Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04195

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04190 and DDA3937_RS04195 are separated by 156 nucleotidesDDA3937_RS04195 and DDA3937_RS04200 are separated by 54 nucleotides DDA3937_RS04190: DDA3937_RS04190 - hypothetical protein, at 927,591 to 929,366 _RS04190 DDA3937_RS04195: DDA3937_RS04195 - GPO family capsid scaffolding protein, at 929,523 to 930,359 _RS04195 DDA3937_RS04200: DDA3937_RS04200 - phage major capsid protein, P2 family, at 930,414 to 931,445 _RS04200 Position (kb) 929 930 931Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 928.569 kb on - strand, within DDA3937_RS04190at 928.597 kb on + strand, within DDA3937_RS04190at 928.610 kb on - strand, within DDA3937_RS04190at 928.624 kb on + strand, within DDA3937_RS04190at 928.624 kb on + strand, within DDA3937_RS04190at 928.624 kb on + strand, within DDA3937_RS04190at 928.625 kb on - strand, within DDA3937_RS04190at 928.625 kb on - strand, within DDA3937_RS04190at 928.643 kb on + strand, within DDA3937_RS04190at 928.741 kb on + strand, within DDA3937_RS04190at 928.741 kb on + strand, within DDA3937_RS04190at 928.741 kb on + strand, within DDA3937_RS04190at 928.741 kb on + strand, within DDA3937_RS04190at 928.742 kb on - strand, within DDA3937_RS04190at 928.742 kb on - strand, within DDA3937_RS04190at 928.837 kb on + strand, within DDA3937_RS04190at 928.837 kb on + strand, within DDA3937_RS04190at 928.871 kb on + strand, within DDA3937_RS04190at 928.874 kb on + strandat 928.874 kb on + strand, within DDA3937_RS04190at 928.874 kb on + strand, within DDA3937_RS04190at 928.874 kb on + strand, within DDA3937_RS04190at 928.875 kb on - strand, within DDA3937_RS04190at 928.875 kb on - strand, within DDA3937_RS04190at 929.025 kb on - strand, within DDA3937_RS04190at 929.025 kb on - strand, within DDA3937_RS04190at 929.025 kb on - strand, within DDA3937_RS04190at 929.025 kb on - strand, within DDA3937_RS04190at 929.027 kb on + strand, within DDA3937_RS04190at 929.027 kb on + strand, within DDA3937_RS04190at 929.027 kb on + strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.081 kb on + strand, within DDA3937_RS04190at 929.205 kb on - strandat 929.252 kb on - strandat 929.254 kb on + strandat 929.255 kb on - strandat 929.410 kb on - strandat 929.410 kb on - strandat 929.580 kb on - strandat 929.626 kb on - strand, within DDA3937_RS04195at 929.704 kb on + strand, within DDA3937_RS04195at 929.752 kb on + strand, within DDA3937_RS04195at 929.753 kb on - strand, within DDA3937_RS04195at 929.770 kb on + strand, within DDA3937_RS04195at 929.770 kb on + strand, within DDA3937_RS04195at 929.771 kb on - strand, within DDA3937_RS04195at 929.771 kb on - strand, within DDA3937_RS04195at 929.771 kb on - strand, within DDA3937_RS04195at 929.774 kb on - strand, within DDA3937_RS04195at 929.818 kb on + strand, within DDA3937_RS04195at 929.856 kb on + strand, within DDA3937_RS04195at 929.942 kb on - strand, within DDA3937_RS04195at 929.954 kb on - strand, within DDA3937_RS04195at 929.996 kb on + strand, within DDA3937_RS04195at 929.996 kb on + strand, within DDA3937_RS04195at 929.996 kb on + strand, within DDA3937_RS04195at 929.997 kb on - strand, within DDA3937_RS04195at 929.997 kb on - strand, within DDA3937_RS04195at 930.009 kb on - strand, within DDA3937_RS04195at 930.071 kb on + strand, within DDA3937_RS04195at 930.071 kb on + strand, within DDA3937_RS04195at 930.071 kb on + strand, within DDA3937_RS04195at 930.211 kb on + strand, within DDA3937_RS04195at 930.212 kb on - strand, within DDA3937_RS04195at 930.300 kb on - strandat 930.300 kb on - strandat 930.303 kb on - strandat 930.333 kb on - strandat 930.368 kb on - strandat 930.378 kb on - strandat 930.413 kb on + strandat 930.422 kb on - strandat 930.453 kb on + strandat 930.453 kb on + strandat 930.478 kb on - strandat 930.502 kb on - strandat 930.668 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.700 kb on - strand, within DDA3937_RS04200at 930.700 kb on - strand, within DDA3937_RS04200at 930.700 kb on - strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.797 kb on - strand, within DDA3937_RS04200at 930.831 kb on - strand, within DDA3937_RS04200at 931.053 kb on + strand, within DDA3937_RS04200at 931.256 kb on + strand, within DDA3937_RS04200at 931.256 kb on + strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.260 kb on + strand, within DDA3937_RS04200at 931.260 kb on + strand, within DDA3937_RS04200at 931.260 kb on + strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.329 kb on + strand, within DDA3937_RS04200at 931.329 kb on + strand, within DDA3937_RS04200at 931.330 kb on - strandat 931.347 kb on + strandat 931.359 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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928,569 - DDA3937_RS04190 0.55 -0.4
928,597 + DDA3937_RS04190 0.57 -0.6
928,610 - DDA3937_RS04190 0.57 +0.4
928,624 + DDA3937_RS04190 0.58 +0.6
928,624 + DDA3937_RS04190 0.58 +0.2
928,624 + DDA3937_RS04190 0.58 -0.3
928,625 - DDA3937_RS04190 0.58 +0.3
928,625 - DDA3937_RS04190 0.58 -0.1
928,643 + DDA3937_RS04190 0.59 -0.3
928,741 + DDA3937_RS04190 0.65 -0.2
928,741 + DDA3937_RS04190 0.65 +1.0
928,741 + DDA3937_RS04190 0.65 +0.6
928,741 + DDA3937_RS04190 0.65 +0.1
928,742 - DDA3937_RS04190 0.65 +0.7
928,742 - DDA3937_RS04190 0.65 -0.2
928,837 + DDA3937_RS04190 0.70 -0.4
928,837 + DDA3937_RS04190 0.70 +0.8
928,871 + DDA3937_RS04190 0.72 -0.7
928,874 + -0.8
928,874 + DDA3937_RS04190 0.72 -0.5
928,874 + DDA3937_RS04190 0.72 +0.1
928,874 + DDA3937_RS04190 0.72 +0.6
928,875 - DDA3937_RS04190 0.72 +0.2
928,875 - DDA3937_RS04190 0.72 -1.4
929,025 - DDA3937_RS04190 0.81 +1.6
929,025 - DDA3937_RS04190 0.81 -0.2
929,025 - DDA3937_RS04190 0.81 -0.6
929,025 - DDA3937_RS04190 0.81 -0.3
929,027 + DDA3937_RS04190 0.81 -0.1
929,027 + DDA3937_RS04190 0.81 -0.3
929,027 + DDA3937_RS04190 0.81 -0.3
929,028 - DDA3937_RS04190 0.81 +0.0
929,028 - DDA3937_RS04190 0.81 -0.6
929,028 - DDA3937_RS04190 0.81 +0.3
929,028 - DDA3937_RS04190 0.81 +0.1
929,028 - DDA3937_RS04190 0.81 -1.1
929,028 - DDA3937_RS04190 0.81 -0.6
929,081 + DDA3937_RS04190 0.84 +0.7
929,205 - +0.5
929,252 - +0.2
929,254 + -0.4
929,255 - -0.8
929,410 - +0.1
929,410 - -1.2
929,580 - -0.6
929,626 - DDA3937_RS04195 0.12 -1.2
929,704 + DDA3937_RS04195 0.22 -0.3
929,752 + DDA3937_RS04195 0.27 -1.2
929,753 - DDA3937_RS04195 0.27 +0.2
929,770 + DDA3937_RS04195 0.30 -1.8
929,770 + DDA3937_RS04195 0.30 -1.3
929,771 - DDA3937_RS04195 0.30 -0.1
929,771 - DDA3937_RS04195 0.30 -0.3
929,771 - DDA3937_RS04195 0.30 +0.1
929,774 - DDA3937_RS04195 0.30 -1.4
929,818 + DDA3937_RS04195 0.35 -1.3
929,856 + DDA3937_RS04195 0.40 -1.0
929,942 - DDA3937_RS04195 0.50 +0.3
929,954 - DDA3937_RS04195 0.51 +0.1
929,996 + DDA3937_RS04195 0.57 -2.2
929,996 + DDA3937_RS04195 0.57 -1.8
929,996 + DDA3937_RS04195 0.57 -1.8
929,997 - DDA3937_RS04195 0.57 -0.6
929,997 - DDA3937_RS04195 0.57 +0.2
930,009 - DDA3937_RS04195 0.58 +0.1
930,071 + DDA3937_RS04195 0.65 -0.2
930,071 + DDA3937_RS04195 0.65 -0.5
930,071 + DDA3937_RS04195 0.65 -1.2
930,211 + DDA3937_RS04195 0.82 +0.5
930,212 - DDA3937_RS04195 0.82 -0.1
930,300 - +0.4
930,300 - +0.5
930,303 - +0.5
930,333 - +0.1
930,368 - +0.3
930,378 - -0.5
930,413 + +0.2
930,422 - +0.3
930,453 + -0.8
930,453 + +0.5
930,478 - +0.5
930,502 - +0.8
930,668 + DDA3937_RS04200 0.25 -0.4
930,699 + DDA3937_RS04200 0.28 -0.8
930,699 + DDA3937_RS04200 0.28 +0.2
930,699 + DDA3937_RS04200 0.28 -1.6
930,699 + DDA3937_RS04200 0.28 -0.2
930,699 + DDA3937_RS04200 0.28 +0.5
930,700 - DDA3937_RS04200 0.28 -0.2
930,700 - DDA3937_RS04200 0.28 -0.2
930,700 - DDA3937_RS04200 0.28 +1.2
930,701 + DDA3937_RS04200 0.28 -1.0
930,701 + DDA3937_RS04200 0.28 +0.3
930,701 + DDA3937_RS04200 0.28 -0.1
930,701 + DDA3937_RS04200 0.28 -0.2
930,702 - DDA3937_RS04200 0.28 -0.2
930,702 - DDA3937_RS04200 0.28 -1.0
930,702 - DDA3937_RS04200 0.28 -0.6
930,702 - DDA3937_RS04200 0.28 -1.0
930,797 - DDA3937_RS04200 0.37 +1.2
930,831 - DDA3937_RS04200 0.40 +0.7
931,053 + DDA3937_RS04200 0.62 -0.0
931,256 + DDA3937_RS04200 0.82 -0.5
931,256 + DDA3937_RS04200 0.82 +0.8
931,257 - DDA3937_RS04200 0.82 +2.4
931,257 - DDA3937_RS04200 0.82 +0.1
931,257 - DDA3937_RS04200 0.82 +0.0
931,257 - DDA3937_RS04200 0.82 -0.4
931,257 - DDA3937_RS04200 0.82 -0.9
931,257 - DDA3937_RS04200 0.82 -2.2
931,257 - DDA3937_RS04200 0.82 -0.7
931,257 - DDA3937_RS04200 0.82 +0.2
931,257 - DDA3937_RS04200 0.82 -2.0
931,257 - DDA3937_RS04200 0.82 -1.1
931,257 - DDA3937_RS04200 0.82 -0.2
931,257 - DDA3937_RS04200 0.82 -0.5
931,260 + DDA3937_RS04200 0.82 -2.0
931,260 + DDA3937_RS04200 0.82 -3.0
931,260 + DDA3937_RS04200 0.82 +0.3
931,261 - DDA3937_RS04200 0.82 -0.6
931,261 - DDA3937_RS04200 0.82 +0.0
931,261 - DDA3937_RS04200 0.82 +0.4
931,261 - DDA3937_RS04200 0.82 -0.2
931,261 - DDA3937_RS04200 0.82 +0.7
931,261 - DDA3937_RS04200 0.82 +0.0
931,261 - DDA3937_RS04200 0.82 -1.4
931,329 + DDA3937_RS04200 0.89 -0.6
931,329 + DDA3937_RS04200 0.89 -0.6
931,330 - +0.0
931,347 + -0.4
931,359 + +0.2

Or see this region's nucleotide sequence