Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15485

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,419,088	+				+0.2
3,419,088	+				+0.2
3,419,088	+				-0.8
3,419,088	+				+1.4
3,419,089	-				-0.9
3,419,089	-				+0.1
3,419,089	-				+0.1
3,419,089	-				-1.6
3,419,089	-				-0.6
3,419,089	-				-1.2
3,419,154	+		LRK54_RS15480	0.12	-0.3
3,419,155	-		LRK54_RS15480	0.12	-0.6
3,419,155	-		LRK54_RS15480	0.12	-0.5
3,419,155	-		LRK54_RS15480	0.12	+0.9
3,419,155	-		LRK54_RS15480	0.12	-1.2
3,419,155	-		LRK54_RS15480	0.12	-2.9
3,419,190	+		LRK54_RS15480	0.19	+2.3
3,419,190	+		LRK54_RS15480	0.19	+0.8
3,419,190	+		LRK54_RS15480	0.19	-1.1
3,419,190	+		LRK54_RS15480	0.19	-0.9
3,419,190	+		LRK54_RS15480	0.19	+0.1
3,419,190	+		LRK54_RS15480	0.19	+0.7
3,419,190	+		LRK54_RS15480	0.19	+0.4
3,419,190	+		LRK54_RS15480	0.19	-1.6
3,419,190	+		LRK54_RS15480	0.19	+0.4
3,419,190	+		LRK54_RS15480	0.19	+1.5
3,419,190	+		LRK54_RS15480	0.19	+0.3
3,419,190	+		LRK54_RS15480	0.19	+3.8
3,419,190	+		LRK54_RS15480	0.19	-0.0
3,419,190	+		LRK54_RS15480	0.19	-0.1
3,419,190	+		LRK54_RS15480	0.19	-0.5
3,419,190	+		LRK54_RS15480	0.19	-0.4
3,419,190	+		LRK54_RS15480	0.19	-0.1
3,419,190	+		LRK54_RS15480	0.19	+0.0
3,419,190	+		LRK54_RS15480	0.19	+0.7
3,419,190	+		LRK54_RS15480	0.19	-0.1
3,419,190	+		LRK54_RS15480	0.19	-1.8
3,419,190	+		LRK54_RS15480	0.19	+0.3
3,419,190	+		LRK54_RS15480	0.19	+0.5
3,419,190	+		LRK54_RS15480	0.19	-1.6
3,419,190	+		LRK54_RS15480	0.19	-1.8
3,419,190	+		LRK54_RS15480	0.19	+0.0
3,419,190	+		LRK54_RS15480	0.19	-1.4
3,419,190	+		LRK54_RS15480	0.19	-0.6
3,419,190	+		LRK54_RS15480	0.19	-1.0
3,419,190	+		LRK54_RS15480	0.19	+0.1
3,419,191	-		LRK54_RS15480	0.19	-1.2
3,419,191	-		LRK54_RS15480	0.19	-1.8
3,419,191	-		LRK54_RS15480	0.19	-0.6
3,419,191	-		LRK54_RS15480	0.19	-1.9
3,419,191	-		LRK54_RS15480	0.19	-0.2
3,419,191	-		LRK54_RS15480	0.19	-0.7
3,419,191	-		LRK54_RS15480	0.19	+0.4
3,419,191	-		LRK54_RS15480	0.19	-3.7
3,419,191	-		LRK54_RS15480	0.19	-0.4
3,419,191	-		LRK54_RS15480	0.19	+0.7
3,419,191	-		LRK54_RS15480	0.19	+1.1
3,419,191	-		LRK54_RS15480	0.19	-0.3
3,419,191	-		LRK54_RS15480	0.19	-0.9
3,419,191	-		LRK54_RS15480	0.19	-1.4
3,419,191	-		LRK54_RS15480	0.19	+0.5
3,419,191	-		LRK54_RS15480	0.19	-0.8
3,419,191	-		LRK54_RS15480	0.19	-0.6
3,419,191	-		LRK54_RS15480	0.19	+1.0
3,419,191	-		LRK54_RS15480	0.19	-0.6
3,419,191	-		LRK54_RS15480	0.19	+1.6
3,419,191	-		LRK54_RS15480	0.19	-2.0
3,419,191	-		LRK54_RS15480	0.19	+0.4
3,419,191	-		LRK54_RS15480	0.19	-2.1
3,419,191	-		LRK54_RS15480	0.19	+0.6
3,419,191	-		LRK54_RS15480	0.19	-2.6
3,419,191	-		LRK54_RS15480	0.19	-2.0
3,419,191	-		LRK54_RS15480	0.19	-1.3
3,419,191	-		LRK54_RS15480	0.19	+0.3
3,419,191	-		LRK54_RS15480	0.19	-0.4
3,419,191	-		LRK54_RS15480	0.19	+0.3
3,419,238	+		LRK54_RS15480	0.28	+0.9
3,419,238	+		LRK54_RS15480	0.28	+0.1
3,419,238	+		LRK54_RS15480	0.28	-2.4
3,419,238	+		LRK54_RS15480	0.28	-1.2
3,419,238	+		LRK54_RS15480	0.28	-0.3
3,419,238	+		LRK54_RS15480	0.28	+0.5
3,419,238	+		LRK54_RS15480	0.28	+0.4
3,419,238	+		LRK54_RS15480	0.28	-2.0
3,419,238	+		LRK54_RS15480	0.28	-1.7
3,419,238	+		LRK54_RS15480	0.28	+0.8
3,419,238	+		LRK54_RS15480	0.28	-0.2
3,419,238	+		LRK54_RS15480	0.28	+1.3
3,419,238	+		LRK54_RS15480	0.28	-0.3
3,419,238	+		LRK54_RS15480	0.28	+0.5
3,419,238	+		LRK54_RS15480	0.28	-1.1
3,419,239	-		LRK54_RS15480	0.28	+0.2
3,419,239	-		LRK54_RS15480	0.28	+1.1
3,419,239	-		LRK54_RS15480	0.28	-0.3
3,419,239	-		LRK54_RS15480	0.28	-1.7
3,419,239	-		LRK54_RS15480	0.28	+0.6
3,419,239	-		LRK54_RS15480	0.28	-1.6
3,419,239	-		LRK54_RS15480	0.28	-3.3
3,419,239	-		LRK54_RS15480	0.28	-0.3
3,419,239	-		LRK54_RS15480	0.28	+0.6
3,419,239	-		LRK54_RS15480	0.28	+1.3
3,419,239	-		LRK54_RS15480	0.28	+0.7
3,419,239	-		LRK54_RS15480	0.28	+0.6
3,419,332	+		LRK54_RS15480	0.45	-1.3
3,419,333	-		LRK54_RS15480	0.45	-0.4
3,419,448	+		LRK54_RS15480	0.66	+1.8
3,419,448	+		LRK54_RS15480	0.66	-0.6
3,419,448	+		LRK54_RS15480	0.66	-0.3
3,419,448	+		LRK54_RS15480	0.66	+1.1
3,419,448	+		LRK54_RS15480	0.66	-1.6
3,419,448	+		LRK54_RS15480	0.66	+0.8
3,419,448	+		LRK54_RS15480	0.66	-0.6
3,419,448	+		LRK54_RS15480	0.66	-1.2
3,419,448	+		LRK54_RS15480	0.66	+0.1
3,419,448	+		LRK54_RS15480	0.66	-0.3
3,419,448	+		LRK54_RS15480	0.66	-0.2
3,419,448	+		LRK54_RS15480	0.66	-0.1
3,419,448	+		LRK54_RS15480	0.66	-2.5
3,419,448	+		LRK54_RS15480	0.66	+4.4
3,419,448	+		LRK54_RS15480	0.66	+1.3
3,419,448	+		LRK54_RS15480	0.66	-0.4
3,419,448	+		LRK54_RS15480	0.66	+0.7
3,419,448	+		LRK54_RS15480	0.66	-1.4
3,419,448	+		LRK54_RS15480	0.66	-0.2
3,419,449	-		LRK54_RS15480	0.66	-2.1
3,419,449	-		LRK54_RS15480	0.66	-0.1
3,419,449	-		LRK54_RS15480	0.66	-0.5
3,419,449	-		LRK54_RS15480	0.66	-0.2
3,419,449	-		LRK54_RS15480	0.66	+0.0
3,419,449	-		LRK54_RS15480	0.66	-2.1
3,419,449	-		LRK54_RS15480	0.66	-1.9
3,419,449	-		LRK54_RS15480	0.66	+1.8
3,419,449	-		LRK54_RS15480	0.66	+0.8
3,419,449	-		LRK54_RS15480	0.66	-0.1
3,419,449	-		LRK54_RS15480	0.66	-0.5
3,419,449	-		LRK54_RS15480	0.66	+0.1
3,419,449	-		LRK54_RS15480	0.66	-0.2
3,419,449	-		LRK54_RS15480	0.66	-0.2
3,419,449	-		LRK54_RS15480	0.66	+0.8
3,419,449	-		LRK54_RS15480	0.66	-2.6
3,419,449	-		LRK54_RS15480	0.66	+2.1
3,419,449	-		LRK54_RS15480	0.66	-0.7
3,419,514	+		LRK54_RS15480	0.78	+0.1
3,419,514	+		LRK54_RS15480	0.78	-0.5
3,419,514	+		LRK54_RS15480	0.78	+2.8
3,419,514	+		LRK54_RS15480	0.78	-0.5
3,419,514	+		LRK54_RS15480	0.78	+0.8
3,419,514	+		LRK54_RS15480	0.78	-0.8
3,419,514	+		LRK54_RS15480	0.78	-0.2
3,419,514	+		LRK54_RS15480	0.78	-0.1
3,419,514	+		LRK54_RS15480	0.78	+1.2
3,419,514	+		LRK54_RS15480	0.78	-0.5
3,419,515	-		LRK54_RS15480	0.78	-1.0
3,419,515	-		LRK54_RS15480	0.78	-0.2
3,419,515	-		LRK54_RS15480	0.78	+0.5
3,419,515	-		LRK54_RS15480	0.78	-1.6
3,419,515	-		LRK54_RS15480	0.78	+0.5
3,419,665	+				-0.5
3,419,665	+				-0.7
3,419,665	+				+1.1
3,419,665	+				-0.2
3,419,665	+				-0.7
3,419,665	+				+0.3
3,419,665	+				-0.3
3,419,665	+				+0.4
3,419,665	+				-2.5
3,419,665	+				-0.2
3,419,665	+				-0.4
3,419,665	+				+3.8
3,419,665	+				-1.2
3,419,665	+				+3.8
3,419,665	+				+0.8
3,419,665	+				+0.7
3,419,665	+				+2.1
3,419,666	-				-0.5
3,419,666	-				-0.3
3,419,666	-				+0.5
3,419,666	-				+0.8
3,419,666	-				+2.4
3,419,666	-				+0.4
3,419,666	-				-1.5
3,419,666	-				-0.2
3,419,666	-				-0.9
3,419,666	-				-2.3
3,419,666	-				+0.1
3,419,666	-				-2.3
3,419,666	-				-0.9
3,419,666	-				-0.2
3,419,666	-				-0.7
3,419,666	-				+0.1
3,419,666	-				-0.2
3,419,667	+				+1.4
3,419,667	+				+0.2
3,419,667	+				+0.6
3,419,667	+				-0.8
3,419,667	+				-0.5
3,419,667	+				+0.3
3,419,667	+				+1.4
3,419,667	+				+1.5
3,419,667	+				-0.8
3,419,667	+				-1.3
3,419,667	+				+1.1
3,419,667	+				+1.0
3,419,667	+				-2.3
3,419,667	+				-0.9
3,419,668	-				+0.1
3,419,668	-				+0.5
3,419,668	-				+0.0
3,419,668	-				-1.8
3,419,668	-				-0.6
3,419,668	-				+0.5
3,419,668	-				+0.7
3,419,793	+				-0.1
3,419,793	+				+0.2
3,419,793	+				-1.6
3,419,793	+				-1.4
3,419,793	+				+0.8
3,419,793	+				-0.1
3,419,793	+				+0.7
3,419,793	+				+0.4
3,419,793	+				-0.3
3,419,793	+				-0.6
3,419,793	+				+0.3
3,419,793	+				-0.3
3,419,793	+				-1.0
3,419,793	+				-1.4
3,419,794	-				+0.7
3,419,794	-				+0.9
3,419,794	-				+0.1
3,419,794	-				+0.0
3,419,794	-				-0.2
3,419,794	-				-2.3
3,419,794	-				-2.0
3,419,794	-				+0.1
3,419,794	-				-1.2
3,419,794	-				+1.5
3,419,794	-				+1.3
3,419,794	-				+0.5
3,420,167	+		LRK54_RS15485	0.82	-1.8
3,420,168	-		LRK54_RS15485	0.82	-0.3
3,420,186	+		LRK54_RS15485	0.87	-1.5
3,420,337	+				+0.5
3,420,337	+				-1.7
3,420,337	+				-1.5
3,420,337	+				-0.2
3,420,337	+				+1.5
3,420,337	+				+0.9
3,420,337	+				-0.5
3,420,337	+				-0.1
3,420,337	+				+1.2
3,420,337	+				-0.1
3,420,338	-				-1.9
3,420,338	-				+1.4
3,420,338	-				-2.0
3,420,338	-				+1.1
3,420,338	-				+0.7
3,420,338	-				-1.5
3,420,338	-				+1.9
3,420,338	-				+1.2
3,420,338	-				-0.6
3,420,338	-				+0.2
3,420,338	-				-0.5
3,420,405	+		LRK54_RS15490	0.23	+0.5
3,420,405	+		LRK54_RS15490	0.23	+1.0
3,420,405	+		LRK54_RS15490	0.23	-0.3
3,420,406	-		LRK54_RS15490	0.23	+0.7
3,420,406	-		LRK54_RS15490	0.23	+1.0
3,420,406	-		LRK54_RS15490	0.23	-2.0
3,420,406	-		LRK54_RS15490	0.23	+2.3
3,420,427	+		LRK54_RS15490	0.29	-0.4
3,420,427	+		LRK54_RS15490	0.29	+0.2
3,420,428	-		LRK54_RS15490	0.29	+1.5
3,420,428	-		LRK54_RS15490	0.29	-0.8
3,420,444	+		LRK54_RS15490	0.34	+0.0
3,420,444	+		LRK54_RS15490	0.34	+0.3
3,420,444	+		LRK54_RS15490	0.34	+1.3
3,420,444	+		LRK54_RS15490	0.34	-1.6
3,420,444	+		LRK54_RS15490	0.34	-1.4
3,420,444	+		LRK54_RS15490	0.34	-0.7
3,420,444	+		LRK54_RS15490	0.34	-0.8
3,420,444	+		LRK54_RS15490	0.34	+0.0
3,420,444	+		LRK54_RS15490	0.34	+0.2
3,420,444	+		LRK54_RS15490	0.34	-0.2
3,420,444	+		LRK54_RS15490	0.34	-1.4
3,420,444	+		LRK54_RS15490	0.34	-0.6
3,420,444	+		LRK54_RS15490	0.34	-1.2
3,420,444	+		LRK54_RS15490	0.34	+1.4
3,420,444	+		LRK54_RS15490	0.34	-0.1
3,420,444	+		LRK54_RS15490	0.34	-0.7
3,420,444	+		LRK54_RS15490	0.34	-0.7
3,420,445	-		LRK54_RS15490	0.34	+0.0
3,420,445	-		LRK54_RS15490	0.34	-0.3
3,420,445	-		LRK54_RS15490	0.34	+0.3
3,420,445	-		LRK54_RS15490	0.34	-0.8
3,420,445	-		LRK54_RS15490	0.34	+0.2
3,420,445	-		LRK54_RS15490	0.34	+0.1
3,420,445	-		LRK54_RS15490	0.34	+0.1
3,420,445	-		LRK54_RS15490	0.34	-0.6
3,420,445	-		LRK54_RS15490	0.34	+0.9
3,420,445	-		LRK54_RS15490	0.34	+1.5
3,420,445	-		LRK54_RS15490	0.34	+0.0
3,420,445	-		LRK54_RS15490	0.34	+0.2
3,420,445	-		LRK54_RS15490	0.34	-1.1
3,420,445	-		LRK54_RS15490	0.34	-1.6
3,420,445	-		LRK54_RS15490	0.34	-0.1
3,420,445	-		LRK54_RS15490	0.34	-1.1
3,420,445	-		LRK54_RS15490	0.34	+1.0
3,420,445	-		LRK54_RS15490	0.34	-1.5
3,420,445	-		LRK54_RS15490	0.34	-0.9
3,420,445	-		LRK54_RS15490	0.34	-1.7
3,420,445	-		LRK54_RS15490	0.34	-0.5
3,420,445	-		LRK54_RS15490	0.34	+0.9
3,420,445	-		LRK54_RS15490	0.34	-2.3
3,420,445	-		LRK54_RS15490	0.34	-0.3
3,420,445	-		LRK54_RS15490	0.34	+0.5
3,420,445	-		LRK54_RS15490	0.34	-0.8
3,420,445	-		LRK54_RS15490	0.34	+1.5
3,420,445	-		LRK54_RS15490	0.34	-0.5
3,420,445	-		LRK54_RS15490	0.34	+0.2
3,420,445	-		LRK54_RS15490	0.34	-2.2
3,420,445	-		LRK54_RS15490	0.34	-0.8
3,420,448	+		LRK54_RS15490	0.35	-0.1
3,420,448	+		LRK54_RS15490	0.35	+0.5
3,420,448	+		LRK54_RS15490	0.35	+1.0
3,420,448	+		LRK54_RS15490	0.35	-0.7
3,420,448	+		LRK54_RS15490	0.35	+2.1
3,420,448	+		LRK54_RS15490	0.35	-2.0
3,420,448	+		LRK54_RS15490	0.35	-0.2
3,420,448	+		LRK54_RS15490	0.35	-0.5
3,420,448	+		LRK54_RS15490	0.35	-0.0
3,420,448	+		LRK54_RS15490	0.35	-0.1
3,420,448	+		LRK54_RS15490	0.35	+2.5
3,420,448	+		LRK54_RS15490	0.35	-0.7
3,420,449	-		LRK54_RS15490	0.35	-0.3
3,420,449	-		LRK54_RS15490	0.35	+0.1
3,420,449	-		LRK54_RS15490	0.35	-0.2
3,420,449	-		LRK54_RS15490	0.35	+2.0
3,420,449	-		LRK54_RS15490	0.35	-1.0
3,420,449	-		LRK54_RS15490	0.35	+1.7
3,420,449	-		LRK54_RS15490	0.35	-1.6
3,420,449	-		LRK54_RS15490	0.35	+0.0
3,420,449	-		LRK54_RS15490	0.35	-1.2
3,420,449	-		LRK54_RS15490	0.35	-0.2
3,420,449	-		LRK54_RS15490	0.35	+0.4
3,420,449	-		LRK54_RS15490	0.35	-1.4
3,420,449	-		LRK54_RS15490	0.35	+1.5
3,420,449	-		LRK54_RS15490	0.35	-0.8
3,420,449	-		LRK54_RS15490	0.35	+0.2
3,420,449	-		LRK54_RS15490	0.35	+0.9
3,420,579	-		LRK54_RS15490	0.70	-0.6
3,420,829	+				+0.7
3,420,878	+				+1.0
3,420,879	-				+1.5
3,421,055	+				-0.8
3,421,055	+				-0.0
3,421,056	-				-0.9
3,421,107	+				-1.2
3,421,107	+				+0.5
3,421,108	-				-0.8
3,421,108	-				-1.7
3,421,144	+				+1.3
3,421,144	+				+0.1
3,421,144	+				-1.5
3,421,144	+				+0.6
3,421,145	-				-1.7
3,421,145	-				-0.9
3,421,145	-				+0.3
3,421,145	-				-1.6
3,421,145	-				-0.3
3,421,145	-				+0.9