Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0098

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0096 and Dshi_0097 are separated by 379 nucleotidesDshi_0097 and Dshi_0098 overlap by 4 nucleotidesDshi_0098 and Dshi_0099 are separated by 141 nucleotidesDshi_0099 and Dshi_0100 are separated by 67 nucleotides Dshi_0096: Dshi_0096 - hypothetical protein (RefSeq), at 94,244 to 94,774 _0096 Dshi_0097: Dshi_0097 - hypothetical protein (RefSeq), at 95,154 to 95,567 _0097 Dshi_0098: Dshi_0098 - hypothetical protein (RefSeq), at 95,564 to 96,019 _0098 Dshi_0099: Dshi_0099 - hypothetical protein (RefSeq), at 96,161 to 96,931 _0099 Dshi_0100: Dshi_0100 - transposase, putative (RefSeq), at 96,999 to 98,882 _0100 Position (kb) 95 96 97Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 94.671 kb on - strand, within Dshi_0096at 94.746 kb on + strandat 94.803 kb on - strandat 94.930 kb on + strandat 95.055 kb on - strandat 95.091 kb on - strandat 95.130 kb on + strandat 95.218 kb on + strand, within Dshi_0097at 95.257 kb on - strand, within Dshi_0097at 95.262 kb on - strand, within Dshi_0097at 95.270 kb on - strand, within Dshi_0097at 95.270 kb on - strand, within Dshi_0097at 95.283 kb on - strand, within Dshi_0097at 95.286 kb on + strand, within Dshi_0097at 95.300 kb on - strand, within Dshi_0097at 95.387 kb on - strand, within Dshi_0097at 95.452 kb on + strand, within Dshi_0097at 95.455 kb on - strand, within Dshi_0097at 95.455 kb on - strand, within Dshi_0097at 95.485 kb on + strand, within Dshi_0097at 95.493 kb on - strand, within Dshi_0097at 95.787 kb on + strand, within Dshi_0098at 95.787 kb on + strand, within Dshi_0098at 95.787 kb on + strand, within Dshi_0098at 95.795 kb on - strand, within Dshi_0098at 95.796 kb on - strand, within Dshi_0098at 95.831 kb on - strand, within Dshi_0098at 95.864 kb on - strand, within Dshi_0098at 95.939 kb on + strand, within Dshi_0098at 96.021 kb on + strandat 96.038 kb on + strandat 96.095 kb on + strandat 96.102 kb on + strandat 96.114 kb on + strandat 96.120 kb on + strandat 96.128 kb on - strandat 96.128 kb on - strandat 96.131 kb on + strandat 96.139 kb on - strandat 96.161 kb on + strandat 96.192 kb on - strandat 96.192 kb on - strandat 96.204 kb on + strandat 96.237 kb on - strandat 96.237 kb on - strandat 96.237 kb on - strandat 96.266 kb on + strand, within Dshi_0099at 96.283 kb on + strand, within Dshi_0099at 96.285 kb on + strand, within Dshi_0099at 96.307 kb on - strand, within Dshi_0099at 96.382 kb on - strand, within Dshi_0099at 96.382 kb on - strand, within Dshi_0099at 96.389 kb on + strand, within Dshi_0099at 96.397 kb on - strand, within Dshi_0099at 96.397 kb on - strand, within Dshi_0099at 96.518 kb on - strand, within Dshi_0099at 96.519 kb on - strand, within Dshi_0099at 96.634 kb on + strand, within Dshi_0099at 96.634 kb on + strand, within Dshi_0099at 96.634 kb on + strand, within Dshi_0099at 96.634 kb on + strand, within Dshi_0099at 96.634 kb on + strand, within Dshi_0099at 96.634 kb on + strand, within Dshi_0099at 96.634 kb on + strand, within Dshi_0099at 96.634 kb on + strand, within Dshi_0099at 96.642 kb on - strand, within Dshi_0099at 96.642 kb on - strand, within Dshi_0099at 96.642 kb on - strand, within Dshi_0099at 96.642 kb on - strand, within Dshi_0099at 96.642 kb on - strand, within Dshi_0099at 96.642 kb on - strand, within Dshi_0099at 96.642 kb on - strand, within Dshi_0099at 96.657 kb on + strand, within Dshi_0099at 96.665 kb on - strand, within Dshi_0099at 96.666 kb on - strand, within Dshi_0099at 96.678 kb on + strand, within Dshi_0099at 96.725 kb on - strand, within Dshi_0099at 96.728 kb on - strand, within Dshi_0099at 96.728 kb on - strand, within Dshi_0099at 96.773 kb on - strand, within Dshi_0099at 96.803 kb on + strand, within Dshi_0099at 96.810 kb on - strand, within Dshi_0099at 96.855 kb on - strandat 96.897 kb on + strandat 96.940 kb on + strandat 96.940 kb on + strandat 96.948 kb on - strandat 97.009 kb on + strandat 97.009 kb on + strandat 97.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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94,671 - Dshi_0096 0.80 -0.3
94,746 + +0.1
94,803 - +0.2
94,930 + +0.5
95,055 - -0.0
95,091 - -0.0
95,130 + -0.2
95,218 + Dshi_0097 0.15 -1.0
95,257 - Dshi_0097 0.25 +0.1
95,262 - Dshi_0097 0.26 -1.8
95,270 - Dshi_0097 0.28 -2.5
95,270 - Dshi_0097 0.28 -1.0
95,283 - Dshi_0097 0.31 -1.0
95,286 + Dshi_0097 0.32 -1.8
95,300 - Dshi_0097 0.35 -1.1
95,387 - Dshi_0097 0.56 -1.1
95,452 + Dshi_0097 0.72 +1.0
95,455 - Dshi_0097 0.73 -2.1
95,455 - Dshi_0097 0.73 -2.8
95,485 + Dshi_0097 0.80 +4.4
95,493 - Dshi_0097 0.82 -2.5
95,787 + Dshi_0098 0.49 -1.8
95,787 + Dshi_0098 0.49 -4.1
95,787 + Dshi_0098 0.49 -0.8
95,795 - Dshi_0098 0.51 +1.6
95,796 - Dshi_0098 0.51 -1.6
95,831 - Dshi_0098 0.59 -0.3
95,864 - Dshi_0098 0.66 -1.0
95,939 + Dshi_0098 0.82 -1.3
96,021 + +0.7
96,038 + -2.1
96,095 + -0.3
96,102 + +0.8
96,114 + +4.1
96,120 + +0.7
96,128 - +1.8
96,128 - +0.4
96,131 + +1.8
96,139 - +1.8
96,161 + -0.5
96,192 - +1.0
96,192 - -0.3
96,204 + -0.2
96,237 - +4.0
96,237 - +1.0
96,237 - +1.6
96,266 + Dshi_0099 0.14 -0.4
96,283 + Dshi_0099 0.16 -1.4
96,285 + Dshi_0099 0.16 -2.6
96,307 - Dshi_0099 0.19 -1.1
96,382 - Dshi_0099 0.29 +1.0
96,382 - Dshi_0099 0.29 +3.0
96,389 + Dshi_0099 0.30 -0.7
96,397 - Dshi_0099 0.31 -1.7
96,397 - Dshi_0099 0.31 -0.0
96,518 - Dshi_0099 0.46 +1.0
96,519 - Dshi_0099 0.46 -0.0
96,634 + Dshi_0099 0.61 +0.2
96,634 + Dshi_0099 0.61 -0.9
96,634 + Dshi_0099 0.61 -0.8
96,634 + Dshi_0099 0.61 -0.0
96,634 + Dshi_0099 0.61 -0.6
96,634 + Dshi_0099 0.61 +0.3
96,634 + Dshi_0099 0.61 +0.8
96,634 + Dshi_0099 0.61 +0.2
96,642 - Dshi_0099 0.62 -0.0
96,642 - Dshi_0099 0.62 +0.9
96,642 - Dshi_0099 0.62 -1.0
96,642 - Dshi_0099 0.62 -0.7
96,642 - Dshi_0099 0.62 +0.5
96,642 - Dshi_0099 0.62 +0.9
96,642 - Dshi_0099 0.62 -0.5
96,657 + Dshi_0099 0.64 -0.0
96,665 - Dshi_0099 0.65 -1.3
96,666 - Dshi_0099 0.65 +1.0
96,678 + Dshi_0099 0.67 +0.9
96,725 - Dshi_0099 0.73 +0.4
96,728 - Dshi_0099 0.74 -1.8
96,728 - Dshi_0099 0.74 +0.4
96,773 - Dshi_0099 0.79 -1.0
96,803 + Dshi_0099 0.83 -1.3
96,810 - Dshi_0099 0.84 -3.1
96,855 - +0.4
96,897 + +0.2
96,940 + -0.7
96,940 + +1.0
96,948 - +1.0
97,009 + +0.2
97,009 + +0.4
97,017 - -0.6

Or see this region's nucleotide sequence