Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3472

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3471 and Dshi_3472 are separated by 78 nucleotidesDshi_3472 and Dshi_3473 are separated by 107 nucleotides Dshi_3471: Dshi_3471 - protein of unknown function DUF898 transmembrane (RefSeq), at 3,653,928 to 3,654,965 _3471 Dshi_3472: Dshi_3472 - Argininosuccinate synthase (RefSeq), at 3,655,044 to 3,656,264 _3472 Dshi_3473: Dshi_3473 - threonine dehydratase (RefSeq), at 3,656,372 to 3,657,613 _3473 Position (kb) 3655 3656 3657Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3654.063 kb on - strand, within Dshi_3471at 3654.087 kb on + strand, within Dshi_3471at 3654.087 kb on + strand, within Dshi_3471at 3654.192 kb on + strand, within Dshi_3471at 3654.237 kb on - strand, within Dshi_3471at 3654.237 kb on - strand, within Dshi_3471at 3654.239 kb on + strand, within Dshi_3471at 3654.247 kb on - strand, within Dshi_3471at 3654.295 kb on - strand, within Dshi_3471at 3654.319 kb on + strand, within Dshi_3471at 3654.378 kb on + strand, within Dshi_3471at 3654.386 kb on - strand, within Dshi_3471at 3654.429 kb on - strand, within Dshi_3471at 3654.450 kb on + strand, within Dshi_3471at 3654.477 kb on - strand, within Dshi_3471at 3654.627 kb on + strand, within Dshi_3471at 3654.858 kb on + strand, within Dshi_3471at 3654.871 kb on - strandat 3655.581 kb on - strand, within Dshi_3472at 3655.749 kb on - strand, within Dshi_3472at 3655.839 kb on - strand, within Dshi_3472at 3655.887 kb on - strand, within Dshi_3472at 3656.319 kb on + strandat 3656.319 kb on + strandat 3656.319 kb on + strandat 3656.319 kb on + strandat 3656.319 kb on + strandat 3656.327 kb on - strandat 3656.368 kb on + strandat 3656.438 kb on - strandat 3656.459 kb on - strandat 3656.490 kb on - strandat 3656.501 kb on + strand, within Dshi_3473at 3656.501 kb on + strand, within Dshi_3473at 3656.516 kb on - strand, within Dshi_3473at 3656.568 kb on - strand, within Dshi_3473at 3656.608 kb on + strand, within Dshi_3473at 3656.629 kb on - strand, within Dshi_3473at 3656.629 kb on - strand, within Dshi_3473at 3656.647 kb on + strand, within Dshi_3473at 3656.659 kb on + strand, within Dshi_3473at 3656.659 kb on - strand, within Dshi_3473at 3656.668 kb on + strand, within Dshi_3473at 3656.756 kb on - strand, within Dshi_3473at 3656.771 kb on + strand, within Dshi_3473at 3656.786 kb on + strand, within Dshi_3473at 3656.833 kb on + strand, within Dshi_3473at 3656.875 kb on + strand, within Dshi_3473at 3656.875 kb on + strand, within Dshi_3473at 3656.875 kb on + strand, within Dshi_3473at 3656.883 kb on - strand, within Dshi_3473at 3656.884 kb on - strand, within Dshi_3473at 3656.929 kb on - strand, within Dshi_3473at 3656.953 kb on + strand, within Dshi_3473at 3656.954 kb on - strand, within Dshi_3473at 3656.968 kb on + strand, within Dshi_3473at 3656.975 kb on - strand, within Dshi_3473at 3657.147 kb on + strand, within Dshi_3473at 3657.236 kb on - strand, within Dshi_3473

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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3,654,063 - Dshi_3471 0.13 -0.2
3,654,087 + Dshi_3471 0.15 +2.5
3,654,087 + Dshi_3471 0.15 +1.2
3,654,192 + Dshi_3471 0.25 -0.7
3,654,237 - Dshi_3471 0.30 -0.6
3,654,237 - Dshi_3471 0.30 +0.5
3,654,239 + Dshi_3471 0.30 -1.0
3,654,247 - Dshi_3471 0.31 +1.6
3,654,295 - Dshi_3471 0.35 -1.0
3,654,319 + Dshi_3471 0.38 -1.2
3,654,378 + Dshi_3471 0.43 -1.2
3,654,386 - Dshi_3471 0.44 +3.7
3,654,429 - Dshi_3471 0.48 +0.3
3,654,450 + Dshi_3471 0.50 -0.0
3,654,477 - Dshi_3471 0.53 +0.5
3,654,627 + Dshi_3471 0.67 -0.0
3,654,858 + Dshi_3471 0.90 +0.1
3,654,871 - -0.6
3,655,581 - Dshi_3472 0.44 -2.4
3,655,749 - Dshi_3472 0.58 +0.4
3,655,839 - Dshi_3472 0.65 -1.2
3,655,887 - Dshi_3472 0.69 +1.4
3,656,319 + +1.1
3,656,319 + +0.4
3,656,319 + -1.0
3,656,319 + -4.3
3,656,319 + +0.6
3,656,327 - +1.3
3,656,368 + +0.2
3,656,438 - -0.8
3,656,459 - -1.6
3,656,490 - -0.6
3,656,501 + Dshi_3473 0.10 -1.4
3,656,501 + Dshi_3473 0.10 +1.0
3,656,516 - Dshi_3473 0.12 +0.3
3,656,568 - Dshi_3473 0.16 -0.1
3,656,608 + Dshi_3473 0.19 -1.5
3,656,629 - Dshi_3473 0.21 -1.2
3,656,629 - Dshi_3473 0.21 +1.0
3,656,647 + Dshi_3473 0.22 +4.3
3,656,659 + Dshi_3473 0.23 -2.9
3,656,659 - Dshi_3473 0.23 +0.1
3,656,668 + Dshi_3473 0.24 -3.9
3,656,756 - Dshi_3473 0.31 +0.1
3,656,771 + Dshi_3473 0.32 -1.8
3,656,786 + Dshi_3473 0.33 +0.9
3,656,833 + Dshi_3473 0.37 +2.1
3,656,875 + Dshi_3473 0.40 +3.2
3,656,875 + Dshi_3473 0.40 +2.9
3,656,875 + Dshi_3473 0.40 -0.0
3,656,883 - Dshi_3473 0.41 +0.9
3,656,884 - Dshi_3473 0.41 -0.1
3,656,929 - Dshi_3473 0.45 -0.1
3,656,953 + Dshi_3473 0.47 -0.8
3,656,954 - Dshi_3473 0.47 -0.9
3,656,968 + Dshi_3473 0.48 +1.5
3,656,975 - Dshi_3473 0.49 -2.2
3,657,147 + Dshi_3473 0.62 -1.5
3,657,236 - Dshi_3473 0.70 +0.1

Or see this region's nucleotide sequence