350	+				+0.2
4,161,350	+				-0.2
4,161,350	+				+0.4
4,161,350	+				-2.3
4,161,350	+				+1.2
4,161,351	-				-1.4
4,161,351	-				-1.2
4,161,351	-				-1.8
4,161,351	-				-2.9
4,161,351	-				-3.1
4,161,351	-				-3.5
4,161,351	-				-1.4
4,161,357	+				-2.7
4,161,357	+				-2.5
4,161,357	+				-2.9
4,161,357	+				-1.8
4,161,363	+				-3.2
4,161,363	+				-0.2
4,161,363	+				-3.5
4,161,363	+				-0.4
4,161,364	-				-2.9
4,161,364	-				-3.3
4,161,364	-				-2.8
4,161,364	-				-2.5
4,161,364	-				-1.4
4,161,386	+		Sama_3527	0.11	-2.7
4,161,386	+		Sama_3527	0.11	-1.2
4,161,387	-		Sama_3527	0.12	-2.9
4,161,420	-		Sama_3527	0.25	-2.3
4,161,497	+		Sama_3527	0.55	-0.6
4,161,497	+		Sama_3527	0.55	-1.3
4,161,498	-		Sama_3527	0.56	-3.5
4,161,498	-		Sama_3527	0.56	-2.3
4,161,498	-		Sama_3527	0.56	-3.2
4,161,498	-		Sama_3527	0.56	-2.1
4,161,498	-		Sama_3527	0.56	-0.8
4,161,500	+		Sama_3527	0.56	-0.7
4,161,500	+		Sama_3527	0.56	-1.4
4,161,500	+		Sama_3527	0.56	-3.4
4,161,501	-		Sama_3527	0.57	-1.4
4,161,501	-		Sama_3527	0.57	-3.6
4,161,610	+				-1.6
4,161,610	+				-0.8
4,161,610	+				-2.0
4,161,611	-				-0.8
4,161,665	+		Sama_3528	0.12	-3.8
4,161,665	+		Sama_3528	0.12	-1.8
4,161,665	+		Sama_3528	0.12	-2.6
4,161,665	+		Sama_3528	0.12	-3.4
4,161,666	-		Sama_3528	0.12	-3.6
4,161,773	+		Sama_3528	0.35	+1.2
4,161,773	+		Sama_3528	0.35	-1.6
4,161,774	-		Sama_3528	0.36	-3.0
4,161,898	+		Sama_3528	0.63	-1.9
4,161,898	+		Sama_3528	0.63	-3.6
4,161,898	+		Sama_3528	0.63	-2.2
4,161,899	-		Sama_3528	0.63	-2.0
4,161,899	-		Sama_3528	0.63	-3.1
4,161,899	-		Sama_3528	0.63	-2.9
4,161,899	-		Sama_3528	0.63	-1.3
4,161,899	-		Sama_3528	0.63	-2.4
4,162,067	+				-1.2
4,162,067	+				-0.8
4,162,067	+				-0.3
4,162,067	+				-0.7
4,162,068	-				-0.8
4,162,100	+				-1.7
4,162,100	+				+1.2
4,162,101	-				+0.3
4,162,101	-				+0.1
4,162,101	-				+0.3
4,162,101	-				+0.7
4,162,101	-				-0.5
4,162,115	+				-0.1
4,162,115	+				+0.2
4,162,115	+				-1.0
4,162,115	+				+0.7
4,162,116	-				-0.4
4,162,116	-				-0.9
4,162,116	-				-0.9
4,162,116	-				-0.4
4,162,116	-				-0.2
4,162,116	-				-1.5
4,162,116	-				-0.0
4,162,122	+				+0.5
4,162,194	+		Sama_3529	0.13	-1.8
4,162,194	+		Sama_3529	0.13	-1.4
4,162,194	+		Sama_3529	0.13	-1.1
4,162,194	+		Sama_3529	0.13	-0.8
4,162,194	+		Sama_3529	0.13	-0.8
4,162,194	+		Sama_3529	0.13	+0.7
4,162,194	+		Sama_3529	0.13	-0.6
4,162,195	-		Sama_3529	0.13	+0.2
4,162,195	-		Sama_3529	0.13	-0.2
4,162,214	+		Sama_3529	0.15	+1.5
4,162,214	+		Sama_3529	0.15	+2.2
4,162,214	+		Sama_3529	0.15	-0.1
4,162,214	+		Sama_3529	0.15	-0.2
4,162,214	+		Sama_3529	0.15	+0.3
4,162,214	+		Sama_3529	0.15	-1.3
4,162,214	+		Sama_3529	0.15	+0.5
4,162,214	+		Sama_3529	0.15	+0.1
4,162,214	+		Sama_3529	0.15	+0.3
4,162,214	+		Sama_3529	0.15	-1.4
4,162,214	+		Sama_3529	0.15	+0.8
4,162,214	+		Sama_3529	0.15	+1.2
4,162,214	+		Sama_3529	0.15	-0.1
4,162,215	-		Sama_3529	0.15	-0.8
4,162,215	-		Sama_3529	0.15	+0.4
4,162,215	-		Sama_3529	0.15	+1.7
4,162,215	-		Sama_3529	0.15	-1.2
4,162,215	-		Sama_3529	0.15	+0.3
4,162,215	-		Sama_3529	0.15	-0.6
4,162,215	-		Sama_3529	0.15	-0.6
4,162,215	-		Sama_3529	0.15	+0.3
4,162,215	-		Sama_3529	0.15	-0.2
4,162,215	-		Sama_3529	0.15	-0.9
4,162,215	-		Sama_3529	0.15	-0.7
4,162,246	-		Sama_3529	0.19	+1.0
4,162,246	-		Sama_3529	0.19	-0.0
4,162,261	+		Sama_3529	0.21	-0.4
4,162,339	+		Sama_3529	0.31	+0.3
4,162,339	+		Sama_3529	0.31	-1.6
4,162,339	+		Sama_3529	0.31	-0.6
4,162,339	+		Sama_3529	0.31	+0.1
4,162,339	+		Sama_3529	0.31	-0.3
4,162,339	+		Sama_3529	0.31	-0.2
4,162,339	+		Sama_3529	0.31	-0.3
4,162,339	+		Sama_3529	0.31	+0.2
4,162,340	-		Sama_3529	0.31	-0.1
4,162,340	-		Sama_3529	0.31	+1.0
4,162,340	-		Sama_3529	0.31	-1.1
4,162,340	-		Sama_3529	0.31	-0.5
4,162,340	-		Sama_3529	0.31	-0.3
4,162,340	-		Sama_3529	0.31	-1.1
4,162,343	+		Sama_3529	0.32	+1.7
4,162,343	+		Sama_3529	0.32	+0.3
4,162,343	+		Sama_3529	0.32	-1.4
4,162,343	+		Sama_3529	0.32	+0.2
4,162,343	+		Sama_3529	0.32	-0.7
4,162,343	+		Sama_3529	0.32	-2.2
4,162,343	+		Sama_3529	0.32	-1.5
4,162,343	+		Sama_3529	0.32	-0.6
4,162,343	+		Sama_3529	0.32	-0.0
4,162,344	-		Sama_3529	0.32	-0.4
4,162,344	-		Sama_3529	0.32	-0.5
4,162,344	-		Sama_3529	0.32	+0.4
4,162,344	-		Sama_3529	0.32	+0.6
4,162,344	-		Sama_3529	0.32	-1.0
4,162,387	-		Sama_3529	0.37	+0.2
4,162,387	-		Sama_3529	0.37	-1.3
4,162,387	-		Sama_3529	0.37	-2.4
4,162,387	-		Sama_3529	0.37	+0.4
4,162,390	+		Sama_3529	0.38	+0.2
4,162,390	+		Sama_3529	0.38	+0.4
4,162,390	+		Sama_3529	0.38	+0.6
4,162,390	+		Sama_3529	0.38	-0.1
4,162,391	-		Sama_3529	0.38	-0.0
4,162,391	-		Sama_3529	0.38	+0.5
4,162,391	-		Sama_3529	0.38	+0.9
4,162,391	-		Sama_3529	0.38	-0.5
4,162,391	-		Sama_3529	0.38	-0.5
4,162,391	-		Sama_3529	0.38	-0.8
4,162,391	-		Sama_3529	0.38	+0.8
4,162,391	-		Sama_3529	0.38	-0.5
4,162,391	-		Sama_3529	0.38	-0.4
4,162,391	-		Sama_3529	0.38	+1.2
4,162,391	-		Sama_3529	0.38	-0.3
4,162,391	-		Sama_3529	0.38	+0.2
4,162,391	-		Sama_3529	0.38	-0.2
4,162,391	-		Sama_3529	0.38	+0.4
4,162,396	+		Sama_3529	0.38	+0.7
4,162,396	+		Sama_3529	0.38	-0.4
4,162,396	+		Sama_3529	0.38	+0.2
4,162,396	+		Sama_3529	0.38	-0.4
4,162,396	+		Sama_3529	0.38	-1.4
4,162,397	-		Sama_3529	0.39	-0.0
4,162,397	-		Sama_3529	0.39	-0.0
4,162,397	-		Sama_3529	0.39	-0.6
4,162,520	+		Sama_3529	0.54	+0.4
4,162,529	-		Sama_3529	0.55	-0.6
4,162,581	+		Sama_3529	0.62	-0.6
4,162,582	-		Sama_3529	0.62	-0.2
4,162,658	+		Sama_3529	0.72	+0.3
4,162,658	+		Sama_3529	0.72	-0.1
4,162,658	+		Sama_3529	0.72	-0.0
4,162,658	+		Sama_3529	0.72	-0.4
4,162,658	+		Sama_3529	0.72	+0.6
4,162,658	+		Sama_3529	0.72	-0.6
4,162,658	+		Sama_3529	0.72	-0.4
4,162,659	-		Sama_3529	0.72	-2.0
4,162,659	-		Sama_3529	0.72	-0.5
4,162,708	+		Sama_3529	0.78	-1.1
4,162,708	+		Sama_3529	0.78	+0.4
4,162,708	+		Sama_3529	0.78	-1.6
4,162,708	+		Sama_3529	0.78	+0.7
4,162,709	-		Sama_3529	0.78	+0.1
4,162,709	-		Sama_3529	0.78	-0.3
4,162,709	-		Sama_3529	0.78	-1.4
4,162,760	+		Sama_3529	0.85	+0.2
4,162,760	+		Sama_3529	0.85	+0.9
4,162,760	+		Sama_3529	0.85	-1.8
4,162,760	+		Sama_3529	0.85	+0.4
4,162,795	+		Sama_3529	0.89	-0.4
4,162,795	+		Sama_3529	0.89	+0.0
4,162,795	+		Sama_3529	0.89	-0.2
4,162,795	+		Sama_3529	0.89	-0.7
4,162,795	+		Sama_3529	0.89	-0.9
4,162,796	-		Sama_3529	0.89	-0.2
4,162,796	-		Sama_3529	0.89	-0.3
4,162,796	-		Sama_3529	0.89	-1.0
4,162,801	+		Sama_3529	0.90	-0.4
4,162,801	+		Sama_3529	0.90	+0.4
4,162,801	+		Sama_3529	0.90	+2.2
4,162,802	-		Sama_3529	0.90	+0.8
4,162,802	-		Sama_3529	0.90	-0.8
4,162,802	-		Sama_3529	0.90	-1.8
4,162,802	-		Sama_3529	0.90	+0.7
4,162,805	+				-0.7
4,162,805	+				+0.6
4,162,824	+				-0.6
4,162,824	+				+0.1
4,162,824	+				-0.6
4,162,824	+				+0.0
4,162,824	+				-1.4
4,162,824	+				-0.3
4,162,824	+				-0.4
4,162,824	+				-0.0
4,162,825	-				+0.0
4,162,825	-				-0.4
4,162,825	-				-0.4
4,162,825	-				+0.4
4,162,840	+				+0.2
4,162,933	+				-0.6
4,162,933	+				-0.1
4,162,933	+				+0.5
4,162,933	+				-1.4
4,162,934	-				+1.2
4,162,934	-				+1.2
4,162,934	-				-2.4
4,162,934	-				-0.2
4,162,934	-				-1.5
4,162,954	+		Sama_3530	0.11	-0.6
4,162,955	-		Sama_3530	0.11	-0.4
4,162,955	-		Sama_3530	0.11	+0.6
4,162,955	-		Sama_3530	0.11	-0.4
4,162,955	-		Sama_3530	0.11	-1.2
4,162,955	-		Sama_3530	0.11	-0.4
4,162,955	-		Sama_3530	0.11	-1.0
4,162,977	+		Sama_3530	0.14	+0.7
4,162,977	+		Sama_3530	0.14	-0.1
4,162,978	-		Sama_3530	0.14	+0.5
4,162,978	-		Sama_3530	0.14	+0.0
4,162,978	-		Sama_3530	0.14	-0.5
4,162,995	-		Sama_3530	0.17	-0.8
4,163,032	+		Sama_3530	0.22	-0.2
4,163,032	+		Sama_3530	0.22	-0.6
4,163,033	-		Sama_3530	0.22	-0.1
4,163,033	-		Sama_3530	0.22	-1.2
4,163,033	-		Sama_3530	0.22	-0.0
4,163,033	-		Sama_3530	0.22	+0.4
4,163,033	-		Sama_3530	0.22	+0.8
4,163,042	+		Sama_3530	0.24	+0.2
4,163,042	+		Sama_3530	0.24	+0.7
4,163,042	+		Sama_3530	0.24	+0.2
4,163,042	+		Sama_3530	0.24	+0.6
4,163,043	-		Sama_3530	0.24	+0.4
4,163,043	-		Sama_3530	0.24	-0.2
4,163,050	+		Sama_3530	0.25	+1.0
4,163,050	+		Sama_3530	0.25	+0.6
4,163,050	+		Sama_3530	0.25	-0.8
4,163,050	+		Sama_3530	0.25	-0.4
4,163,051	-		Sama_3530	0.25	-0.5
4,163,051	-		Sama_3530	0.25	-2.1
4,163,051	-		Sama_3530	0.25	+0.3
4,163,051	-		Sama_3530	0.25	+0.3
4,163,051	-		Sama_3530	0.25	+0.6
4,163,051	-		Sama_3530	0.25	+0.2
4,163,051	-		Sama_3530	0.25	+0.7
4,163,051	-		Sama_3530	0.25	-1.4
4,163,051	-		Sama_3530	0.25	+0.1
4,163,055	+		Sama_3530	0.26	-0.2
4,163,055	+		Sama_3530	0.26	-0.5
4,163,055	+		Sama_3530	0.26	+0.5
4,163,055	+		Sama_3530	0.26	+1.4
4,163,055	+		Sama_3530	0.26	-0.4
4,163,055	+		Sama_3530	0.26	+0.0
4,163,055	+		Sama_3530	0.26	-0.2
4,163,056	-		Sama_3530	0.26	-0.1
4,163,056	-		Sama_3530	0.26	-0.3
4,163,058	+		Sama_3530	0.26	+0.6
4,163,058	+		Sama_3530	0.26	-1.3
4,163,058	+		Sama_3530	0.26	-0.3
4,163,058	+		Sama_3530	0.26	+0.2
4,163,059	-		Sama_3530	0.26	+0.3
4,163,059	-		Sama_3530	0.26	-0.6
4,163,059	-		Sama_3530	0.26	-0.6
4,163,111	+		Sama_3530	0.34	+1.2
4,163,152	+		Sama_3530	0.40	+0.9
4,163,153	-		Sama_3530	0.40	+0.4
4,163,175	-		Sama_3530	0.43	-0.1
4,163,175	-		Sama_3530	0.43	+0.7
4,163,197	+		Sama_3530	0.47	-1.2
4,163,198	-		Sama_3530	0.47	+1.4
4,163,261	+		Sama_3530	0.56	+0.4
4,163,261	+		Sama_3530	0.56	-0.2
4,163,261	+		Sama_3530	0.56	+0.2
4,163,261	+		Sama_3530	0.56	-0.5
4,163,262	-		Sama_3530	0.56	-0.6
4,163,283	-		Sama_3530	0.59	+0.2
4,163,344	+		Sama_3530	0.68	-0.1
4,163,344	+		Sama_3530	0.68	-1.2
4,163,344	+		Sama_3530	0.68	-1.0
4,163,344	+		Sama_3530	0.68	+1.2
4,163,344	+		Sama_3530	0.68	-0.1
4,163,344	+		Sama_3530	0.68	+0.5
4,163,344	+		Sama_3530	0.68	-0.3
4,163,345	-		Sama_3530	0.68	+0.2
4,163,345	-		Sama_3530	0.68	-0.4
4,163,345	-		Sama_3530	0.68	+0.5
4,163,345	-		Sama_3530	0.68	-1.6
4,163,345	-		Sama_3530	0.68	+0.2
4,163,345	-		Sama_3530	0.68	+0.1
4,163,345	-		Sama_3530	0.68	-0.6
4,163,345	-		Sama_3530	0.68	+0.5
4,163,345	-		Sama_3530	0.68	-0.2
4,163,384	+		Sama_3530	0.74	-0.8
4,163,421	+		Sama_3530	0.80	-0.1
4,163,421	+		Sama_3530	0.80	-0.0
4,163,421	+		Sama_3530	0.80	-0.0
4,163,422	-		Sama_3530	0.80	+1.2
4,163,422	-		Sama_3530	0.80	-1.3
4,163,471	+		Sama_3530	0.87	-0.5
4,163,471	+		Sama_3530	0.87	+0.2
4,163,471	+		Sama_3530	0.87	+0.4
4,163,471	+		Sama_3530	0.87	+0.1
4,163,471	+		Sama_3530	0.87	-0.1
4,163,472	-		Sama_3530	0.87	-0.2
4,163,472	-		Sama_3530	0.87	-0.9
4,163,472	-		Sama_3530	0.87	-0.8
4,163,472	-		Sama_3530	0.87	-0.7
4,163,472	-		Sama_3530	0.87	+0.2
4,163,574	+				+0.4
4,163,575	-				+1.2
4,163,591	+				-2.0
4,163,591	+				+0.4
4,163,591	+				+2.2
4,163,591	+				+0.6
4,163,591	+				+2.2
4,163,592	-				+0.4
4,163,592	-				-0.0
4,163,592	-				-0.0
4,163,592	-				-0.2
4,163,592	-				+0.3
4,163,595	+				+0.0
4,163,595	+				+0.7
4,163,595	+				-1.6
4,163,596	-				-0.7
4,163,596	-				+0.8
4,163,596	-				-1.2
4,163,596	-				+0.2
4,163,596	-				-0.5
4,163,596	-				-0.8
4,163,596	-				-0.5
4,163,596	-				-1.0
4,163,596	-				-0.5
4,163,610	+				-0.4
4,163,610	+				+0.0
4,163,610	+				+0.8
4,163,611	-				+0.2
4,163,784	+		Sama_3531	0.22	-0.2
4,163,784	+		Sama_3531	0.22	-0.6
4,163,785	-		Sama_3531	0.22	-0.4
4,163,785	-		Sama_3531	0.22	-1.0
4,163,785	-		Sama_3531	0.22	-0.2
4,163,785	-		Sama_3531	0.22	-1.2
4,163,785	-		Sama_3531	0.22	-0.8
4,163,786	+		Sama_3531	0.22	+0.4
4,163,786	+		Sama_3531	0.22	-1.0
4,163,786	+		Sama_3531	0.22	-0.3
4,163,786	+		Sama_3531	0.22	-0.1
4,163,786	+		Sama_3531	0.22	+0.2
4,163,786	+		Sama_3531	0.22	-0.3
4,163,786	+		Sama_3531	0.22	+0.6
4,163,786	+		Sama_3531	0.22	-1.3
4,163,786	+		Sama_3531	0.22	-0.5
4,163,786	+		Sama_3531	0.22	-1.6
4,163,786	+		Sama_3531	0.22	-0.4
4,163,787	-		Sama_3531	0.22	+0.0
4,163,787	-		Sama_3531	0.22	-0.3
4,163,787	-		Sama_3531	0.22	+0.0
4,163,787	-		Sama_3531	0.22	+0.6
4,163,787	-		Sama_3531	0.22	+0.6
4,163,787	-		Sama_3531	0.22	-0.1
4,163,787	-		Sama_3531	0.22	+0.3
4,163,787	-		Sama_3531	0.22	-0.5
4,163,787	-		Sama_3531	0.22	-0.1
4,163,787	-		Sama_3531	0.22	-0.5
4,163,787	-		Sama_3531	0.22	-0.0
4,163,787	-		Sama_3531	0.22	-0.1
4,163,787	-		Sama_3531	0.22	+0.9
4,163,787	-		Sama_3531	0.22	-0.9
4,163,787	-		Sama_3531	0.22	-0.1
4,163,787	-		Sama_3531	0.22	-1.1
4,163,787	-		Sama_3531	0.22	+1.5
4,163,787	-		Sama_3531	0.22	-0.4