Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01834

Experiment: Parabanic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01832 and MPMX20_01833 are separated by 151 nucleotidesMPMX20_01833 and MPMX20_01834 are separated by 30 nucleotidesMPMX20_01834 and MPMX20_01835 are separated by 99 nucleotidesMPMX20_01835 and MPMX20_01836 overlap by 17 nucleotides MPMX20_01832: MPMX20_01832 - hypothetical protein, at 1,926,776 to 1,927,120 _01832 MPMX20_01833: MPMX20_01833 - CTP synthase, at 1,927,272 to 1,927,979 _01833 MPMX20_01834: MPMX20_01834 - 2-nitroimidazole transporter, at 1,928,010 to 1,929,197 _01834 MPMX20_01835: MPMX20_01835 - HTH-type transcriptional regulator NimR, at 1,929,297 to 1,930,088 _01835 MPMX20_01836: MPMX20_01836 - hypothetical protein, at 1,930,072 to 1,930,518 _01836 Position (kb) 1928 1929 1930Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1927.074 kb on - strand, within MPMX20_01832at 1927.083 kb on + strand, within MPMX20_01832at 1927.104 kb on + strandat 1927.104 kb on + strandat 1927.112 kb on - strandat 1927.112 kb on - strandat 1927.171 kb on + strandat 1927.194 kb on - strandat 1927.213 kb on + strandat 1927.220 kb on + strandat 1927.230 kb on + strandat 1927.263 kb on - strandat 1927.280 kb on + strandat 1927.327 kb on + strandat 1927.391 kb on - strand, within MPMX20_01833at 1927.401 kb on + strand, within MPMX20_01833at 1927.401 kb on + strand, within MPMX20_01833at 1927.425 kb on + strand, within MPMX20_01833at 1927.433 kb on - strand, within MPMX20_01833at 1927.435 kb on + strand, within MPMX20_01833at 1927.530 kb on + strand, within MPMX20_01833at 1927.538 kb on - strand, within MPMX20_01833at 1927.583 kb on + strand, within MPMX20_01833at 1927.583 kb on + strand, within MPMX20_01833at 1927.602 kb on - strand, within MPMX20_01833at 1927.615 kb on - strand, within MPMX20_01833at 1927.648 kb on + strand, within MPMX20_01833at 1927.656 kb on - strand, within MPMX20_01833at 1927.673 kb on - strand, within MPMX20_01833at 1927.673 kb on - strand, within MPMX20_01833at 1927.673 kb on - strand, within MPMX20_01833at 1927.707 kb on - strand, within MPMX20_01833at 1927.733 kb on + strand, within MPMX20_01833at 1927.736 kb on - strand, within MPMX20_01833at 1927.736 kb on - strand, within MPMX20_01833at 1927.803 kb on + strand, within MPMX20_01833at 1927.803 kb on + strand, within MPMX20_01833at 1927.811 kb on - strand, within MPMX20_01833at 1927.813 kb on - strand, within MPMX20_01833at 1927.905 kb on - strand, within MPMX20_01833at 1927.907 kb on + strand, within MPMX20_01833at 1927.959 kb on - strandat 1928.025 kb on - strandat 1928.073 kb on + strandat 1928.085 kb on + strandat 1928.085 kb on + strandat 1928.152 kb on - strand, within MPMX20_01834at 1928.225 kb on + strand, within MPMX20_01834at 1928.240 kb on + strand, within MPMX20_01834at 1928.240 kb on + strand, within MPMX20_01834at 1928.248 kb on - strand, within MPMX20_01834at 1928.248 kb on - strand, within MPMX20_01834at 1928.248 kb on - strand, within MPMX20_01834at 1928.252 kb on + strand, within MPMX20_01834at 1928.260 kb on - strand, within MPMX20_01834at 1928.313 kb on + strand, within MPMX20_01834at 1928.345 kb on + strand, within MPMX20_01834at 1928.422 kb on + strand, within MPMX20_01834at 1928.454 kb on + strand, within MPMX20_01834at 1928.457 kb on - strand, within MPMX20_01834at 1928.471 kb on + strand, within MPMX20_01834at 1928.471 kb on + strand, within MPMX20_01834at 1928.605 kb on - strand, within MPMX20_01834at 1928.639 kb on + strand, within MPMX20_01834at 1928.652 kb on - strand, within MPMX20_01834at 1928.657 kb on - strand, within MPMX20_01834at 1928.720 kb on - strand, within MPMX20_01834at 1928.742 kb on + strand, within MPMX20_01834at 1928.742 kb on + strand, within MPMX20_01834at 1928.742 kb on + strand, within MPMX20_01834at 1928.750 kb on - strand, within MPMX20_01834at 1928.830 kb on + strand, within MPMX20_01834at 1928.839 kb on + strand, within MPMX20_01834at 1928.849 kb on + strand, within MPMX20_01834at 1928.857 kb on - strand, within MPMX20_01834at 1928.870 kb on + strand, within MPMX20_01834at 1928.878 kb on - strand, within MPMX20_01834at 1928.896 kb on + strand, within MPMX20_01834at 1928.923 kb on - strand, within MPMX20_01834at 1928.952 kb on - strand, within MPMX20_01834at 1928.986 kb on - strand, within MPMX20_01834at 1929.031 kb on + strand, within MPMX20_01834at 1929.045 kb on + strand, within MPMX20_01834at 1929.046 kb on + strand, within MPMX20_01834at 1929.053 kb on - strand, within MPMX20_01834at 1929.065 kb on - strand, within MPMX20_01834at 1929.090 kb on + strandat 1929.095 kb on + strandat 1929.122 kb on + strandat 1929.122 kb on + strandat 1929.156 kb on - strandat 1929.209 kb on - strandat 1929.209 kb on - strandat 1929.209 kb on - strandat 1929.209 kb on - strandat 1929.248 kb on + strandat 1929.304 kb on + strandat 1929.434 kb on + strand, within MPMX20_01835at 1929.465 kb on + strand, within MPMX20_01835at 1929.541 kb on + strand, within MPMX20_01835at 1929.612 kb on - strand, within MPMX20_01835at 1929.693 kb on - strand, within MPMX20_01835at 1929.747 kb on - strand, within MPMX20_01835at 1929.799 kb on - strand, within MPMX20_01835at 1929.842 kb on + strand, within MPMX20_01835at 1929.962 kb on + strand, within MPMX20_01835at 1929.998 kb on - strand, within MPMX20_01835at 1930.041 kb on - strandat 1930.070 kb on + strandat 1930.098 kb on - strandat 1930.101 kb on + strandat 1930.143 kb on + strand, within MPMX20_01836at 1930.196 kb on + strand, within MPMX20_01836

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (C)
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1,927,074 - MPMX20_01832 0.86 -0.5
1,927,083 + MPMX20_01832 0.89 +1.8
1,927,104 + -0.1
1,927,104 + +0.1
1,927,112 - -0.9
1,927,112 - -2.3
1,927,171 + -3.5
1,927,194 - +1.8
1,927,213 + -0.1
1,927,220 + -0.7
1,927,230 + -3.9
1,927,263 - +0.2
1,927,280 + -0.3
1,927,327 + -1.0
1,927,391 - MPMX20_01833 0.17 -2.7
1,927,401 + MPMX20_01833 0.18 -2.9
1,927,401 + MPMX20_01833 0.18 -0.2
1,927,425 + MPMX20_01833 0.22 -1.4
1,927,433 - MPMX20_01833 0.23 -0.2
1,927,435 + MPMX20_01833 0.23 +0.4
1,927,530 + MPMX20_01833 0.36 +0.7
1,927,538 - MPMX20_01833 0.38 -0.5
1,927,583 + MPMX20_01833 0.44 -0.4
1,927,583 + MPMX20_01833 0.44 -2.7
1,927,602 - MPMX20_01833 0.47 +0.1
1,927,615 - MPMX20_01833 0.48 -0.4
1,927,648 + MPMX20_01833 0.53 +2.0
1,927,656 - MPMX20_01833 0.54 +0.5
1,927,673 - MPMX20_01833 0.57 +1.9
1,927,673 - MPMX20_01833 0.57 +1.4
1,927,673 - MPMX20_01833 0.57 +2.1
1,927,707 - MPMX20_01833 0.61 +0.5
1,927,733 + MPMX20_01833 0.65 +2.2
1,927,736 - MPMX20_01833 0.66 -2.2
1,927,736 - MPMX20_01833 0.66 -1.5
1,927,803 + MPMX20_01833 0.75 +0.8
1,927,803 + MPMX20_01833 0.75 +2.5
1,927,811 - MPMX20_01833 0.76 -2.6
1,927,813 - MPMX20_01833 0.76 +2.4
1,927,905 - MPMX20_01833 0.89 -2.3
1,927,907 + MPMX20_01833 0.90 +0.5
1,927,959 - -2.7
1,928,025 - +0.4
1,928,073 + -4.0
1,928,085 + -2.4
1,928,085 + +0.3
1,928,152 - MPMX20_01834 0.12 +4.0
1,928,225 + MPMX20_01834 0.18 +1.9
1,928,240 + MPMX20_01834 0.19 +1.1
1,928,240 + MPMX20_01834 0.19 -2.3
1,928,248 - MPMX20_01834 0.20 +1.1
1,928,248 - MPMX20_01834 0.20 +1.3
1,928,248 - MPMX20_01834 0.20 -1.2
1,928,252 + MPMX20_01834 0.20 +0.3
1,928,260 - MPMX20_01834 0.21 -2.3
1,928,313 + MPMX20_01834 0.26 -2.9
1,928,345 + MPMX20_01834 0.28 +0.3
1,928,422 + MPMX20_01834 0.35 +1.3
1,928,454 + MPMX20_01834 0.37 -1.5
1,928,457 - MPMX20_01834 0.38 -0.7
1,928,471 + MPMX20_01834 0.39 +1.6
1,928,471 + MPMX20_01834 0.39 +3.0
1,928,605 - MPMX20_01834 0.50 +1.5
1,928,639 + MPMX20_01834 0.53 +0.9
1,928,652 - MPMX20_01834 0.54 -0.2
1,928,657 - MPMX20_01834 0.54 +0.4
1,928,720 - MPMX20_01834 0.60 -2.9
1,928,742 + MPMX20_01834 0.62 -0.9
1,928,742 + MPMX20_01834 0.62 +0.2
1,928,742 + MPMX20_01834 0.62 -3.0
1,928,750 - MPMX20_01834 0.62 +0.6
1,928,830 + MPMX20_01834 0.69 +0.6
1,928,839 + MPMX20_01834 0.70 +1.0
1,928,849 + MPMX20_01834 0.71 -0.1
1,928,857 - MPMX20_01834 0.71 -4.0
1,928,870 + MPMX20_01834 0.72 -0.5
1,928,878 - MPMX20_01834 0.73 +1.4
1,928,896 + MPMX20_01834 0.75 -1.5
1,928,923 - MPMX20_01834 0.77 +0.5
1,928,952 - MPMX20_01834 0.79 -0.3
1,928,986 - MPMX20_01834 0.82 -0.5
1,929,031 + MPMX20_01834 0.86 +1.3
1,929,045 + MPMX20_01834 0.87 -3.6
1,929,046 + MPMX20_01834 0.87 +0.1
1,929,053 - MPMX20_01834 0.88 -0.9
1,929,065 - MPMX20_01834 0.89 -0.1
1,929,090 + +1.7
1,929,095 + +2.7
1,929,122 + +1.7
1,929,122 + +0.8
1,929,156 - +0.4
1,929,209 - +1.8
1,929,209 - +0.1
1,929,209 - +0.1
1,929,209 - -0.3
1,929,248 + +1.7
1,929,304 + -1.3
1,929,434 + MPMX20_01835 0.17 +1.1
1,929,465 + MPMX20_01835 0.21 -2.5
1,929,541 + MPMX20_01835 0.31 +1.3
1,929,612 - MPMX20_01835 0.40 -1.2
1,929,693 - MPMX20_01835 0.50 +0.6
1,929,747 - MPMX20_01835 0.57 -2.3
1,929,799 - MPMX20_01835 0.63 -1.9
1,929,842 + MPMX20_01835 0.69 +1.1
1,929,962 + MPMX20_01835 0.84 -3.9
1,929,998 - MPMX20_01835 0.89 -1.7
1,930,041 - +0.8
1,930,070 + +0.3
1,930,098 - -0.3
1,930,101 + +0.6
1,930,143 + MPMX20_01836 0.16 -2.7
1,930,196 + MPMX20_01836 0.28 -1.1

Or see this region's nucleotide sequence