Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03466 and MPMX20_03467 overlap by 4 nucleotides MPMX20_03467 and MPMX20_03468 are separated by 60 nucleotides MPMX20_03468 and MPMX20_03469 are separated by 10 nucleotides
MPMX20_03466: MPMX20_03466 - Bifunctional chorismate mutase/prephenate dehydratase, at 3,657,537 to 3,658,697
_03466
MPMX20_03467: MPMX20_03467 - 6-deoxy-6-sulfogluconolactonase, at 3,658,694 to 3,659,566
_03467
MPMX20_03468: MPMX20_03468 - T-protein, at 3,659,627 to 3,660,748
_03468
MPMX20_03469: MPMX20_03469 - Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive, at 3,660,759 to 3,661,829
_03469
Position (kb)
3659
3660
3661 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3658.689 kb on - strand at 3658.752 kb on - strand at 3658.899 kb on - strand, within MPMX20_03467 at 3658.913 kb on - strand, within MPMX20_03467 at 3658.977 kb on + strand, within MPMX20_03467 at 3658.983 kb on + strand, within MPMX20_03467 at 3658.985 kb on - strand, within MPMX20_03467 at 3658.985 kb on - strand, within MPMX20_03467 at 3658.996 kb on - strand, within MPMX20_03467 at 3658.999 kb on + strand, within MPMX20_03467 at 3659.007 kb on - strand, within MPMX20_03467 at 3659.080 kb on + strand, within MPMX20_03467 at 3659.088 kb on - strand, within MPMX20_03467 at 3659.088 kb on - strand, within MPMX20_03467 at 3659.191 kb on - strand, within MPMX20_03467 at 3659.220 kb on - strand, within MPMX20_03467 at 3659.223 kb on - strand, within MPMX20_03467 at 3659.237 kb on - strand, within MPMX20_03467 at 3659.319 kb on + strand, within MPMX20_03467 at 3659.376 kb on + strand, within MPMX20_03467 at 3659.376 kb on + strand, within MPMX20_03467 at 3659.386 kb on + strand, within MPMX20_03467 at 3659.386 kb on + strand, within MPMX20_03467 at 3659.386 kb on + strand, within MPMX20_03467 at 3659.386 kb on + strand, within MPMX20_03467 at 3659.396 kb on + strand, within MPMX20_03467 at 3659.465 kb on - strand, within MPMX20_03467 at 3659.478 kb on + strand, within MPMX20_03467 at 3659.478 kb on + strand, within MPMX20_03467 at 3659.478 kb on + strand, within MPMX20_03467 at 3659.486 kb on - strand at 3659.486 kb on - strand at 3659.486 kb on - strand at 3659.561 kb on + strand at 3659.561 kb on + strand at 3659.569 kb on - strand at 3659.659 kb on - strand at 3659.755 kb on + strand, within MPMX20_03468 at 3659.762 kb on + strand, within MPMX20_03468 at 3659.763 kb on - strand, within MPMX20_03468 at 3659.803 kb on + strand, within MPMX20_03468 at 3659.803 kb on + strand, within MPMX20_03468 at 3659.803 kb on + strand, within MPMX20_03468 at 3659.811 kb on - strand, within MPMX20_03468 at 3659.821 kb on - strand, within MPMX20_03468 at 3659.851 kb on + strand, within MPMX20_03468 at 3659.895 kb on - strand, within MPMX20_03468 at 3659.963 kb on + strand, within MPMX20_03468 at 3660.022 kb on - strand, within MPMX20_03468 at 3660.043 kb on - strand, within MPMX20_03468 at 3660.072 kb on - strand, within MPMX20_03468 at 3660.074 kb on + strand, within MPMX20_03468 at 3660.084 kb on + strand, within MPMX20_03468 at 3660.102 kb on + strand, within MPMX20_03468 at 3660.115 kb on - strand, within MPMX20_03468 at 3660.119 kb on - strand, within MPMX20_03468 at 3660.313 kb on - strand, within MPMX20_03468 at 3660.334 kb on + strand, within MPMX20_03468 at 3660.432 kb on - strand, within MPMX20_03468 at 3660.432 kb on - strand, within MPMX20_03468 at 3660.529 kb on - strand, within MPMX20_03468 at 3660.666 kb on + strand at 3660.666 kb on + strand at 3660.674 kb on - strand at 3660.696 kb on + strand at 3660.704 kb on - strand at 3660.704 kb on - strand at 3660.704 kb on - strand at 3660.731 kb on + strand at 3660.756 kb on - strand at 3660.756 kb on - strand at 3660.864 kb on + strand at 3660.869 kb on + strand, within MPMX20_03469 at 3660.869 kb on + strand, within MPMX20_03469 at 3660.869 kb on + strand, within MPMX20_03469 at 3660.877 kb on - strand, within MPMX20_03469 at 3660.879 kb on + strand, within MPMX20_03469 at 3660.999 kb on - strand, within MPMX20_03469 at 3661.053 kb on - strand, within MPMX20_03469 at 3661.075 kb on + strand, within MPMX20_03469 at 3661.085 kb on + strand, within MPMX20_03469 at 3661.101 kb on - strand, within MPMX20_03469 at 3661.137 kb on - strand, within MPMX20_03469 at 3661.147 kb on + strand, within MPMX20_03469 at 3661.155 kb on - strand, within MPMX20_03469 at 3661.155 kb on - strand, within MPMX20_03469 at 3661.176 kb on - strand, within MPMX20_03469 at 3661.181 kb on - strand, within MPMX20_03469 at 3661.187 kb on + strand, within MPMX20_03469 at 3661.195 kb on - strand, within MPMX20_03469 at 3661.292 kb on + strand, within MPMX20_03469 at 3661.322 kb on + strand, within MPMX20_03469 at 3661.322 kb on + strand, within MPMX20_03469 at 3661.418 kb on - strand, within MPMX20_03469 at 3661.423 kb on - strand, within MPMX20_03469 at 3661.503 kb on + strand, within MPMX20_03469 at 3661.511 kb on - strand, within MPMX20_03469 at 3661.511 kb on - strand, within MPMX20_03469 at 3661.552 kb on + strand, within MPMX20_03469 at 3661.556 kb on + strand, within MPMX20_03469 at 3661.560 kb on - strand, within MPMX20_03469 at 3661.562 kb on + strand, within MPMX20_03469 at 3661.640 kb on - strand, within MPMX20_03469 at 3661.654 kb on + strand, within MPMX20_03469 at 3661.692 kb on - strand, within MPMX20_03469
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 3,658,689 - -1.0 3,658,752 - -2.1 3,658,899 - MPMX20_03467 0.23 +0.3 3,658,913 - MPMX20_03467 0.25 -0.6 3,658,977 + MPMX20_03467 0.32 +0.2 3,658,983 + MPMX20_03467 0.33 -0.4 3,658,985 - MPMX20_03467 0.33 +1.6 3,658,985 - MPMX20_03467 0.33 -0.4 3,658,996 - MPMX20_03467 0.35 +0.7 3,658,999 + MPMX20_03467 0.35 +0.6 3,659,007 - MPMX20_03467 0.36 -0.7 3,659,080 + MPMX20_03467 0.44 +0.1 3,659,088 - MPMX20_03467 0.45 -0.1 3,659,088 - MPMX20_03467 0.45 -0.4 3,659,191 - MPMX20_03467 0.57 +0.9 3,659,220 - MPMX20_03467 0.60 -0.4 3,659,223 - MPMX20_03467 0.61 -0.6 3,659,237 - MPMX20_03467 0.62 -0.4 3,659,319 + MPMX20_03467 0.72 +0.8 3,659,376 + MPMX20_03467 0.78 -0.9 3,659,376 + MPMX20_03467 0.78 +0.8 3,659,386 + MPMX20_03467 0.79 -0.1 3,659,386 + MPMX20_03467 0.79 -0.4 3,659,386 + MPMX20_03467 0.79 +0.5 3,659,386 + MPMX20_03467 0.79 -0.2 3,659,396 + MPMX20_03467 0.80 +0.8 3,659,465 - MPMX20_03467 0.88 -0.2 3,659,478 + MPMX20_03467 0.90 +1.6 3,659,478 + MPMX20_03467 0.90 +1.3 3,659,478 + MPMX20_03467 0.90 -3.0 3,659,486 - -1.5 3,659,486 - -0.9 3,659,486 - -1.1 3,659,561 + +1.1 3,659,561 + -0.3 3,659,569 - -0.4 3,659,659 - -0.6 3,659,755 + MPMX20_03468 0.11 -3.0 3,659,762 + MPMX20_03468 0.12 -3.0 3,659,763 - MPMX20_03468 0.12 -1.2 3,659,803 + MPMX20_03468 0.16 -1.6 3,659,803 + MPMX20_03468 0.16 -2.9 3,659,803 + MPMX20_03468 0.16 -2.2 3,659,811 - MPMX20_03468 0.16 -3.2 3,659,821 - MPMX20_03468 0.17 -3.8 3,659,851 + MPMX20_03468 0.20 -3.4 3,659,895 - MPMX20_03468 0.24 -4.0 3,659,963 + MPMX20_03468 0.30 -3.6 3,660,022 - MPMX20_03468 0.35 -3.7 3,660,043 - MPMX20_03468 0.37 -5.0 3,660,072 - MPMX20_03468 0.40 -2.0 3,660,074 + MPMX20_03468 0.40 -2.6 3,660,084 + MPMX20_03468 0.41 -2.0 3,660,102 + MPMX20_03468 0.42 -3.4 3,660,115 - MPMX20_03468 0.43 -3.6 3,660,119 - MPMX20_03468 0.44 -4.3 3,660,313 - MPMX20_03468 0.61 -4.3 3,660,334 + MPMX20_03468 0.63 -2.8 3,660,432 - MPMX20_03468 0.72 -3.0 3,660,432 - MPMX20_03468 0.72 -2.7 3,660,529 - MPMX20_03468 0.80 -3.1 3,660,666 + -3.4 3,660,666 + -2.5 3,660,674 - -2.8 3,660,696 + -4.2 3,660,704 - -2.2 3,660,704 - -2.0 3,660,704 - -5.4 3,660,731 + -1.7 3,660,756 - +0.2 3,660,756 - +0.5 3,660,864 + -2.5 3,660,869 + MPMX20_03469 0.10 -3.3 3,660,869 + MPMX20_03469 0.10 -3.9 3,660,869 + MPMX20_03469 0.10 -3.0 3,660,877 - MPMX20_03469 0.11 -0.4 3,660,879 + MPMX20_03469 0.11 -3.7 3,660,999 - MPMX20_03469 0.22 -0.0 3,661,053 - MPMX20_03469 0.27 -1.4 3,661,075 + MPMX20_03469 0.30 -3.6 3,661,085 + MPMX20_03469 0.30 -0.8 3,661,101 - MPMX20_03469 0.32 -1.2 3,661,137 - MPMX20_03469 0.35 -0.6 3,661,147 + MPMX20_03469 0.36 -2.2 3,661,155 - MPMX20_03469 0.37 -1.0 3,661,155 - MPMX20_03469 0.37 -1.3 3,661,176 - MPMX20_03469 0.39 -1.0 3,661,181 - MPMX20_03469 0.39 -1.5 3,661,187 + MPMX20_03469 0.40 -2.1 3,661,195 - MPMX20_03469 0.41 -1.1 3,661,292 + MPMX20_03469 0.50 -2.5 3,661,322 + MPMX20_03469 0.53 -2.4 3,661,322 + MPMX20_03469 0.53 +0.8 3,661,418 - MPMX20_03469 0.62 -1.7 3,661,423 - MPMX20_03469 0.62 -2.7 3,661,503 + MPMX20_03469 0.69 -2.1 3,661,511 - MPMX20_03469 0.70 -2.2 3,661,511 - MPMX20_03469 0.70 -1.9 3,661,552 + MPMX20_03469 0.74 -1.9 3,661,556 + MPMX20_03469 0.74 -2.4 3,661,560 - MPMX20_03469 0.75 -0.1 3,661,562 + MPMX20_03469 0.75 -3.1 3,661,640 - MPMX20_03469 0.82 -1.3 3,661,654 + MPMX20_03469 0.84 -2.1 3,661,692 - MPMX20_03469 0.87 -1.6
Or see this region's nucleotide sequence