Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00138 and ECD_00139 are separated by 34 nucleotides ECD_00139 and ECD_00140 are separated by 104 nucleotides ECD_00140 and ECD_00141 are separated by 369 nucleotides ECD_00141 and ECD_00142 overlap by 4 nucleotides
ECD_00138: ECD_00138 - putative outer membrane usher protein, at 155,671 to 158,271
_00138
ECD_00139: ECD_00139 - putative periplasmic pilin chaperone, at 158,306 to 159,046
_00139
ECD_00140: ECD_00140 - putative fimbrial-like adhesin protein, at 159,151 to 159,735
_00140
ECD_00141: ECD_00141 - 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase, at 160,105 to 160,584
_00141
ECD_00142: ECD_00142 - poly(A) polymerase, at 160,581 to 161,945
_00142
Position (kb) 159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 158.166 kb on - strand at 158.242 kb on - strand at 158.485 kb on + strand, within ECD_00139 at 158.496 kb on + strand, within ECD_00139 at 158.497 kb on - strand, within ECD_00139 at 158.499 kb on + strand, within ECD_00139 at 158.623 kb on + strand, within ECD_00139 at 158.828 kb on - strand, within ECD_00139 at 159.339 kb on + strand, within ECD_00140 at 160.572 kb on - strand at 160.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 158,166 - -0.0 158,242 - -0.6 158,485 + ECD_00139 0.24 +0.6 158,496 + ECD_00139 0.26 +1.1 158,497 - ECD_00139 0.26 -0.6 158,499 + ECD_00139 0.26 -0.3 158,623 + ECD_00139 0.43 -0.3 158,828 - ECD_00139 0.70 -1.9 159,339 + ECD_00140 0.32 -0.1 160,572 - +0.6 160,572 - +1.2
Or see this region's nucleotide sequence