Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03390

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03389 and MPMX20_03390 are separated by 112 nucleotidesMPMX20_03390 and MPMX20_03391 are separated by 10 nucleotidesMPMX20_03391 and MPMX20_03392 are separated by 13 nucleotides MPMX20_03389: MPMX20_03389 - GTPase Der, at 3,568,878 to 3,570,350 _03389 MPMX20_03390: MPMX20_03390 - Outer membrane protein assembly factor BamB, at 3,570,463 to 3,571,641 _03390 MPMX20_03391: MPMX20_03391 - hypothetical protein, at 3,571,652 to 3,572,272 _03391 MPMX20_03392: MPMX20_03392 - Histidine--tRNA ligase, at 3,572,286 to 3,573,560 _03392 Position (kb) 3570 3571 3572Strain fitness (log2 ratio) -3 -2 -1 0 1at 3570.460 kb on - strandat 3570.485 kb on - strandat 3570.543 kb on + strandat 3570.551 kb on - strandat 3570.591 kb on + strand, within MPMX20_03390at 3570.591 kb on + strand, within MPMX20_03390at 3570.612 kb on - strand, within MPMX20_03390at 3570.612 kb on - strand, within MPMX20_03390at 3570.612 kb on - strand, within MPMX20_03390at 3570.612 kb on - strand, within MPMX20_03390at 3570.612 kb on - strand, within MPMX20_03390at 3570.627 kb on + strand, within MPMX20_03390at 3570.627 kb on + strand, within MPMX20_03390at 3570.648 kb on + strand, within MPMX20_03390at 3570.696 kb on + strand, within MPMX20_03390at 3570.704 kb on - strand, within MPMX20_03390at 3570.704 kb on - strand, within MPMX20_03390at 3570.704 kb on - strand, within MPMX20_03390at 3570.780 kb on + strand, within MPMX20_03390at 3570.836 kb on - strand, within MPMX20_03390at 3571.073 kb on + strand, within MPMX20_03390at 3571.158 kb on - strand, within MPMX20_03390at 3571.163 kb on - strand, within MPMX20_03390at 3571.257 kb on - strand, within MPMX20_03390at 3571.325 kb on + strand, within MPMX20_03390at 3571.568 kb on + strandat 3571.576 kb on - strandat 3571.583 kb on - strandat 3571.586 kb on - strandat 3571.601 kb on + strandat 3571.601 kb on + strandat 3571.619 kb on - strandat 3571.696 kb on + strandat 3571.701 kb on + strandat 3571.704 kb on - strandat 3571.715 kb on + strand, within MPMX20_03391at 3571.715 kb on - strand, within MPMX20_03391at 3571.766 kb on - strand, within MPMX20_03391at 3571.925 kb on + strand, within MPMX20_03391at 3571.940 kb on - strand, within MPMX20_03391at 3571.953 kb on + strand, within MPMX20_03391at 3571.993 kb on + strand, within MPMX20_03391at 3572.249 kb on - strandat 3572.276 kb on + strandat 3572.284 kb on - strandat 3572.284 kb on - strandat 3572.284 kb on - strandat 3572.289 kb on + strandat 3572.297 kb on - strandat 3572.297 kb on - strandat 3572.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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3,570,460 - +0.5
3,570,485 - +1.3
3,570,543 + +0.2
3,570,551 - -1.1
3,570,591 + MPMX20_03390 0.11 -1.3
3,570,591 + MPMX20_03390 0.11 -1.6
3,570,612 - MPMX20_03390 0.13 -0.8
3,570,612 - MPMX20_03390 0.13 -3.1
3,570,612 - MPMX20_03390 0.13 -1.6
3,570,612 - MPMX20_03390 0.13 -1.5
3,570,612 - MPMX20_03390 0.13 -1.8
3,570,627 + MPMX20_03390 0.14 -1.6
3,570,627 + MPMX20_03390 0.14 -1.8
3,570,648 + MPMX20_03390 0.16 -0.6
3,570,696 + MPMX20_03390 0.20 -2.6
3,570,704 - MPMX20_03390 0.20 -1.4
3,570,704 - MPMX20_03390 0.20 -1.7
3,570,704 - MPMX20_03390 0.20 -3.6
3,570,780 + MPMX20_03390 0.27 -1.5
3,570,836 - MPMX20_03390 0.32 -0.4
3,571,073 + MPMX20_03390 0.52 -2.5
3,571,158 - MPMX20_03390 0.59 -2.3
3,571,163 - MPMX20_03390 0.59 -0.8
3,571,257 - MPMX20_03390 0.67 -1.1
3,571,325 + MPMX20_03390 0.73 -0.5
3,571,568 + -0.8
3,571,576 - -2.0
3,571,583 - -1.9
3,571,586 - -1.1
3,571,601 + -1.2
3,571,601 + -1.0
3,571,619 - -3.4
3,571,696 + -3.1
3,571,701 + -2.0
3,571,704 - +1.4
3,571,715 + MPMX20_03391 0.10 -0.9
3,571,715 - MPMX20_03391 0.10 +0.1
3,571,766 - MPMX20_03391 0.18 -0.1
3,571,925 + MPMX20_03391 0.44 -1.8
3,571,940 - MPMX20_03391 0.46 +0.5
3,571,953 + MPMX20_03391 0.48 -0.6
3,571,993 + MPMX20_03391 0.55 +0.1
3,572,249 - -0.0
3,572,276 + -0.7
3,572,284 - +0.5
3,572,284 - -0.1
3,572,284 - +0.4
3,572,289 + +0.5
3,572,297 - +0.3
3,572,297 - -0.8
3,572,297 - +0.3

Or see this region's nucleotide sequence