Strain Fitness in Escherichia coli BL21 around ECD_01098

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01097 and ECD_01098 are separated by 59 nucleotidesECD_01098 and ECD_01099 are separated by 333 nucleotidesECD_01099 and ECD_01100 are separated by 2 nucleotides ECD_01097: ECD_01097 - fused glucose-specific PTS enzymes: IIB component/IIC component, at 1,160,436 to 1,161,869 _01097 ECD_01098: ECD_01098 - ferric-rhodotorulic acid outer membrane transporter, at 1,161,929 to 1,164,118 _01098 ECD_01099: ECD_01099 - purine nucleoside phosphoramidase, dadA activator protein, at 1,164,452 to 1,164,811 _01099 ECD_01100: ECD_01100 - uncharacterized protein, at 1,164,814 to 1,165,191 _01100 Position (kb) 1161 1162 1163 1164 1165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1161.027 kb on + strand, within ECD_01097at 1161.155 kb on + strand, within ECD_01097at 1161.281 kb on + strand, within ECD_01097at 1161.438 kb on - strand, within ECD_01097at 1161.438 kb on - strand, within ECD_01097at 1161.537 kb on + strand, within ECD_01097at 1161.540 kb on + strand, within ECD_01097at 1161.699 kb on - strand, within ECD_01097at 1162.144 kb on - strandat 1162.405 kb on + strand, within ECD_01098at 1162.510 kb on - strand, within ECD_01098at 1162.584 kb on + strand, within ECD_01098at 1162.753 kb on - strand, within ECD_01098at 1163.186 kb on - strand, within ECD_01098at 1163.186 kb on - strand, within ECD_01098at 1163.251 kb on - strand, within ECD_01098at 1163.503 kb on - strand, within ECD_01098at 1163.527 kb on - strand, within ECD_01098at 1163.717 kb on - strand, within ECD_01098at 1163.729 kb on - strand, within ECD_01098at 1163.731 kb on - strand, within ECD_01098at 1163.735 kb on - strand, within ECD_01098at 1163.735 kb on - strand, within ECD_01098at 1164.045 kb on - strandat 1164.181 kb on - strandat 1164.382 kb on + strandat 1164.387 kb on + strandat 1164.466 kb on + strandat 1164.568 kb on + strand, within ECD_01099

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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1,161,027 + ECD_01097 0.41 -2.2
1,161,155 + ECD_01097 0.50 -2.9
1,161,281 + ECD_01097 0.59 -1.6
1,161,438 - ECD_01097 0.70 +1.1
1,161,438 - ECD_01097 0.70 -0.4
1,161,537 + ECD_01097 0.77 +0.5
1,161,540 + ECD_01097 0.77 +0.2
1,161,699 - ECD_01097 0.88 +1.1
1,162,144 - +1.6
1,162,405 + ECD_01098 0.22 +1.8
1,162,510 - ECD_01098 0.27 +0.6
1,162,584 + ECD_01098 0.30 -0.0
1,162,753 - ECD_01098 0.38 +0.1
1,163,186 - ECD_01098 0.57 +0.0
1,163,186 - ECD_01098 0.57 +0.1
1,163,251 - ECD_01098 0.60 +0.1
1,163,503 - ECD_01098 0.72 +0.1
1,163,527 - ECD_01098 0.73 +0.6
1,163,717 - ECD_01098 0.82 +1.3
1,163,729 - ECD_01098 0.82 -0.1
1,163,731 - ECD_01098 0.82 +0.8
1,163,735 - ECD_01098 0.82 +1.4
1,163,735 - ECD_01098 0.82 +1.3
1,164,045 - +0.6
1,164,181 - -0.5
1,164,382 + +0.8
1,164,387 + -0.2
1,164,466 + -0.8
1,164,568 + ECD_01099 0.32 +1.9

Or see this region's nucleotide sequence