Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01535 and LRK54_RS01540 are separated by 165 nucleotides LRK54_RS01540 and LRK54_RS01545 overlap by 4 nucleotides LRK54_RS01545 and LRK54_RS01550 are separated by 49 nucleotides LRK54_RS01550 and LRK54_RS01555 are separated by 20 nucleotides
LRK54_RS01535: LRK54_RS01535 - high-potential iron-sulfur protein, at 334,532 to 334,864
_RS01535
LRK54_RS01540: LRK54_RS01540 - methylthioribulose 1-phosphate dehydratase, at 335,030 to 335,680
_RS01540
LRK54_RS01545: LRK54_RS01545 - acireductone dioxygenase, at 335,677 to 336,228
_RS01545
LRK54_RS01550: LRK54_RS01550 - acireductone synthase, at 336,278 to 336,964
_RS01550
LRK54_RS01555: LRK54_RS01555 - peptidase C13, at 336,985 to 337,983
_RS01555
Position (kb) 335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 334.704 kb on + strand, within LRK54_RS01535 at 334.704 kb on + strand, within LRK54_RS01535 at 334.704 kb on + strand, within LRK54_RS01535 at 334.704 kb on + strand, within LRK54_RS01535 at 334.704 kb on + strand, within LRK54_RS01535 at 334.705 kb on - strand, within LRK54_RS01535 at 334.705 kb on - strand, within LRK54_RS01535 at 334.705 kb on - strand, within LRK54_RS01535 at 334.922 kb on + strand at 334.922 kb on + strand at 334.922 kb on + strand at 334.922 kb on + strand at 334.922 kb on + strand at 334.922 kb on + strand at 334.923 kb on - strand at 334.923 kb on - strand at 334.923 kb on - strand at 334.923 kb on - strand at 334.923 kb on - strand at 334.923 kb on - strand at 334.950 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.997 kb on + strand at 334.998 kb on - strand at 334.998 kb on - strand at 334.998 kb on - strand at 334.998 kb on - strand at 334.998 kb on - strand at 334.998 kb on - strand at 334.998 kb on - strand at 334.998 kb on - strand at 334.998 kb on - strand at 334.998 kb on - strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on + strand at 334.999 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.000 kb on - strand at 335.309 kb on + strand, within LRK54_RS01540 at 335.309 kb on + strand, within LRK54_RS01540 at 335.310 kb on - strand, within LRK54_RS01540 at 335.555 kb on + strand, within LRK54_RS01540 at 335.555 kb on + strand, within LRK54_RS01540 at 335.555 kb on + strand, within LRK54_RS01540 at 335.555 kb on + strand, within LRK54_RS01540 at 335.556 kb on - strand, within LRK54_RS01540 at 335.556 kb on - strand, within LRK54_RS01540 at 335.556 kb on - strand, within LRK54_RS01540 at 335.556 kb on - strand, within LRK54_RS01540 at 335.556 kb on - strand, within LRK54_RS01540 at 335.556 kb on - strand, within LRK54_RS01540 at 335.556 kb on - strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.579 kb on + strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.580 kb on - strand, within LRK54_RS01540 at 335.848 kb on + strand, within LRK54_RS01545 at 335.888 kb on - strand, within LRK54_RS01545 at 336.043 kb on + strand, within LRK54_RS01545 at 336.043 kb on + strand, within LRK54_RS01545 at 336.043 kb on + strand, within LRK54_RS01545 at 336.043 kb on + strand, within LRK54_RS01545 at 336.044 kb on - strand, within LRK54_RS01545 at 336.044 kb on - strand, within LRK54_RS01545 at 336.044 kb on - strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.124 kb on + strand, within LRK54_RS01545 at 336.125 kb on - strand, within LRK54_RS01545 at 336.125 kb on - strand, within LRK54_RS01545 at 336.125 kb on - strand, within LRK54_RS01545 at 336.125 kb on - strand, within LRK54_RS01545 at 336.125 kb on - strand, within LRK54_RS01545 at 336.125 kb on - strand, within LRK54_RS01545 at 336.125 kb on - strand, within LRK54_RS01545 at 336.125 kb on - strand, within LRK54_RS01545 at 336.125 kb on - strand, within LRK54_RS01545 at 336.125 kb on - strand, within LRK54_RS01545 at 336.226 kb on + strand at 336.253 kb on + strand at 336.253 kb on + strand at 336.253 kb on + strand at 336.254 kb on - strand at 336.647 kb on + strand, within LRK54_RS01550 at 336.647 kb on + strand, within LRK54_RS01550 at 337.002 kb on + strand at 337.002 kb on + strand at 337.003 kb on - strand at 337.003 kb on - strand at 337.180 kb on + strand, within LRK54_RS01555 at 337.180 kb on + strand, within LRK54_RS01555 at 337.180 kb on + strand, within LRK54_RS01555 at 337.180 kb on + strand, within LRK54_RS01555 at 337.180 kb on + strand, within LRK54_RS01555 at 337.180 kb on + strand, within LRK54_RS01555 at 337.180 kb on + strand, within LRK54_RS01555 at 337.180 kb on + strand, within LRK54_RS01555 at 337.181 kb on - strand, within LRK54_RS01555 at 337.181 kb on - strand, within LRK54_RS01555 at 337.181 kb on - strand, within LRK54_RS01555
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 334,704 + LRK54_RS01535 0.52 -2.1 334,704 + LRK54_RS01535 0.52 +0.2 334,704 + LRK54_RS01535 0.52 -0.3 334,704 + LRK54_RS01535 0.52 -2.0 334,704 + LRK54_RS01535 0.52 +1.5 334,705 - LRK54_RS01535 0.52 +0.3 334,705 - LRK54_RS01535 0.52 -1.1 334,705 - LRK54_RS01535 0.52 +0.8 334,922 + -0.0 334,922 + +0.2 334,922 + -0.6 334,922 + +2.1 334,922 + -0.7 334,922 + -1.4 334,923 - -0.7 334,923 - +0.2 334,923 - +0.8 334,923 - -2.0 334,923 - -0.1 334,923 - -0.9 334,950 + -0.8 334,997 + +1.5 334,997 + -2.7 334,997 + -0.9 334,997 + +2.7 334,997 + -0.2 334,997 + -0.3 334,997 + +0.6 334,997 + -1.3 334,997 + -1.2 334,997 + +1.3 334,997 + +2.4 334,997 + +0.5 334,998 - +0.0 334,998 - +1.2 334,998 - -0.8 334,998 - +0.5 334,998 - +1.5 334,998 - -0.2 334,998 - -1.2 334,998 - +1.1 334,998 - +0.2 334,998 - +2.2 334,999 + -0.2 334,999 + -1.1 334,999 + +0.0 334,999 + +0.5 334,999 + -0.6 334,999 + -1.8 334,999 + +1.2 334,999 + +1.5 334,999 + -1.4 334,999 + +0.5 334,999 + -1.7 334,999 + -1.1 334,999 + +0.6 334,999 + -1.3 334,999 - -1.9 335,000 - -0.0 335,000 - -1.3 335,000 - -0.4 335,000 - +2.4 335,000 - +2.3 335,000 - +1.0 335,000 - -0.2 335,000 - -1.0 335,000 - -2.7 335,000 - +1.1 335,000 - -1.2 335,000 - -1.2 335,000 - -1.2 335,309 + LRK54_RS01540 0.43 -1.8 335,309 + LRK54_RS01540 0.43 -1.0 335,310 - LRK54_RS01540 0.43 -1.1 335,555 + LRK54_RS01540 0.81 +0.5 335,555 + LRK54_RS01540 0.81 +1.7 335,555 + LRK54_RS01540 0.81 -1.1 335,555 + LRK54_RS01540 0.81 -0.7 335,556 - LRK54_RS01540 0.81 -2.3 335,556 - LRK54_RS01540 0.81 +1.2 335,556 - LRK54_RS01540 0.81 -0.6 335,556 - LRK54_RS01540 0.81 +0.3 335,556 - LRK54_RS01540 0.81 -0.0 335,556 - LRK54_RS01540 0.81 +0.6 335,556 - LRK54_RS01540 0.81 +0.2 335,579 + LRK54_RS01540 0.84 +0.9 335,579 + LRK54_RS01540 0.84 -0.9 335,579 + LRK54_RS01540 0.84 -0.8 335,579 + LRK54_RS01540 0.84 +1.6 335,579 + LRK54_RS01540 0.84 -1.0 335,579 + LRK54_RS01540 0.84 -1.7 335,579 + LRK54_RS01540 0.84 +0.2 335,579 + LRK54_RS01540 0.84 +0.6 335,579 + LRK54_RS01540 0.84 +2.3 335,579 + LRK54_RS01540 0.84 +0.2 335,579 + LRK54_RS01540 0.84 +1.6 335,579 + LRK54_RS01540 0.84 +0.2 335,579 + LRK54_RS01540 0.84 -0.0 335,579 + LRK54_RS01540 0.84 +1.0 335,579 + LRK54_RS01540 0.84 -0.4 335,579 + LRK54_RS01540 0.84 +0.9 335,579 + LRK54_RS01540 0.84 +0.2 335,579 + LRK54_RS01540 0.84 -0.2 335,580 - LRK54_RS01540 0.84 -0.2 335,580 - LRK54_RS01540 0.84 -0.6 335,580 - LRK54_RS01540 0.84 +1.0 335,580 - LRK54_RS01540 0.84 +1.0 335,580 - LRK54_RS01540 0.84 +0.6 335,580 - LRK54_RS01540 0.84 +1.5 335,580 - LRK54_RS01540 0.84 +1.5 335,580 - LRK54_RS01540 0.84 -1.1 335,580 - LRK54_RS01540 0.84 +0.3 335,580 - LRK54_RS01540 0.84 -1.2 335,580 - LRK54_RS01540 0.84 -1.8 335,580 - LRK54_RS01540 0.84 +1.0 335,580 - LRK54_RS01540 0.84 +0.2 335,580 - LRK54_RS01540 0.84 +0.6 335,580 - LRK54_RS01540 0.84 -0.3 335,580 - LRK54_RS01540 0.84 +2.1 335,580 - LRK54_RS01540 0.84 -1.2 335,580 - LRK54_RS01540 0.84 +1.0 335,580 - LRK54_RS01540 0.84 +1.0 335,848 + LRK54_RS01545 0.31 -1.0 335,888 - LRK54_RS01545 0.38 +0.2 336,043 + LRK54_RS01545 0.66 -1.1 336,043 + LRK54_RS01545 0.66 +0.8 336,043 + LRK54_RS01545 0.66 -1.4 336,043 + LRK54_RS01545 0.66 +1.0 336,044 - LRK54_RS01545 0.66 -1.5 336,044 - LRK54_RS01545 0.66 +0.3 336,044 - LRK54_RS01545 0.66 -1.6 336,124 + LRK54_RS01545 0.81 +1.8 336,124 + LRK54_RS01545 0.81 -0.8 336,124 + LRK54_RS01545 0.81 -1.6 336,124 + LRK54_RS01545 0.81 +1.0 336,124 + LRK54_RS01545 0.81 -2.8 336,124 + LRK54_RS01545 0.81 -1.2 336,124 + LRK54_RS01545 0.81 -1.5 336,124 + LRK54_RS01545 0.81 +0.3 336,124 + LRK54_RS01545 0.81 -1.2 336,124 + LRK54_RS01545 0.81 -0.8 336,124 + LRK54_RS01545 0.81 -1.5 336,124 + LRK54_RS01545 0.81 -2.0 336,125 - LRK54_RS01545 0.81 -0.5 336,125 - LRK54_RS01545 0.81 -1.0 336,125 - LRK54_RS01545 0.81 +0.3 336,125 - LRK54_RS01545 0.81 -0.2 336,125 - LRK54_RS01545 0.81 -1.3 336,125 - LRK54_RS01545 0.81 -0.3 336,125 - LRK54_RS01545 0.81 +0.8 336,125 - LRK54_RS01545 0.81 -1.2 336,125 - LRK54_RS01545 0.81 +0.8 336,125 - LRK54_RS01545 0.81 -0.1 336,226 + +0.2 336,253 + +0.2 336,253 + -1.9 336,253 + -1.7 336,254 - -0.4 336,647 + LRK54_RS01550 0.54 +0.8 336,647 + LRK54_RS01550 0.54 +0.6 337,002 + -1.2 337,002 + -1.6 337,003 - -1.4 337,003 - +0.6 337,180 + LRK54_RS01555 0.20 -1.5 337,180 + LRK54_RS01555 0.20 -2.1 337,180 + LRK54_RS01555 0.20 -1.3 337,180 + LRK54_RS01555 0.20 -0.0 337,180 + LRK54_RS01555 0.20 +0.7 337,180 + LRK54_RS01555 0.20 -0.8 337,180 + LRK54_RS01555 0.20 -1.3 337,180 + LRK54_RS01555 0.20 -1.9 337,181 - LRK54_RS01555 0.20 +1.0 337,181 - LRK54_RS01555 0.20 -1.5 337,181 - LRK54_RS01555 0.20 +0.3
Or see this region's nucleotide sequence