Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00970 and DDA3937_RS00975 are separated by 83 nucleotides DDA3937_RS00975 and DDA3937_RS00980 are separated by 206 nucleotides DDA3937_RS00980 and DDA3937_RS00985 are separated by 14 nucleotides
DDA3937_RS00970: DDA3937_RS00970 - DNA-binding transcriptional regulator OxyR, at 223,626 to 224,543
_RS00970
DDA3937_RS00975: DDA3937_RS00975 - Si-specific NAD(P)(+) transhydrogenase, at 224,627 to 226,027
_RS00975
DDA3937_RS00980: DDA3937_RS00980 - HTH-type transcriptional repressor FabR, at 226,234 to 226,872
_RS00980
DDA3937_RS00985: DDA3937_RS00985 - YijD family membrane protein, at 226,887 to 227,261
_RS00985
Position (kb) 224
225
226
227 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 223.631 kb on + strand at 223.631 kb on + strand at 223.642 kb on + strand at 223.642 kb on + strand at 223.643 kb on - strand at 223.643 kb on - strand at 223.643 kb on - strand at 223.992 kb on + strand, within DDA3937_RS00970 at 223.992 kb on + strand at 223.993 kb on - strand, within DDA3937_RS00970 at 224.333 kb on + strand, within DDA3937_RS00970 at 224.337 kb on - strand, within DDA3937_RS00970 at 224.392 kb on - strand, within DDA3937_RS00970 at 224.392 kb on - strand, within DDA3937_RS00970 at 224.404 kb on - strand, within DDA3937_RS00970 at 224.439 kb on + strand, within DDA3937_RS00970 at 224.440 kb on - strand, within DDA3937_RS00970 at 224.440 kb on - strand, within DDA3937_RS00970 at 224.470 kb on - strand at 224.470 kb on - strand at 224.542 kb on - strand at 224.576 kb on - strand at 224.578 kb on + strand at 224.579 kb on - strand at 224.579 kb on - strand at 224.911 kb on - strand, within DDA3937_RS00975 at 224.977 kb on - strand, within DDA3937_RS00975 at 225.538 kb on - strand, within DDA3937_RS00975 at 225.659 kb on - strand, within DDA3937_RS00975 at 225.910 kb on + strand at 225.924 kb on - strand at 226.015 kb on - strand at 226.053 kb on + strand at 226.054 kb on - strand at 226.077 kb on - strand at 226.093 kb on + strand at 226.117 kb on + strand at 226.117 kb on + strand at 226.142 kb on - strand at 226.142 kb on - strand at 226.144 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.168 kb on + strand at 226.168 kb on + strand at 226.168 kb on + strand at 226.169 kb on - strand at 226.176 kb on - strand at 226.185 kb on + strand at 226.186 kb on - strand at 226.186 kb on - strand at 226.186 kb on - strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.204 kb on + strand at 226.204 kb on + strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.232 kb on + strand at 226.301 kb on + strand, within DDA3937_RS00980 at 226.301 kb on + strand, within DDA3937_RS00980 at 226.302 kb on - strand, within DDA3937_RS00980 at 226.302 kb on - strand, within DDA3937_RS00980 at 226.368 kb on + strand, within DDA3937_RS00980 at 226.379 kb on - strand, within DDA3937_RS00980 at 226.473 kb on + strand, within DDA3937_RS00980 at 226.473 kb on + strand, within DDA3937_RS00980 at 226.539 kb on + strand, within DDA3937_RS00980 at 226.539 kb on + strand, within DDA3937_RS00980 at 226.608 kb on - strand, within DDA3937_RS00980 at 226.629 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.669 kb on - strand, within DDA3937_RS00980 at 226.718 kb on + strand, within DDA3937_RS00980 at 226.719 kb on - strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.819 kb on + strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.823 kb on - strand at 226.823 kb on - strand at 226.871 kb on - strand at 226.900 kb on + strand at 226.901 kb on - strand at 226.982 kb on + strand, within DDA3937_RS00985 at 226.982 kb on + strand, within DDA3937_RS00985 at 226.983 kb on - strand, within DDA3937_RS00985 at 226.983 kb on - strand, within DDA3937_RS00985 at 227.017 kb on + strand, within DDA3937_RS00985
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 223,631 + +1.5 223,631 + +0.2 223,642 + +0.4 223,642 + -1.9 223,643 - -1.6 223,643 - -0.0 223,643 - +0.7 223,992 + DDA3937_RS00970 0.40 -1.2 223,992 + -1.2 223,993 - DDA3937_RS00970 0.40 -0.7 224,333 + DDA3937_RS00970 0.77 +0.1 224,337 - DDA3937_RS00970 0.77 -0.5 224,392 - DDA3937_RS00970 0.83 +1.2 224,392 - DDA3937_RS00970 0.83 -0.2 224,404 - DDA3937_RS00970 0.85 -0.5 224,439 + DDA3937_RS00970 0.89 -0.5 224,440 - DDA3937_RS00970 0.89 -1.2 224,440 - DDA3937_RS00970 0.89 -1.5 224,470 - -1.0 224,470 - +1.1 224,542 - -0.5 224,576 - -0.3 224,578 + -0.6 224,579 - -1.3 224,579 - +1.7 224,911 - DDA3937_RS00975 0.20 -0.6 224,977 - DDA3937_RS00975 0.25 -2.2 225,538 - DDA3937_RS00975 0.65 +0.1 225,659 - DDA3937_RS00975 0.74 +0.5 225,910 + +0.1 225,924 - +1.1 226,015 - +0.7 226,053 + -0.6 226,054 - +0.1 226,077 - -2.3 226,093 + -1.8 226,117 + +0.4 226,117 + +0.6 226,142 - +0.2 226,142 - -1.2 226,144 + +0.7 226,164 + -1.9 226,164 + +0.6 226,164 + -1.2 226,164 + +0.4 226,164 + -0.7 226,164 + +0.1 226,164 + +1.1 226,164 + -0.1 226,164 + +1.3 226,164 + +0.4 226,165 - -0.5 226,165 - -0.1 226,165 - -0.7 226,165 - +0.5 226,165 - -2.2 226,165 - +0.5 226,165 - -1.2 226,165 - +1.8 226,168 + -0.1 226,168 + -0.4 226,168 + -0.1 226,169 - -0.5 226,176 - -0.2 226,185 + +1.1 226,186 - -1.6 226,186 - -0.9 226,186 - +0.5 226,187 + +0.5 226,187 + -1.0 226,187 + -0.1 226,187 + +0.2 226,187 + +0.6 226,188 - -0.9 226,188 - -0.9 226,188 - -2.2 226,188 - -1.3 226,188 - -1.3 226,188 - -1.1 226,188 - +0.4 226,188 - -1.6 226,188 - +0.4 226,188 - -0.8 226,188 - -4.0 226,188 - -1.1 226,204 + +0.4 226,204 + -0.2 226,205 - -0.8 226,205 - +0.1 226,205 - -0.9 226,205 - -1.6 226,205 - -1.2 226,205 - -0.9 226,232 + -2.7 226,301 + DDA3937_RS00980 0.10 -1.8 226,301 + DDA3937_RS00980 0.10 -1.7 226,302 - DDA3937_RS00980 0.11 -1.4 226,302 - DDA3937_RS00980 0.11 -1.8 226,368 + DDA3937_RS00980 0.21 -2.8 226,379 - DDA3937_RS00980 0.23 -1.6 226,473 + DDA3937_RS00980 0.37 -3.1 226,473 + DDA3937_RS00980 0.37 -0.7 226,539 + DDA3937_RS00980 0.48 -1.9 226,539 + DDA3937_RS00980 0.48 -1.0 226,608 - DDA3937_RS00980 0.59 -1.9 226,629 + DDA3937_RS00980 0.62 -1.9 226,648 + DDA3937_RS00980 0.65 -2.0 226,648 + DDA3937_RS00980 0.65 +1.1 226,648 + DDA3937_RS00980 0.65 -1.9 226,648 + DDA3937_RS00980 0.65 -0.3 226,649 - DDA3937_RS00980 0.65 -2.5 226,649 - DDA3937_RS00980 0.65 -1.6 226,649 - DDA3937_RS00980 0.65 -1.7 226,669 - DDA3937_RS00980 0.68 -1.2 226,718 + DDA3937_RS00980 0.76 -1.6 226,719 - DDA3937_RS00980 0.76 -1.9 226,800 + DDA3937_RS00980 0.89 -1.7 226,800 + DDA3937_RS00980 0.89 -1.5 226,800 + DDA3937_RS00980 0.89 -0.8 226,800 + DDA3937_RS00980 0.89 -1.7 226,801 - DDA3937_RS00980 0.89 -1.7 226,801 - DDA3937_RS00980 0.89 -0.4 226,801 - DDA3937_RS00980 0.89 -2.7 226,801 - DDA3937_RS00980 0.89 -1.3 226,801 - DDA3937_RS00980 0.89 -0.7 226,801 - DDA3937_RS00980 0.89 -0.1 226,819 + -0.8 226,820 - -1.2 226,820 - -0.2 226,820 - +1.1 226,820 - -1.7 226,820 - -1.8 226,820 - -0.4 226,822 + -1.5 226,822 + -1.2 226,822 + -1.2 226,822 + +0.3 226,823 - -0.6 226,823 - +0.9 226,871 - +0.1 226,900 + -0.7 226,901 - -0.2 226,982 + DDA3937_RS00985 0.25 +1.3 226,982 + DDA3937_RS00985 0.25 +0.0 226,983 - DDA3937_RS00985 0.26 -1.1 226,983 - DDA3937_RS00985 0.26 -0.3 227,017 + DDA3937_RS00985 0.35 +0.1
Or see this region's nucleotide sequence