Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03389 and MPMX20_03390 are separated by 112 nucleotides MPMX20_03390 and MPMX20_03391 are separated by 10 nucleotides MPMX20_03391 and MPMX20_03392 are separated by 13 nucleotides
MPMX20_03389: MPMX20_03389 - GTPase Der, at 3,568,878 to 3,570,350
_03389
MPMX20_03390: MPMX20_03390 - Outer membrane protein assembly factor BamB, at 3,570,463 to 3,571,641
_03390
MPMX20_03391: MPMX20_03391 - hypothetical protein, at 3,571,652 to 3,572,272
_03391
MPMX20_03392: MPMX20_03392 - Histidine--tRNA ligase, at 3,572,286 to 3,573,560
_03392
Position (kb)
3570
3571
3572 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3570.460 kb on - strand at 3570.485 kb on - strand at 3570.543 kb on + strand at 3570.551 kb on - strand at 3570.591 kb on + strand, within MPMX20_03390 at 3570.591 kb on + strand, within MPMX20_03390 at 3570.612 kb on - strand, within MPMX20_03390 at 3570.612 kb on - strand, within MPMX20_03390 at 3570.612 kb on - strand, within MPMX20_03390 at 3570.612 kb on - strand, within MPMX20_03390 at 3570.612 kb on - strand, within MPMX20_03390 at 3570.627 kb on + strand, within MPMX20_03390 at 3570.627 kb on + strand, within MPMX20_03390 at 3570.648 kb on + strand, within MPMX20_03390 at 3570.696 kb on + strand, within MPMX20_03390 at 3570.704 kb on - strand, within MPMX20_03390 at 3570.704 kb on - strand, within MPMX20_03390 at 3570.704 kb on - strand, within MPMX20_03390 at 3570.780 kb on + strand, within MPMX20_03390 at 3570.836 kb on - strand, within MPMX20_03390 at 3571.073 kb on + strand, within MPMX20_03390 at 3571.158 kb on - strand, within MPMX20_03390 at 3571.163 kb on - strand, within MPMX20_03390 at 3571.257 kb on - strand, within MPMX20_03390 at 3571.325 kb on + strand, within MPMX20_03390 at 3571.568 kb on + strand at 3571.576 kb on - strand at 3571.583 kb on - strand at 3571.586 kb on - strand at 3571.601 kb on + strand at 3571.601 kb on + strand at 3571.619 kb on - strand at 3571.696 kb on + strand at 3571.701 kb on + strand at 3571.704 kb on - strand at 3571.715 kb on + strand, within MPMX20_03391 at 3571.715 kb on - strand, within MPMX20_03391 at 3571.766 kb on - strand, within MPMX20_03391 at 3571.925 kb on + strand, within MPMX20_03391 at 3571.940 kb on - strand, within MPMX20_03391 at 3571.953 kb on + strand, within MPMX20_03391 at 3571.993 kb on + strand, within MPMX20_03391 at 3572.249 kb on - strand at 3572.276 kb on + strand at 3572.284 kb on - strand at 3572.284 kb on - strand at 3572.284 kb on - strand at 3572.289 kb on + strand at 3572.297 kb on - strand at 3572.297 kb on - strand at 3572.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 3,570,460 - +0.5 3,570,485 - +1.3 3,570,543 + +0.2 3,570,551 - -1.1 3,570,591 + MPMX20_03390 0.11 -1.3 3,570,591 + MPMX20_03390 0.11 -1.6 3,570,612 - MPMX20_03390 0.13 -0.8 3,570,612 - MPMX20_03390 0.13 -3.1 3,570,612 - MPMX20_03390 0.13 -1.6 3,570,612 - MPMX20_03390 0.13 -1.5 3,570,612 - MPMX20_03390 0.13 -1.8 3,570,627 + MPMX20_03390 0.14 -1.6 3,570,627 + MPMX20_03390 0.14 -1.8 3,570,648 + MPMX20_03390 0.16 -0.6 3,570,696 + MPMX20_03390 0.20 -2.6 3,570,704 - MPMX20_03390 0.20 -1.4 3,570,704 - MPMX20_03390 0.20 -1.7 3,570,704 - MPMX20_03390 0.20 -3.6 3,570,780 + MPMX20_03390 0.27 -1.5 3,570,836 - MPMX20_03390 0.32 -0.4 3,571,073 + MPMX20_03390 0.52 -2.5 3,571,158 - MPMX20_03390 0.59 -2.3 3,571,163 - MPMX20_03390 0.59 -0.8 3,571,257 - MPMX20_03390 0.67 -1.1 3,571,325 + MPMX20_03390 0.73 -0.5 3,571,568 + -0.8 3,571,576 - -2.0 3,571,583 - -1.9 3,571,586 - -1.1 3,571,601 + -1.2 3,571,601 + -1.0 3,571,619 - -3.4 3,571,696 + -3.1 3,571,701 + -2.0 3,571,704 - +1.4 3,571,715 + MPMX20_03391 0.10 -0.9 3,571,715 - MPMX20_03391 0.10 +0.1 3,571,766 - MPMX20_03391 0.18 -0.1 3,571,925 + MPMX20_03391 0.44 -1.8 3,571,940 - MPMX20_03391 0.46 +0.5 3,571,953 + MPMX20_03391 0.48 -0.6 3,571,993 + MPMX20_03391 0.55 +0.1 3,572,249 - -0.0 3,572,276 + -0.7 3,572,284 - +0.5 3,572,284 - -0.1 3,572,284 - +0.4 3,572,289 + +0.5 3,572,297 - +0.3 3,572,297 - -0.8 3,572,297 - +0.3
Or see this region's nucleotide sequence