Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09945

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,246,973	-				-1.2
2,246,984	+				-0.9
2,246,985	-				-0.4
2,246,985	-				-1.9
2,246,985	-				+0.5
2,246,993	+				+0.5
2,246,994	-				-0.1
2,247,109	+		DDA3937_RS09940	0.13	+1.0
2,247,109	+		DDA3937_RS09940	0.13	-0.4
2,247,109	+		DDA3937_RS09940	0.13	+0.9
2,247,110	-		DDA3937_RS09940	0.13	-0.2
2,247,163	-		DDA3937_RS09940	0.21	-0.5
2,247,285	+		DDA3937_RS09940	0.37	-1.4
2,247,286	-		DDA3937_RS09940	0.37	+0.4
2,247,340	+		DDA3937_RS09940	0.44	+0.5
2,247,437	+		DDA3937_RS09940	0.57	-0.6
2,247,438	-		DDA3937_RS09940	0.57	-0.6
2,247,504	+		DDA3937_RS09940	0.66	-1.5
2,247,505	-		DDA3937_RS09940	0.66	-0.4
2,247,572	+		DDA3937_RS09940	0.75	+0.8
2,247,572	+		DDA3937_RS09940	0.75	-1.0
2,247,572	+		DDA3937_RS09940	0.75	+1.3
2,247,572	+		DDA3937_RS09940	0.75	-2.2
2,247,572	+		DDA3937_RS09940	0.75	+0.1
2,247,572	+		DDA3937_RS09940	0.75	+1.8
2,247,572	+		DDA3937_RS09940	0.75	-0.9
2,247,573	-		DDA3937_RS09940	0.75	+0.4
2,247,573	-		DDA3937_RS09940	0.75	+1.4
2,247,573	-		DDA3937_RS09940	0.75	+0.4
2,247,573	-		DDA3937_RS09940	0.75	+0.4
2,247,573	-		DDA3937_RS09940	0.75	+0.5
2,247,573	-		DDA3937_RS09940	0.75	-0.8
2,247,573	-		DDA3937_RS09940	0.75	-0.0
2,247,573	-		DDA3937_RS09940	0.75	-0.9
2,247,574	+		DDA3937_RS09940	0.75	+0.2
2,247,575	-		DDA3937_RS09940	0.75	+0.4
2,247,631	+		DDA3937_RS09940	0.82	-0.0
2,247,687	+		DDA3937_RS09940	0.90	-1.2
2,247,687	+		DDA3937_RS09940	0.90	-0.6
2,247,688	-				-0.0
2,247,688	-				-0.5
2,247,718	+				+0.1
2,247,744	+				+0.7
2,247,751	+				+0.5
2,247,773	+				+1.2
2,247,774	-				-0.9
2,247,777	+				+0.4
2,247,778	-				+0.1
2,247,778	-				+0.4
2,247,789	+				+0.3
2,247,790	-				-0.8
2,247,790	-				-0.2
2,247,790	-				-1.0
2,247,790	-				-0.1
2,247,854	+				-0.1
2,247,854	+				-1.5
2,247,865	+				+0.1
2,248,020	+		DDA3937_RS09945	0.14	-0.2
2,248,047	-		DDA3937_RS09945	0.17	-1.0
2,248,171	+		DDA3937_RS09945	0.30	-2.6
2,248,258	+		DDA3937_RS09945	0.40	-0.0
2,248,300	+		DDA3937_RS09945	0.44	-0.4
2,248,301	-		DDA3937_RS09945	0.44	-1.2
2,248,320	+		DDA3937_RS09945	0.46	+0.6
2,248,532	-		DDA3937_RS09945	0.69	-1.0
2,248,578	-		DDA3937_RS09945	0.74	-1.1
2,248,759	+				-0.1
2,248,760	-				-1.2
2,248,762	-				+0.2
2,248,871	+				+0.7
2,248,871	+				-0.7
2,248,871	+				+0.3
2,248,871	+				-2.2
2,248,872	-				+0.7
2,248,872	-				+0.3
2,248,872	-				+0.4
2,248,872	-				-0.4
2,249,059	-		DDA3937_RS09950	0.15	-0.6
2,249,096	+		DDA3937_RS09950	0.19	-0.4
2,249,096	+		DDA3937_RS09950	0.19	-1.2
2,249,097	-		DDA3937_RS09950	0.19	-0.1
2,249,097	-		DDA3937_RS09950	0.19	+0.4
2,249,141	+		DDA3937_RS09950	0.24	-0.2
2,249,141	+		DDA3937_RS09950	0.24	-0.4
2,249,141	+		DDA3937_RS09950	0.24	-1.0
2,249,141	+		DDA3937_RS09950	0.24	+0.3
2,249,141	+		DDA3937_RS09950	0.24	-0.5
2,249,141	+		DDA3937_RS09950	0.24	+0.2
2,249,142	-		DDA3937_RS09950	0.24	+0.3
2,249,142	-		DDA3937_RS09950	0.24	+0.6
2,249,142	-		DDA3937_RS09950	0.24	+1.7
2,249,142	-		DDA3937_RS09950	0.24	-0.3
2,249,142	-		DDA3937_RS09950	0.24	-0.3
2,249,142	-		DDA3937_RS09950	0.24	-1.0
2,249,144	+		DDA3937_RS09950	0.24	+0.0
2,249,144	+		DDA3937_RS09950	0.24	-0.4
2,249,145	-		DDA3937_RS09950	0.24	-1.0
2,249,256	+		DDA3937_RS09950	0.36	+0.0
2,249,256	+		DDA3937_RS09950	0.36	-0.9
2,249,256	+		DDA3937_RS09950	0.36	+0.1
2,249,256	+		DDA3937_RS09950	0.36	-1.2
2,249,256	+		DDA3937_RS09950	0.36	+1.1
2,249,256	+		DDA3937_RS09950	0.36	+0.9
2,249,257	-		DDA3937_RS09950	0.36	-1.0
2,249,257	-		DDA3937_RS09950	0.36	-0.8
2,249,257	-		DDA3937_RS09950	0.36	-0.4
2,249,257	-		DDA3937_RS09950	0.36	+0.2
2,249,257	-		DDA3937_RS09950	0.36	-0.5
2,249,258	+		DDA3937_RS09950	0.36	+0.1
2,249,258	+		DDA3937_RS09950	0.36	+0.4
2,249,259	-				-0.1
2,249,259	-		DDA3937_RS09950	0.36	-0.5
2,249,259	-		DDA3937_RS09950	0.36	+0.0
2,249,259	-		DDA3937_RS09950	0.36	-0.2
2,249,428	+		DDA3937_RS09950	0.55	+1.7
2,249,428	+		DDA3937_RS09950	0.55	+0.1
2,249,429	-		DDA3937_RS09950	0.55	+0.6
2,249,436	+		DDA3937_RS09950	0.55	+0.6
2,249,437	-		DDA3937_RS09950	0.56	-0.9
2,249,444	-		DDA3937_RS09950	0.56	+0.6
2,249,444	-		DDA3937_RS09950	0.56	+0.8
2,249,453	+		DDA3937_RS09950	0.57	-1.2
2,249,453	+		DDA3937_RS09950	0.57	-0.3
2,249,453	+		DDA3937_RS09950	0.57	-0.2
2,249,466	+		DDA3937_RS09950	0.59	-2.0
2,249,467	-		DDA3937_RS09950	0.59	-1.2
2,249,467	-				-1.7
2,249,467	-		DDA3937_RS09950	0.59	-0.1
2,249,467	-		DDA3937_RS09950	0.59	-0.1
2,249,673	+		DDA3937_RS09950	0.81	-0.5
2,249,673	+		DDA3937_RS09950	0.81	+0.1
2,249,674	-		DDA3937_RS09950	0.81	-0.4
2,249,707	-		DDA3937_RS09950	0.85	-0.8
2,249,774	+				-0.4
2,249,775	-				+0.6