Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3807 and Dshi_3808 are separated by 4 nucleotides Dshi_3808 and Dshi_3809 overlap by 4 nucleotides Dshi_3809 and Dshi_3810 are separated by 7 nucleotides Dshi_3810 and Dshi_3811 are separated by 42 nucleotides
Dshi_3807: Dshi_3807 - NADH dehydrogenase (quinone) (RefSeq), at 16,179 to 17,699
_3807
Dshi_3808: Dshi_3808 - cation antiporter (RefSeq), at 17,704 to 18,195
_3808
Dshi_3809: Dshi_3809 - multiple resistance and pH regulation protein F (RefSeq), at 18,192 to 18,461
_3809
Dshi_3810: Dshi_3810 - monovalent cation/proton antiporter, MnhG/PhaG subunit (RefSeq), at 18,469 to 18,858
_3810
Dshi_3811: Dshi_3811 - fumarylacetoacetase (RefSeq), at 18,901 to 20,142
_3811
Position (kb) 18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 17.671 kb on - strand at 17.785 kb on - strand, within Dshi_3808 at 17.820 kb on + strand, within Dshi_3808 at 18.738 kb on + strand, within Dshi_3810 at 18.738 kb on + strand, within Dshi_3810 at 18.783 kb on - strand, within Dshi_3810 at 18.783 kb on - strand, within Dshi_3810 at 18.805 kb on + strand, within Dshi_3810 at 18.985 kb on - strand at 19.167 kb on - strand, within Dshi_3811 at 19.371 kb on + strand, within Dshi_3811 at 19.435 kb on + strand, within Dshi_3811 at 19.454 kb on + strand at 19.717 kb on + strand, within Dshi_3811 at 19.772 kb on + strand, within Dshi_3811 at 19.806 kb on - strand, within Dshi_3811 at 19.806 kb on - strand, within Dshi_3811
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 17,671 - +2.7 17,785 - Dshi_3808 0.16 -1.7 17,820 + Dshi_3808 0.24 -1.1 18,738 + Dshi_3810 0.69 -4.7 18,738 + Dshi_3810 0.69 -2.7 18,783 - Dshi_3810 0.81 -1.6 18,783 - Dshi_3810 0.81 -0.6 18,805 + Dshi_3810 0.86 -1.3 18,985 - -0.5 19,167 - Dshi_3811 0.21 +0.4 19,371 + Dshi_3811 0.38 -2.1 19,435 + Dshi_3811 0.43 -0.1 19,454 + +0.2 19,717 + Dshi_3811 0.66 -1.8 19,772 + Dshi_3811 0.70 -0.1 19,806 - Dshi_3811 0.73 -0.2 19,806 - Dshi_3811 0.73 +0.0
Or see this region's nucleotide sequence