Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01155 and MPMX20_01156 are separated by 69 nucleotides MPMX20_01156 and MPMX20_01157 are separated by 330 nucleotides
MPMX20_01155: MPMX20_01155 - multidrug efflux RND transporter permease subunit OqxB3, at 1,216,435 to 1,219,587
_01155
MPMX20_01156: MPMX20_01156 - hypothetical protein, at 1,219,657 to 1,220,133
_01156
MPMX20_01157: MPMX20_01157 - hypothetical protein, at 1,220,464 to 1,221,843
_01157
Position (kb)
1219
1220
1221 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1218.667 kb on - strand, within MPMX20_01155 at 1218.684 kb on + strand, within MPMX20_01155 at 1218.702 kb on - strand, within MPMX20_01155 at 1218.711 kb on - strand, within MPMX20_01155 at 1218.728 kb on + strand, within MPMX20_01155 at 1218.736 kb on - strand, within MPMX20_01155 at 1218.738 kb on + strand, within MPMX20_01155 at 1218.738 kb on + strand, within MPMX20_01155 at 1218.781 kb on + strand, within MPMX20_01155 at 1218.801 kb on - strand, within MPMX20_01155 at 1218.954 kb on + strand, within MPMX20_01155 at 1218.964 kb on - strand, within MPMX20_01155 at 1218.966 kb on + strand, within MPMX20_01155 at 1218.989 kb on + strand, within MPMX20_01155 at 1219.041 kb on - strand, within MPMX20_01155 at 1219.041 kb on - strand, within MPMX20_01155 at 1219.062 kb on - strand, within MPMX20_01155 at 1219.067 kb on - strand, within MPMX20_01155 at 1219.163 kb on - strand, within MPMX20_01155 at 1219.191 kb on + strand, within MPMX20_01155 at 1219.236 kb on + strand, within MPMX20_01155 at 1219.252 kb on + strand, within MPMX20_01155 at 1219.258 kb on + strand, within MPMX20_01155 at 1219.299 kb on - strand at 1219.347 kb on - strand at 1219.372 kb on + strand at 1219.436 kb on + strand at 1219.444 kb on - strand at 1219.444 kb on - strand at 1219.475 kb on + strand at 1219.514 kb on - strand at 1219.534 kb on - strand at 1219.534 kb on - strand at 1219.534 kb on - strand at 1219.595 kb on - strand at 1219.595 kb on - strand at 1219.649 kb on + strand at 1219.649 kb on + strand at 1219.649 kb on + strand at 1219.649 kb on + strand at 1219.649 kb on + strand at 1219.651 kb on - strand at 1219.657 kb on - strand at 1219.657 kb on - strand at 1219.657 kb on - strand at 1219.657 kb on - strand at 1219.777 kb on - strand, within MPMX20_01156 at 1219.799 kb on + strand, within MPMX20_01156 at 1219.908 kb on + strand, within MPMX20_01156 at 1219.968 kb on - strand, within MPMX20_01156 at 1220.002 kb on - strand, within MPMX20_01156 at 1220.038 kb on + strand, within MPMX20_01156 at 1220.038 kb on + strand, within MPMX20_01156 at 1220.061 kb on - strand, within MPMX20_01156 at 1220.061 kb on - strand, within MPMX20_01156 at 1220.090 kb on - strand at 1220.097 kb on - strand at 1220.101 kb on + strand at 1220.109 kb on - strand at 1220.140 kb on + strand at 1220.140 kb on + strand at 1220.140 kb on + strand at 1220.140 kb on + strand at 1220.140 kb on + strand at 1220.140 kb on + strand at 1220.140 kb on + strand at 1220.140 kb on + strand at 1220.145 kb on + strand at 1220.175 kb on + strand at 1220.175 kb on + strand at 1220.175 kb on + strand at 1220.175 kb on + strand at 1220.183 kb on - strand at 1220.240 kb on + strand at 1220.240 kb on + strand at 1220.240 kb on + strand at 1220.240 kb on + strand at 1220.243 kb on - strand at 1220.245 kb on + strand at 1220.245 kb on + strand at 1220.248 kb on - strand at 1220.248 kb on - strand at 1220.253 kb on - strand at 1220.277 kb on + strand at 1220.287 kb on - strand at 1220.289 kb on + strand at 1220.289 kb on + strand at 1220.289 kb on + strand at 1220.289 kb on + strand at 1220.289 kb on + strand at 1220.289 kb on + strand at 1220.289 kb on + strand at 1220.289 kb on + strand at 1220.289 kb on + strand at 1220.297 kb on - strand at 1220.297 kb on - strand at 1220.297 kb on - strand at 1220.297 kb on - strand at 1220.297 kb on - strand at 1220.298 kb on - strand at 1220.301 kb on + strand at 1220.301 kb on + strand at 1220.301 kb on + strand at 1220.301 kb on + strand at 1220.309 kb on - strand at 1220.309 kb on - strand at 1220.309 kb on - strand at 1220.309 kb on - strand at 1220.418 kb on + strand at 1220.418 kb on + strand at 1220.418 kb on + strand at 1220.423 kb on + strand at 1220.426 kb on - strand at 1220.444 kb on + strand at 1220.444 kb on + strand at 1220.444 kb on + strand at 1220.449 kb on + strand at 1220.449 kb on + strand at 1220.449 kb on + strand at 1220.452 kb on - strand at 1220.457 kb on - strand at 1220.457 kb on - strand at 1220.457 kb on - strand at 1220.457 kb on - strand at 1220.457 kb on - strand at 1220.467 kb on - strand at 1220.487 kb on + strand at 1220.495 kb on - strand at 1220.525 kb on + strand at 1220.577 kb on + strand at 1220.585 kb on - strand at 1220.585 kb on - strand at 1220.587 kb on + strand at 1220.587 kb on + strand at 1220.587 kb on + strand at 1220.595 kb on - strand at 1220.595 kb on - strand at 1220.618 kb on - strand, within MPMX20_01157 at 1220.703 kb on + strand, within MPMX20_01157 at 1220.711 kb on - strand, within MPMX20_01157 at 1220.713 kb on + strand, within MPMX20_01157 at 1220.721 kb on - strand, within MPMX20_01157 at 1220.804 kb on - strand, within MPMX20_01157 at 1220.805 kb on - strand, within MPMX20_01157 at 1220.823 kb on - strand, within MPMX20_01157 at 1220.848 kb on + strand, within MPMX20_01157 at 1220.848 kb on + strand, within MPMX20_01157 at 1220.856 kb on - strand, within MPMX20_01157 at 1220.856 kb on - strand, within MPMX20_01157 at 1220.871 kb on + strand, within MPMX20_01157 at 1220.879 kb on - strand, within MPMX20_01157 at 1220.973 kb on + strand, within MPMX20_01157 at 1220.981 kb on - strand, within MPMX20_01157 at 1220.988 kb on - strand, within MPMX20_01157 at 1221.028 kb on - strand, within MPMX20_01157 at 1221.079 kb on + strand, within MPMX20_01157 at 1221.080 kb on + strand, within MPMX20_01157 at 1221.103 kb on + strand, within MPMX20_01157
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 1,218,667 - MPMX20_01155 0.71 -0.8 1,218,684 + MPMX20_01155 0.71 -0.6 1,218,702 - MPMX20_01155 0.72 -0.1 1,218,711 - MPMX20_01155 0.72 +1.6 1,218,728 + MPMX20_01155 0.73 +0.5 1,218,736 - MPMX20_01155 0.73 +0.0 1,218,738 + MPMX20_01155 0.73 -0.4 1,218,738 + MPMX20_01155 0.73 -1.0 1,218,781 + MPMX20_01155 0.74 -0.3 1,218,801 - MPMX20_01155 0.75 +0.3 1,218,954 + MPMX20_01155 0.80 -0.1 1,218,964 - MPMX20_01155 0.80 -0.3 1,218,966 + MPMX20_01155 0.80 -0.1 1,218,989 + MPMX20_01155 0.81 -0.3 1,219,041 - MPMX20_01155 0.83 -1.3 1,219,041 - MPMX20_01155 0.83 -0.2 1,219,062 - MPMX20_01155 0.83 -1.3 1,219,067 - MPMX20_01155 0.83 -0.1 1,219,163 - MPMX20_01155 0.87 -0.5 1,219,191 + MPMX20_01155 0.87 -0.1 1,219,236 + MPMX20_01155 0.89 +0.6 1,219,252 + MPMX20_01155 0.89 -0.1 1,219,258 + MPMX20_01155 0.90 -0.8 1,219,299 - +0.8 1,219,347 - -0.2 1,219,372 + +0.9 1,219,436 + -0.0 1,219,444 - +0.3 1,219,444 - -1.0 1,219,475 + -0.5 1,219,514 - -0.3 1,219,534 - -1.0 1,219,534 - -0.0 1,219,534 - -0.7 1,219,595 - +0.3 1,219,595 - -1.0 1,219,649 + -0.2 1,219,649 + -0.3 1,219,649 + -0.1 1,219,649 + -0.6 1,219,649 + -0.2 1,219,651 - -1.1 1,219,657 - -0.7 1,219,657 - +0.3 1,219,657 - +0.4 1,219,657 - +1.9 1,219,777 - MPMX20_01156 0.25 -0.5 1,219,799 + MPMX20_01156 0.30 -1.1 1,219,908 + MPMX20_01156 0.53 -1.7 1,219,968 - MPMX20_01156 0.65 -3.0 1,220,002 - MPMX20_01156 0.72 -4.0 1,220,038 + MPMX20_01156 0.80 -1.3 1,220,038 + MPMX20_01156 0.80 -2.4 1,220,061 - MPMX20_01156 0.85 -3.7 1,220,061 - MPMX20_01156 0.85 -2.5 1,220,090 - -2.0 1,220,097 - -2.4 1,220,101 + -2.3 1,220,109 - -3.0 1,220,140 + -1.8 1,220,140 + -3.1 1,220,140 + -1.0 1,220,140 + -1.0 1,220,140 + -3.1 1,220,140 + -1.0 1,220,140 + -1.2 1,220,140 + -2.7 1,220,145 + -1.4 1,220,175 + -0.4 1,220,175 + -3.0 1,220,175 + -1.2 1,220,175 + -1.0 1,220,183 - -1.1 1,220,240 + +1.9 1,220,240 + +0.9 1,220,240 + +0.8 1,220,240 + +0.2 1,220,243 - +0.0 1,220,245 + -1.2 1,220,245 + +1.2 1,220,248 - +1.4 1,220,248 - -0.1 1,220,253 - -0.5 1,220,277 + +0.2 1,220,287 - -0.4 1,220,289 + -0.4 1,220,289 + -0.5 1,220,289 + -1.6 1,220,289 + -0.9 1,220,289 + +0.1 1,220,289 + -1.3 1,220,289 + -0.1 1,220,289 + +0.3 1,220,289 + +0.4 1,220,297 - +0.1 1,220,297 - -0.8 1,220,297 - -0.1 1,220,297 - -0.7 1,220,297 - -0.3 1,220,298 - -0.2 1,220,301 + -0.6 1,220,301 + +0.7 1,220,301 + +1.6 1,220,301 + -0.7 1,220,309 - -0.7 1,220,309 - -1.0 1,220,309 - -0.6 1,220,309 - -0.0 1,220,418 + +0.3 1,220,418 + +0.4 1,220,418 + +0.2 1,220,423 + -0.6 1,220,426 - -0.6 1,220,444 + -0.4 1,220,444 + +0.8 1,220,444 + -0.6 1,220,449 + +0.7 1,220,449 + -0.3 1,220,449 + -0.5 1,220,452 - -0.1 1,220,457 - +0.3 1,220,457 - -1.2 1,220,457 - +0.3 1,220,457 - -0.1 1,220,457 - -0.5 1,220,467 - +0.4 1,220,487 + +0.5 1,220,495 - -1.3 1,220,525 + +0.1 1,220,577 + -0.8 1,220,585 - +0.1 1,220,585 - +0.5 1,220,587 + +0.1 1,220,587 + -1.6 1,220,587 + -0.0 1,220,595 - +0.1 1,220,595 - -0.5 1,220,618 - MPMX20_01157 0.11 +0.1 1,220,703 + MPMX20_01157 0.17 +0.6 1,220,711 - MPMX20_01157 0.18 +0.6 1,220,713 + MPMX20_01157 0.18 +0.1 1,220,721 - MPMX20_01157 0.19 +0.2 1,220,804 - MPMX20_01157 0.25 -0.6 1,220,805 - MPMX20_01157 0.25 +0.2 1,220,823 - MPMX20_01157 0.26 -0.9 1,220,848 + MPMX20_01157 0.28 +1.9 1,220,848 + MPMX20_01157 0.28 -0.1 1,220,856 - MPMX20_01157 0.28 +1.9 1,220,856 - MPMX20_01157 0.28 -0.7 1,220,871 + MPMX20_01157 0.29 +0.3 1,220,879 - MPMX20_01157 0.30 -0.3 1,220,973 + MPMX20_01157 0.37 -0.4 1,220,981 - MPMX20_01157 0.37 +1.6 1,220,988 - MPMX20_01157 0.38 -1.4 1,221,028 - MPMX20_01157 0.41 -0.2 1,221,079 + MPMX20_01157 0.45 -0.4 1,221,080 + MPMX20_01157 0.45 +0.4 1,221,103 + MPMX20_01157 0.46 -1.4
Or see this region's nucleotide sequence