Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20295 and DDA3937_RS20300 are separated by 2 nucleotides DDA3937_RS20300 and DDA3937_RS20305 are separated by 113 nucleotides DDA3937_RS20305 and DDA3937_RS20310 are separated by 3 nucleotides DDA3937_RS20310 and DDA3937_RS20315 are separated by 3 nucleotides DDA3937_RS20315 and DDA3937_RS20320 are separated by 96 nucleotides
DDA3937_RS20295: DDA3937_RS20295 - porphobilinogen synthase, at 4,622,520 to 4,623,542
_RS20295
DDA3937_RS20300: DDA3937_RS20300 - 3'-5' ssDNA/RNA exonuclease TatD, at 4,623,545 to 4,624,339
_RS20300
DDA3937_RS20305: DDA3937_RS20305 - Sec-independent protein translocase subunit TatC, at 4,624,453 to 4,625,223
_RS20305
DDA3937_RS20310: DDA3937_RS20310 - Sec-independent protein translocase subunit TatB, at 4,625,227 to 4,625,802
_RS20310
DDA3937_RS20315: DDA3937_RS20315 - Sec-independent protein translocase subunit TatA, at 4,625,806 to 4,626,060
_RS20315
DDA3937_RS20320: DDA3937_RS20320 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 4,626,157 to 4,627,794
_RS20320
Position (kb) 4624
4625
4626 Strain fitness (log2 ratio) -2
-1
0
1 at 4623.652 kb on + strand, within DDA3937_RS20300 at 4623.652 kb on + strand, within DDA3937_RS20300 at 4623.652 kb on + strand, within DDA3937_RS20300 at 4623.652 kb on + strand, within DDA3937_RS20300 at 4623.653 kb on - strand, within DDA3937_RS20300 at 4623.701 kb on + strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.720 kb on + strand, within DDA3937_RS20300 at 4623.720 kb on + strand, within DDA3937_RS20300 at 4623.721 kb on - strand, within DDA3937_RS20300 at 4623.931 kb on + strand, within DDA3937_RS20300 at 4623.932 kb on - strand, within DDA3937_RS20300 at 4623.932 kb on - strand, within DDA3937_RS20300 at 4624.177 kb on - strand, within DDA3937_RS20300 at 4624.242 kb on - strand, within DDA3937_RS20300 at 4624.242 kb on - strand, within DDA3937_RS20300 at 4624.280 kb on + strand at 4624.420 kb on + strand at 4624.420 kb on + strand at 4624.421 kb on - strand at 4624.421 kb on - strand at 4624.517 kb on + strand at 4624.518 kb on - strand at 4624.557 kb on - strand, within DDA3937_RS20305 at 4624.641 kb on - strand, within DDA3937_RS20305 at 4624.641 kb on - strand, within DDA3937_RS20305 at 4624.763 kb on + strand, within DDA3937_RS20305 at 4624.764 kb on - strand, within DDA3937_RS20305 at 4624.764 kb on - strand, within DDA3937_RS20305 at 4624.764 kb on - strand, within DDA3937_RS20305 at 4624.848 kb on - strand, within DDA3937_RS20305 at 4624.958 kb on + strand, within DDA3937_RS20305 at 4624.958 kb on + strand, within DDA3937_RS20305 at 4624.959 kb on - strand, within DDA3937_RS20305 at 4624.997 kb on - strand, within DDA3937_RS20305 at 4624.997 kb on - strand, within DDA3937_RS20305 at 4625.001 kb on + strand, within DDA3937_RS20305 at 4625.002 kb on - strand, within DDA3937_RS20305 at 4625.099 kb on + strand at 4625.100 kb on - strand, within DDA3937_RS20305 at 4625.100 kb on - strand, within DDA3937_RS20305 at 4625.100 kb on - strand, within DDA3937_RS20305 at 4625.100 kb on - strand, within DDA3937_RS20305 at 4625.100 kb on - strand, within DDA3937_RS20305 at 4625.224 kb on - strand at 4625.224 kb on - strand at 4625.224 kb on - strand at 4625.224 kb on - strand at 4625.785 kb on - strand at 4625.808 kb on - strand at 4625.820 kb on + strand at 4625.821 kb on - strand at 4625.821 kb on - strand at 4625.821 kb on - strand at 4625.821 kb on - strand at 4625.953 kb on - strand, within DDA3937_RS20315 at 4625.953 kb on - strand, within DDA3937_RS20315 at 4625.953 kb on - strand, within DDA3937_RS20315 at 4626.011 kb on - strand, within DDA3937_RS20315 at 4626.046 kb on - strand at 4626.048 kb on + strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.069 kb on + strand at 4626.070 kb on - strand at 4626.070 kb on - strand at 4626.070 kb on - strand at 4626.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,623,652 + DDA3937_RS20300 0.13 +0.2 4,623,652 + DDA3937_RS20300 0.13 -0.4 4,623,652 + DDA3937_RS20300 0.13 -1.2 4,623,652 + DDA3937_RS20300 0.13 -0.0 4,623,653 - DDA3937_RS20300 0.14 -1.3 4,623,701 + DDA3937_RS20300 0.20 -1.0 4,623,702 - DDA3937_RS20300 0.20 +0.9 4,623,702 - DDA3937_RS20300 0.20 -0.5 4,623,702 - DDA3937_RS20300 0.20 -0.3 4,623,702 - DDA3937_RS20300 0.20 -0.9 4,623,702 - DDA3937_RS20300 0.20 -0.3 4,623,702 - DDA3937_RS20300 0.20 -0.6 4,623,720 + DDA3937_RS20300 0.22 -0.7 4,623,720 + DDA3937_RS20300 0.22 -1.6 4,623,721 - DDA3937_RS20300 0.22 +0.7 4,623,931 + DDA3937_RS20300 0.49 -0.1 4,623,932 - DDA3937_RS20300 0.49 +0.2 4,623,932 - DDA3937_RS20300 0.49 -0.3 4,624,177 - DDA3937_RS20300 0.79 +0.0 4,624,242 - DDA3937_RS20300 0.88 -0.2 4,624,242 - DDA3937_RS20300 0.88 +0.4 4,624,280 + +0.4 4,624,420 + -0.7 4,624,420 + +0.2 4,624,421 - +0.6 4,624,421 - +0.3 4,624,517 + -0.1 4,624,518 - -0.3 4,624,557 - DDA3937_RS20305 0.13 -0.9 4,624,641 - DDA3937_RS20305 0.24 -0.6 4,624,641 - DDA3937_RS20305 0.24 -0.5 4,624,763 + DDA3937_RS20305 0.40 -0.4 4,624,764 - DDA3937_RS20305 0.40 -1.2 4,624,764 - DDA3937_RS20305 0.40 +1.1 4,624,764 - DDA3937_RS20305 0.40 -1.5 4,624,848 - DDA3937_RS20305 0.51 -0.6 4,624,958 + DDA3937_RS20305 0.65 +0.1 4,624,958 + DDA3937_RS20305 0.65 -0.6 4,624,959 - DDA3937_RS20305 0.66 -0.8 4,624,997 - DDA3937_RS20305 0.71 -0.7 4,624,997 - DDA3937_RS20305 0.71 -1.2 4,625,001 + DDA3937_RS20305 0.71 +1.1 4,625,002 - DDA3937_RS20305 0.71 -0.2 4,625,099 + +0.1 4,625,100 - DDA3937_RS20305 0.84 -1.2 4,625,100 - DDA3937_RS20305 0.84 +1.5 4,625,100 - DDA3937_RS20305 0.84 -0.5 4,625,100 - DDA3937_RS20305 0.84 +1.3 4,625,100 - DDA3937_RS20305 0.84 -2.1 4,625,224 - -0.5 4,625,224 - -0.2 4,625,224 - -0.9 4,625,224 - -0.4 4,625,785 - +0.1 4,625,808 - +0.2 4,625,820 + +0.7 4,625,821 - -0.2 4,625,821 - -1.9 4,625,821 - -0.9 4,625,821 - +0.1 4,625,953 - DDA3937_RS20315 0.58 -0.2 4,625,953 - DDA3937_RS20315 0.58 +0.4 4,625,953 - DDA3937_RS20315 0.58 -0.8 4,626,011 - DDA3937_RS20315 0.80 +0.6 4,626,046 - +0.8 4,626,048 + -0.9 4,626,049 - +1.1 4,626,049 - +0.0 4,626,049 - -0.7 4,626,049 - -0.1 4,626,049 - -0.5 4,626,049 - -0.5 4,626,049 - -0.5 4,626,049 - -0.6 4,626,049 - -0.8 4,626,049 - -1.1 4,626,069 + -1.5 4,626,070 - -1.5 4,626,070 - -0.4 4,626,070 - -0.6 4,626,078 - -0.7
Or see this region's nucleotide sequence