Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03127 and MPMX20_03128 are separated by 171 nucleotides MPMX20_03128 and MPMX20_03129 are separated by 99 nucleotides
MPMX20_03127: MPMX20_03127 - Lysine-specific permease, at 3,285,428 to 3,286,897
_03127
MPMX20_03128: MPMX20_03128 - HTH-type transcriptional activator CmpR, at 3,287,069 to 3,287,935
_03128
MPMX20_03129: MPMX20_03129 - hypothetical protein, at 3,288,035 to 3,289,081
_03129
Position (kb)
3287
3288 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3286.082 kb on - strand, within MPMX20_03127 at 3286.087 kb on + strand, within MPMX20_03127 at 3286.096 kb on - strand, within MPMX20_03127 at 3286.137 kb on + strand, within MPMX20_03127 at 3286.187 kb on + strand, within MPMX20_03127 at 3286.239 kb on - strand, within MPMX20_03127 at 3286.346 kb on - strand, within MPMX20_03127 at 3286.346 kb on - strand, within MPMX20_03127 at 3286.372 kb on - strand, within MPMX20_03127 at 3286.427 kb on + strand, within MPMX20_03127 at 3286.505 kb on - strand, within MPMX20_03127 at 3286.505 kb on - strand, within MPMX20_03127 at 3286.505 kb on - strand, within MPMX20_03127 at 3286.543 kb on + strand, within MPMX20_03127 at 3286.543 kb on + strand, within MPMX20_03127 at 3286.551 kb on - strand, within MPMX20_03127 at 3286.584 kb on - strand, within MPMX20_03127 at 3286.586 kb on - strand, within MPMX20_03127 at 3286.604 kb on - strand, within MPMX20_03127 at 3286.604 kb on - strand, within MPMX20_03127 at 3286.613 kb on + strand, within MPMX20_03127 at 3286.621 kb on - strand, within MPMX20_03127 at 3286.722 kb on - strand, within MPMX20_03127 at 3286.722 kb on - strand, within MPMX20_03127 at 3286.843 kb on + strand at 3286.919 kb on - strand at 3286.969 kb on + strand at 3286.994 kb on - strand at 3287.046 kb on + strand at 3287.054 kb on - strand at 3287.054 kb on - strand at 3287.054 kb on - strand at 3287.136 kb on - strand at 3287.154 kb on + strand at 3287.201 kb on - strand, within MPMX20_03128 at 3287.242 kb on + strand, within MPMX20_03128 at 3287.242 kb on + strand, within MPMX20_03128 at 3287.242 kb on + strand, within MPMX20_03128 at 3287.250 kb on - strand, within MPMX20_03128 at 3287.250 kb on - strand, within MPMX20_03128 at 3287.250 kb on - strand, within MPMX20_03128 at 3287.282 kb on - strand, within MPMX20_03128 at 3287.284 kb on + strand, within MPMX20_03128 at 3287.292 kb on - strand, within MPMX20_03128 at 3287.292 kb on - strand, within MPMX20_03128 at 3287.311 kb on + strand, within MPMX20_03128 at 3287.313 kb on + strand, within MPMX20_03128 at 3287.354 kb on + strand, within MPMX20_03128 at 3287.354 kb on + strand, within MPMX20_03128 at 3287.359 kb on + strand, within MPMX20_03128 at 3287.386 kb on - strand, within MPMX20_03128 at 3287.500 kb on - strand, within MPMX20_03128 at 3287.556 kb on - strand, within MPMX20_03128 at 3287.557 kb on - strand, within MPMX20_03128 at 3287.723 kb on - strand, within MPMX20_03128 at 3287.791 kb on + strand, within MPMX20_03128 at 3287.819 kb on + strand, within MPMX20_03128 at 3287.824 kb on + strand, within MPMX20_03128 at 3287.849 kb on - strand at 3287.849 kb on - strand at 3287.849 kb on - strand at 3287.930 kb on - strand at 3288.036 kb on + strand at 3288.097 kb on - strand at 3288.112 kb on - strand at 3288.140 kb on - strand, within MPMX20_03129 at 3288.166 kb on - strand, within MPMX20_03129 at 3288.168 kb on + strand, within MPMX20_03129 at 3288.175 kb on - strand, within MPMX20_03129 at 3288.282 kb on + strand, within MPMX20_03129 at 3288.290 kb on - strand, within MPMX20_03129 at 3288.302 kb on + strand, within MPMX20_03129 at 3288.302 kb on + strand, within MPMX20_03129 at 3288.302 kb on + strand, within MPMX20_03129 at 3288.310 kb on - strand, within MPMX20_03129 at 3288.383 kb on - strand, within MPMX20_03129 at 3288.407 kb on + strand, within MPMX20_03129 at 3288.478 kb on + strand, within MPMX20_03129 at 3288.504 kb on - strand, within MPMX20_03129 at 3288.578 kb on + strand, within MPMX20_03129 at 3288.603 kb on + strand, within MPMX20_03129 at 3288.607 kb on - strand, within MPMX20_03129 at 3288.611 kb on - strand, within MPMX20_03129 at 3288.611 kb on - strand, within MPMX20_03129 at 3288.669 kb on - strand, within MPMX20_03129 at 3288.681 kb on + strand, within MPMX20_03129 at 3288.737 kb on + strand, within MPMX20_03129 at 3288.740 kb on - strand, within MPMX20_03129 at 3288.742 kb on + strand, within MPMX20_03129 at 3288.829 kb on - strand, within MPMX20_03129 at 3288.865 kb on - strand, within MPMX20_03129 at 3288.865 kb on - strand, within MPMX20_03129 at 3288.867 kb on - strand, within MPMX20_03129 at 3288.888 kb on - strand, within MPMX20_03129
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 3,286,082 - MPMX20_03127 0.44 -2.3 3,286,087 + MPMX20_03127 0.45 +2.0 3,286,096 - MPMX20_03127 0.45 +0.2 3,286,137 + MPMX20_03127 0.48 +2.3 3,286,187 + MPMX20_03127 0.52 -2.5 3,286,239 - MPMX20_03127 0.55 +0.9 3,286,346 - MPMX20_03127 0.62 +1.3 3,286,346 - MPMX20_03127 0.62 -1.0 3,286,372 - MPMX20_03127 0.64 -0.3 3,286,427 + MPMX20_03127 0.68 +1.1 3,286,505 - MPMX20_03127 0.73 +1.0 3,286,505 - MPMX20_03127 0.73 +0.2 3,286,505 - MPMX20_03127 0.73 -1.5 3,286,543 + MPMX20_03127 0.76 -0.1 3,286,543 + MPMX20_03127 0.76 +1.7 3,286,551 - MPMX20_03127 0.76 +0.0 3,286,584 - MPMX20_03127 0.79 +2.7 3,286,586 - MPMX20_03127 0.79 +1.5 3,286,604 - MPMX20_03127 0.80 -0.3 3,286,604 - MPMX20_03127 0.80 +0.0 3,286,613 + MPMX20_03127 0.81 -2.1 3,286,621 - MPMX20_03127 0.81 -1.0 3,286,722 - MPMX20_03127 0.88 +0.5 3,286,722 - MPMX20_03127 0.88 -2.4 3,286,843 + +1.4 3,286,919 - -1.0 3,286,969 + +0.7 3,286,994 - -1.3 3,287,046 + +0.6 3,287,054 - -0.3 3,287,054 - +0.2 3,287,054 - +0.4 3,287,136 - +0.8 3,287,154 + -2.9 3,287,201 - MPMX20_03128 0.15 +1.3 3,287,242 + MPMX20_03128 0.20 -0.7 3,287,242 + MPMX20_03128 0.20 -1.1 3,287,242 + MPMX20_03128 0.20 -0.6 3,287,250 - MPMX20_03128 0.21 -2.2 3,287,250 - MPMX20_03128 0.21 +0.3 3,287,250 - MPMX20_03128 0.21 +0.9 3,287,282 - MPMX20_03128 0.25 +1.1 3,287,284 + MPMX20_03128 0.25 -0.5 3,287,292 - MPMX20_03128 0.26 +0.9 3,287,292 - MPMX20_03128 0.26 +0.8 3,287,311 + MPMX20_03128 0.28 -1.5 3,287,313 + MPMX20_03128 0.28 -1.4 3,287,354 + MPMX20_03128 0.33 -0.8 3,287,354 + MPMX20_03128 0.33 -3.3 3,287,359 + MPMX20_03128 0.33 -0.6 3,287,386 - MPMX20_03128 0.37 -1.2 3,287,500 - MPMX20_03128 0.50 +1.1 3,287,556 - MPMX20_03128 0.56 +0.2 3,287,557 - MPMX20_03128 0.56 -0.3 3,287,723 - MPMX20_03128 0.75 -0.9 3,287,791 + MPMX20_03128 0.83 -1.8 3,287,819 + MPMX20_03128 0.87 -0.7 3,287,824 + MPMX20_03128 0.87 -1.3 3,287,849 - +2.3 3,287,849 - +0.0 3,287,849 - -2.6 3,287,930 - +1.2 3,288,036 + +0.6 3,288,097 - +0.0 3,288,112 - +0.0 3,288,140 - MPMX20_03129 0.10 +0.5 3,288,166 - MPMX20_03129 0.13 +0.1 3,288,168 + MPMX20_03129 0.13 -3.1 3,288,175 - MPMX20_03129 0.13 +0.2 3,288,282 + MPMX20_03129 0.24 +0.4 3,288,290 - MPMX20_03129 0.24 +0.8 3,288,302 + MPMX20_03129 0.26 +1.4 3,288,302 + MPMX20_03129 0.26 +0.5 3,288,302 + MPMX20_03129 0.26 -2.8 3,288,310 - MPMX20_03129 0.26 +0.0 3,288,383 - MPMX20_03129 0.33 -1.8 3,288,407 + MPMX20_03129 0.36 -1.3 3,288,478 + MPMX20_03129 0.42 +0.2 3,288,504 - MPMX20_03129 0.45 -1.0 3,288,578 + MPMX20_03129 0.52 -0.2 3,288,603 + MPMX20_03129 0.54 -4.0 3,288,607 - MPMX20_03129 0.55 -1.5 3,288,611 - MPMX20_03129 0.55 -2.5 3,288,611 - MPMX20_03129 0.55 -0.8 3,288,669 - MPMX20_03129 0.61 +0.0 3,288,681 + MPMX20_03129 0.62 -0.2 3,288,737 + MPMX20_03129 0.67 -0.4 3,288,740 - MPMX20_03129 0.67 -0.1 3,288,742 + MPMX20_03129 0.68 -1.1 3,288,829 - MPMX20_03129 0.76 -1.8 3,288,865 - MPMX20_03129 0.79 +0.7 3,288,865 - MPMX20_03129 0.79 -1.4 3,288,867 - MPMX20_03129 0.79 -0.4 3,288,888 - MPMX20_03129 0.81 -2.0
Or see this region's nucleotide sequence