Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15255

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,497,110	+		DDA3937_RS15250	0.39	-1.1
3,497,110	+		DDA3937_RS15250	0.39	+0.5
3,497,110	+		DDA3937_RS15250	0.39	-0.6
3,497,111	-		DDA3937_RS15250	0.39	-0.6
3,497,126	-		DDA3937_RS15250	0.40	+0.7
3,497,135	-		DDA3937_RS15250	0.41	+0.2
3,497,156	-		DDA3937_RS15250	0.44	+0.5
3,497,215	+		DDA3937_RS15250	0.50	-1.1
3,497,215	+		DDA3937_RS15250	0.50	-0.3
3,497,300	+		DDA3937_RS15250	0.58	-0.3
3,497,321	-		DDA3937_RS15250	0.61	-0.7
3,497,331	-		DDA3937_RS15250	0.62	+2.3
3,497,331	-		DDA3937_RS15250	0.62	-0.7
3,497,332	+		DDA3937_RS15250	0.62	-1.6
3,497,332	+		DDA3937_RS15250	0.62	-0.1
3,497,332	+		DDA3937_RS15250	0.62	+0.6
3,497,333	-		DDA3937_RS15250	0.62	-0.3
3,497,333	-		DDA3937_RS15250	0.62	-1.1
3,497,380	+		DDA3937_RS15250	0.67	-0.0
3,497,380	+		DDA3937_RS15250	0.67	-0.8
3,497,380	+		DDA3937_RS15250	0.67	+1.2
3,497,381	-		DDA3937_RS15250	0.67	+0.4
3,497,483	+		DDA3937_RS15250	0.77	+0.0
3,497,508	-		DDA3937_RS15250	0.80	-0.6
3,497,530	+		DDA3937_RS15250	0.82	+0.2
3,497,531	-		DDA3937_RS15250	0.82	-0.1
3,497,531	-		DDA3937_RS15250	0.82	-0.1
3,497,531	-		DDA3937_RS15250	0.82	-0.3
3,497,544	-		DDA3937_RS15250	0.84	-1.2
3,497,549	+		DDA3937_RS15250	0.84	-0.1
3,497,670	+				+0.3
3,497,670	+				+0.7
3,497,671	-				+0.0
3,497,671	-				-1.2
3,497,679	+				+0.5
3,497,680	-				+0.7
3,497,680	-				-0.6
3,497,820	+				-1.6
3,497,821	-				+0.7
3,497,836	+				-1.1
3,497,836	+				-0.8
3,497,841	+				-0.2
3,497,841	+				-0.5
3,497,842	-				-2.0
3,497,842	-				+0.2
3,497,858	+				-0.3
3,497,858	+				+0.6
3,497,860	+				+0.0
3,497,879	+				+0.7
3,497,880	-				-1.2
3,497,891	+				+0.5
3,497,908	+				-0.1
3,497,908	+				-0.0
3,497,939	+				+0.3
3,498,048	-				-0.3
3,498,064	-				-2.3
3,498,086	+		DDA3937_RS15255	0.11	+0.4
3,498,087	-		DDA3937_RS15255	0.11	-1.3
3,498,208	+		DDA3937_RS15255	0.21	+0.2
3,498,209	-		DDA3937_RS15255	0.22	-1.4
3,498,209	-		DDA3937_RS15255	0.22	+0.8
3,498,246	+		DDA3937_RS15255	0.25	-0.0
3,498,410	+		DDA3937_RS15255	0.39	-1.6
3,498,412	+				-2.1
3,498,412	+		DDA3937_RS15255	0.39	-0.9
3,498,413	-		DDA3937_RS15255	0.39	-3.0
3,498,449	+		DDA3937_RS15255	0.42	-0.4
3,498,449	+		DDA3937_RS15255	0.42	-0.9
3,498,449	+				-0.3
3,498,449	+		DDA3937_RS15255	0.42	+0.2
3,498,450	-		DDA3937_RS15255	0.42	-2.1
3,498,450	-		DDA3937_RS15255	0.42	-2.5
3,498,450	-		DDA3937_RS15255	0.42	-1.6
3,498,504	-		DDA3937_RS15255	0.47	+1.0
3,498,504	-		DDA3937_RS15255	0.47	-0.3
3,498,504	-		DDA3937_RS15255	0.47	-1.4
3,498,528	-		DDA3937_RS15255	0.49	+0.7
3,498,671	+		DDA3937_RS15255	0.61	+0.4
3,498,672	-		DDA3937_RS15255	0.61	-0.9
3,498,800	+		DDA3937_RS15255	0.72	-0.9
3,498,801	-		DDA3937_RS15255	0.72	-2.1
3,498,809	+		DDA3937_RS15255	0.72	-0.3
3,498,810	-				-0.3
3,498,865	+		DDA3937_RS15255	0.77	-0.3
3,498,865	+		DDA3937_RS15255	0.77	-0.1
3,499,079	+				-1.0
3,499,133	+				+1.6
3,499,178	+				+0.4
3,499,217	+				+0.7
3,499,231	+				+0.4
3,499,231	+				+1.1
3,499,231	+				-0.4
3,499,231	+				-0.0
3,499,231	+				+0.7
3,499,232	-				+0.2
3,499,232	-				+0.7
3,499,232	-				+0.4
3,499,232	-				+0.5
3,499,232	-				-0.6
3,499,240	+				+0.0
3,499,241	-				-0.8
3,499,241	-				+0.4
3,499,241	-				+0.5
3,499,241	-				+0.2
3,499,278	+				-1.5
3,499,286	+				-0.0
3,499,286	+				+0.2
3,499,310	-				-0.1
3,499,343	+				+0.6
3,499,343	+				-0.6
3,499,344	-				-1.1
3,499,344	-				-0.5
3,499,344	-				-0.8
3,499,347	+				+0.1
3,499,347	+				+0.4
3,499,347	+				-0.1
3,499,347	+				-0.6
3,499,348	-				+0.5
3,499,348	-				+0.8
3,499,364	+				+0.9
3,499,380	-				+0.2
3,499,573	+		DDA3937_RS15260	0.18	-0.5
3,499,573	+		DDA3937_RS15260	0.18	+1.2
3,499,573	+		DDA3937_RS15260	0.18	-0.2
3,499,576	+		DDA3937_RS15260	0.18	-0.6
3,499,577	-		DDA3937_RS15260	0.18	-2.0
3,499,577	-		DDA3937_RS15260	0.18	-1.6
3,499,577	-		DDA3937_RS15260	0.18	-0.5
3,499,577	-		DDA3937_RS15260	0.18	+0.4
3,499,577	-		DDA3937_RS15260	0.18	-1.1
3,499,577	-		DDA3937_RS15260	0.18	-0.1
3,499,577	-		DDA3937_RS15260	0.18	+0.4
3,499,577	-		DDA3937_RS15260	0.18	-0.8
3,499,759	-		DDA3937_RS15260	0.33	+0.1
3,499,936	+		DDA3937_RS15260	0.47	-1.0
3,499,999	+		DDA3937_RS15260	0.52	-1.2
3,499,999	+		DDA3937_RS15260	0.52	-0.2
3,499,999	+		DDA3937_RS15260	0.52	-1.9
3,499,999	+		DDA3937_RS15260	0.52	-1.5
3,499,999	+		DDA3937_RS15260	0.52	+0.7
3,500,000	-		DDA3937_RS15260	0.52	-0.6
3,500,000	-		DDA3937_RS15260	0.52	-0.6
3,500,000	-		DDA3937_RS15260	0.52	+0.6
3,500,000	-		DDA3937_RS15260	0.52	+0.5
3,500,120	+		DDA3937_RS15260	0.62	-0.5