Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03128

Experiment: D-Tagatose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03127 and MPMX20_03128 are separated by 171 nucleotidesMPMX20_03128 and MPMX20_03129 are separated by 99 nucleotides MPMX20_03127: MPMX20_03127 - Lysine-specific permease, at 3,285,428 to 3,286,897 _03127 MPMX20_03128: MPMX20_03128 - HTH-type transcriptional activator CmpR, at 3,287,069 to 3,287,935 _03128 MPMX20_03129: MPMX20_03129 - hypothetical protein, at 3,288,035 to 3,289,081 _03129 Position (kb) 3287 3288Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3286.082 kb on - strand, within MPMX20_03127at 3286.087 kb on + strand, within MPMX20_03127at 3286.096 kb on - strand, within MPMX20_03127at 3286.137 kb on + strand, within MPMX20_03127at 3286.187 kb on + strand, within MPMX20_03127at 3286.239 kb on - strand, within MPMX20_03127at 3286.346 kb on - strand, within MPMX20_03127at 3286.346 kb on - strand, within MPMX20_03127at 3286.372 kb on - strand, within MPMX20_03127at 3286.427 kb on + strand, within MPMX20_03127at 3286.505 kb on - strand, within MPMX20_03127at 3286.505 kb on - strand, within MPMX20_03127at 3286.505 kb on - strand, within MPMX20_03127at 3286.543 kb on + strand, within MPMX20_03127at 3286.543 kb on + strand, within MPMX20_03127at 3286.551 kb on - strand, within MPMX20_03127at 3286.584 kb on - strand, within MPMX20_03127at 3286.586 kb on - strand, within MPMX20_03127at 3286.604 kb on - strand, within MPMX20_03127at 3286.604 kb on - strand, within MPMX20_03127at 3286.613 kb on + strand, within MPMX20_03127at 3286.621 kb on - strand, within MPMX20_03127at 3286.722 kb on - strand, within MPMX20_03127at 3286.722 kb on - strand, within MPMX20_03127at 3286.843 kb on + strandat 3286.919 kb on - strandat 3286.969 kb on + strandat 3286.994 kb on - strandat 3287.046 kb on + strandat 3287.054 kb on - strandat 3287.054 kb on - strandat 3287.054 kb on - strandat 3287.136 kb on - strandat 3287.154 kb on + strandat 3287.201 kb on - strand, within MPMX20_03128at 3287.242 kb on + strand, within MPMX20_03128at 3287.242 kb on + strand, within MPMX20_03128at 3287.242 kb on + strand, within MPMX20_03128at 3287.250 kb on - strand, within MPMX20_03128at 3287.250 kb on - strand, within MPMX20_03128at 3287.250 kb on - strand, within MPMX20_03128at 3287.282 kb on - strand, within MPMX20_03128at 3287.284 kb on + strand, within MPMX20_03128at 3287.292 kb on - strand, within MPMX20_03128at 3287.292 kb on - strand, within MPMX20_03128at 3287.311 kb on + strand, within MPMX20_03128at 3287.313 kb on + strand, within MPMX20_03128at 3287.354 kb on + strand, within MPMX20_03128at 3287.354 kb on + strand, within MPMX20_03128at 3287.359 kb on + strand, within MPMX20_03128at 3287.386 kb on - strand, within MPMX20_03128at 3287.500 kb on - strand, within MPMX20_03128at 3287.556 kb on - strand, within MPMX20_03128at 3287.557 kb on - strand, within MPMX20_03128at 3287.723 kb on - strand, within MPMX20_03128at 3287.791 kb on + strand, within MPMX20_03128at 3287.819 kb on + strand, within MPMX20_03128at 3287.824 kb on + strand, within MPMX20_03128at 3287.849 kb on - strandat 3287.849 kb on - strandat 3287.849 kb on - strandat 3287.930 kb on - strandat 3288.036 kb on + strandat 3288.097 kb on - strandat 3288.112 kb on - strandat 3288.140 kb on - strand, within MPMX20_03129at 3288.166 kb on - strand, within MPMX20_03129at 3288.168 kb on + strand, within MPMX20_03129at 3288.175 kb on - strand, within MPMX20_03129at 3288.282 kb on + strand, within MPMX20_03129at 3288.290 kb on - strand, within MPMX20_03129at 3288.302 kb on + strand, within MPMX20_03129at 3288.302 kb on + strand, within MPMX20_03129at 3288.302 kb on + strand, within MPMX20_03129at 3288.310 kb on - strand, within MPMX20_03129at 3288.383 kb on - strand, within MPMX20_03129at 3288.407 kb on + strand, within MPMX20_03129at 3288.478 kb on + strand, within MPMX20_03129at 3288.504 kb on - strand, within MPMX20_03129at 3288.578 kb on + strand, within MPMX20_03129at 3288.603 kb on + strand, within MPMX20_03129at 3288.607 kb on - strand, within MPMX20_03129at 3288.611 kb on - strand, within MPMX20_03129at 3288.611 kb on - strand, within MPMX20_03129at 3288.669 kb on - strand, within MPMX20_03129at 3288.681 kb on + strand, within MPMX20_03129at 3288.737 kb on + strand, within MPMX20_03129at 3288.740 kb on - strand, within MPMX20_03129at 3288.742 kb on + strand, within MPMX20_03129at 3288.829 kb on - strand, within MPMX20_03129at 3288.865 kb on - strand, within MPMX20_03129at 3288.865 kb on - strand, within MPMX20_03129at 3288.867 kb on - strand, within MPMX20_03129at 3288.888 kb on - strand, within MPMX20_03129

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (C)
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3,286,082 - MPMX20_03127 0.44 -2.3
3,286,087 + MPMX20_03127 0.45 +2.0
3,286,096 - MPMX20_03127 0.45 +0.2
3,286,137 + MPMX20_03127 0.48 +2.3
3,286,187 + MPMX20_03127 0.52 -2.5
3,286,239 - MPMX20_03127 0.55 +0.9
3,286,346 - MPMX20_03127 0.62 +1.3
3,286,346 - MPMX20_03127 0.62 -1.0
3,286,372 - MPMX20_03127 0.64 -0.3
3,286,427 + MPMX20_03127 0.68 +1.1
3,286,505 - MPMX20_03127 0.73 +1.0
3,286,505 - MPMX20_03127 0.73 +0.2
3,286,505 - MPMX20_03127 0.73 -1.5
3,286,543 + MPMX20_03127 0.76 -0.1
3,286,543 + MPMX20_03127 0.76 +1.7
3,286,551 - MPMX20_03127 0.76 +0.0
3,286,584 - MPMX20_03127 0.79 +2.7
3,286,586 - MPMX20_03127 0.79 +1.5
3,286,604 - MPMX20_03127 0.80 -0.3
3,286,604 - MPMX20_03127 0.80 +0.0
3,286,613 + MPMX20_03127 0.81 -2.1
3,286,621 - MPMX20_03127 0.81 -1.0
3,286,722 - MPMX20_03127 0.88 +0.5
3,286,722 - MPMX20_03127 0.88 -2.4
3,286,843 + +1.4
3,286,919 - -1.0
3,286,969 + +0.7
3,286,994 - -1.3
3,287,046 + +0.6
3,287,054 - -0.3
3,287,054 - +0.2
3,287,054 - +0.4
3,287,136 - +0.8
3,287,154 + -2.9
3,287,201 - MPMX20_03128 0.15 +1.3
3,287,242 + MPMX20_03128 0.20 -0.7
3,287,242 + MPMX20_03128 0.20 -1.1
3,287,242 + MPMX20_03128 0.20 -0.6
3,287,250 - MPMX20_03128 0.21 -2.2
3,287,250 - MPMX20_03128 0.21 +0.3
3,287,250 - MPMX20_03128 0.21 +0.9
3,287,282 - MPMX20_03128 0.25 +1.1
3,287,284 + MPMX20_03128 0.25 -0.5
3,287,292 - MPMX20_03128 0.26 +0.9
3,287,292 - MPMX20_03128 0.26 +0.8
3,287,311 + MPMX20_03128 0.28 -1.5
3,287,313 + MPMX20_03128 0.28 -1.4
3,287,354 + MPMX20_03128 0.33 -0.8
3,287,354 + MPMX20_03128 0.33 -3.3
3,287,359 + MPMX20_03128 0.33 -0.6
3,287,386 - MPMX20_03128 0.37 -1.2
3,287,500 - MPMX20_03128 0.50 +1.1
3,287,556 - MPMX20_03128 0.56 +0.2
3,287,557 - MPMX20_03128 0.56 -0.3
3,287,723 - MPMX20_03128 0.75 -0.9
3,287,791 + MPMX20_03128 0.83 -1.8
3,287,819 + MPMX20_03128 0.87 -0.7
3,287,824 + MPMX20_03128 0.87 -1.3
3,287,849 - +2.3
3,287,849 - +0.0
3,287,849 - -2.6
3,287,930 - +1.2
3,288,036 + +0.6
3,288,097 - +0.0
3,288,112 - +0.0
3,288,140 - MPMX20_03129 0.10 +0.5
3,288,166 - MPMX20_03129 0.13 +0.1
3,288,168 + MPMX20_03129 0.13 -3.1
3,288,175 - MPMX20_03129 0.13 +0.2
3,288,282 + MPMX20_03129 0.24 +0.4
3,288,290 - MPMX20_03129 0.24 +0.8
3,288,302 + MPMX20_03129 0.26 +1.4
3,288,302 + MPMX20_03129 0.26 +0.5
3,288,302 + MPMX20_03129 0.26 -2.8
3,288,310 - MPMX20_03129 0.26 +0.0
3,288,383 - MPMX20_03129 0.33 -1.8
3,288,407 + MPMX20_03129 0.36 -1.3
3,288,478 + MPMX20_03129 0.42 +0.2
3,288,504 - MPMX20_03129 0.45 -1.0
3,288,578 + MPMX20_03129 0.52 -0.2
3,288,603 + MPMX20_03129 0.54 -4.0
3,288,607 - MPMX20_03129 0.55 -1.5
3,288,611 - MPMX20_03129 0.55 -2.5
3,288,611 - MPMX20_03129 0.55 -0.8
3,288,669 - MPMX20_03129 0.61 +0.0
3,288,681 + MPMX20_03129 0.62 -0.2
3,288,737 + MPMX20_03129 0.67 -0.4
3,288,740 - MPMX20_03129 0.67 -0.1
3,288,742 + MPMX20_03129 0.68 -1.1
3,288,829 - MPMX20_03129 0.76 -1.8
3,288,865 - MPMX20_03129 0.79 +0.7
3,288,865 - MPMX20_03129 0.79 -1.4
3,288,867 - MPMX20_03129 0.79 -0.4
3,288,888 - MPMX20_03129 0.81 -2.0

Or see this region's nucleotide sequence