Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03010 and DDA3937_RS03015 are separated by 265 nucleotides DDA3937_RS03015 and DDA3937_RS03020 are separated by 125 nucleotides DDA3937_RS03020 and DDA3937_RS03025 are separated by 158 nucleotides DDA3937_RS03025 and DDA3937_RS03030 are separated by 47 nucleotides
DDA3937_RS03010: DDA3937_RS03010 - serine-type D-Ala-D-Ala carboxypeptidase, at 664,929 to 666,362
_RS03010
DDA3937_RS03015: DDA3937_RS03015 - transcription elongation factor GreA, at 666,628 to 667,104
_RS03015
DDA3937_RS03020: DDA3937_RS03020 - ribosome assembly RNA-binding protein YhbY, at 667,230 to 667,523
_RS03020
DDA3937_RS03025: DDA3937_RS03025 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 667,682 to 668,311
_RS03025
DDA3937_RS03030: DDA3937_RS03030 - ATP-dependent zinc metalloprotease FtsH, at 668,359 to 670,311
_RS03030
Position (kb) 667
668 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 666.277 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.277 kb on + strand at 666.278 kb on - strand at 666.278 kb on - strand at 666.278 kb on - strand at 666.286 kb on + strand at 666.286 kb on + strand at 666.286 kb on + strand at 666.286 kb on + strand at 666.287 kb on - strand at 666.287 kb on - strand at 666.287 kb on - strand at 666.324 kb on + strand at 666.324 kb on + strand at 666.325 kb on - strand at 666.325 kb on - strand at 666.325 kb on - strand at 666.325 kb on - strand at 666.325 kb on - strand at 666.329 kb on - strand at 666.372 kb on + strand at 666.372 kb on + strand at 666.373 kb on - strand at 666.373 kb on - strand at 666.376 kb on + strand at 666.376 kb on + strand at 666.376 kb on + strand at 666.377 kb on - strand at 666.377 kb on - strand at 666.377 kb on - strand at 666.397 kb on + strand at 666.397 kb on + strand at 666.398 kb on - strand at 666.398 kb on - strand at 666.400 kb on + strand at 666.400 kb on + strand at 666.401 kb on - strand at 666.423 kb on - strand at 666.451 kb on + strand at 666.452 kb on - strand at 666.511 kb on + strand at 666.521 kb on + strand at 666.569 kb on + strand at 666.611 kb on + strand at 666.617 kb on + strand at 666.617 kb on + strand at 666.627 kb on + strand at 666.715 kb on - strand, within DDA3937_RS03015 at 666.941 kb on - strand at 667.096 kb on + strand at 667.097 kb on - strand at 667.110 kb on - strand at 667.270 kb on + strand, within DDA3937_RS03020 at 667.270 kb on + strand, within DDA3937_RS03020 at 667.270 kb on + strand, within DDA3937_RS03020 at 667.270 kb on + strand, within DDA3937_RS03020 at 667.511 kb on + strand at 667.564 kb on + strand at 667.598 kb on + strand at 667.598 kb on + strand at 667.642 kb on + strand at 667.642 kb on + strand at 667.642 kb on + strand at 667.642 kb on + strand at 667.642 kb on + strand at 667.642 kb on + strand at 667.642 kb on + strand at 667.642 kb on + strand at 667.646 kb on + strand at 667.646 kb on + strand at 667.646 kb on + strand at 667.646 kb on + strand at 667.646 kb on + strand at 667.646 kb on + strand at 667.652 kb on + strand at 667.668 kb on + strand at 667.668 kb on + strand at 667.883 kb on + strand, within DDA3937_RS03025 at 668.105 kb on + strand, within DDA3937_RS03025 at 668.128 kb on + strand, within DDA3937_RS03025 at 668.282 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 666,277 + -0.2 666,277 + +0.1 666,277 + +0.1 666,277 + -0.7 666,277 + +0.4 666,277 + +0.8 666,277 + -1.5 666,278 - +0.0 666,278 - -0.1 666,278 - +0.5 666,286 + +0.5 666,286 + -0.3 666,286 + -0.5 666,286 + -0.3 666,287 - -0.3 666,287 - -2.0 666,287 - +0.1 666,324 + +0.8 666,324 + -0.1 666,325 - +0.9 666,325 - -0.1 666,325 - -0.9 666,325 - +0.2 666,325 - -0.3 666,329 - -0.2 666,372 + -0.2 666,372 + -0.2 666,373 - -0.3 666,373 - -0.7 666,376 + +0.4 666,376 + +0.6 666,376 + +0.3 666,377 - +0.6 666,377 - -0.4 666,377 - +0.1 666,397 + -0.7 666,397 + +0.0 666,398 - +0.4 666,398 - -0.4 666,400 + +0.8 666,400 + +2.2 666,401 - +0.5 666,423 - +0.1 666,451 + +0.2 666,452 - +0.6 666,511 + +0.1 666,521 + +1.5 666,569 + -0.5 666,611 + -1.9 666,617 + -1.1 666,617 + -1.7 666,627 + +1.5 666,715 - DDA3937_RS03015 0.18 -1.3 666,941 - -2.3 667,096 + +0.4 667,097 - +0.6 667,110 - +0.3 667,270 + DDA3937_RS03020 0.14 +1.2 667,270 + DDA3937_RS03020 0.14 +0.3 667,270 + DDA3937_RS03020 0.14 -0.1 667,270 + DDA3937_RS03020 0.14 +0.2 667,511 + -0.3 667,564 + +0.5 667,598 + +0.3 667,598 + +0.2 667,642 + -0.5 667,642 + +0.1 667,642 + +0.2 667,642 + +0.3 667,642 + -0.9 667,642 + +0.9 667,642 + +0.9 667,642 + +0.1 667,646 + +0.6 667,646 + +0.0 667,646 + -0.1 667,646 + +0.9 667,646 + -0.0 667,646 + +0.1 667,652 + +0.2 667,668 + -0.7 667,668 + +0.8 667,883 + DDA3937_RS03025 0.32 +2.9 668,105 + DDA3937_RS03025 0.67 +0.3 668,128 + DDA3937_RS03025 0.71 -1.7 668,282 + +1.2
Or see this region's nucleotide sequence