Experiment: Parabanic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01832 and MPMX20_01833 are separated by 151 nucleotides MPMX20_01833 and MPMX20_01834 are separated by 30 nucleotides MPMX20_01834 and MPMX20_01835 are separated by 99 nucleotides MPMX20_01835 and MPMX20_01836 overlap by 17 nucleotides
MPMX20_01832: MPMX20_01832 - hypothetical protein, at 1,926,776 to 1,927,120
_01832
MPMX20_01833: MPMX20_01833 - CTP synthase, at 1,927,272 to 1,927,979
_01833
MPMX20_01834: MPMX20_01834 - 2-nitroimidazole transporter, at 1,928,010 to 1,929,197
_01834
MPMX20_01835: MPMX20_01835 - HTH-type transcriptional regulator NimR, at 1,929,297 to 1,930,088
_01835
MPMX20_01836: MPMX20_01836 - hypothetical protein, at 1,930,072 to 1,930,518
_01836
Position (kb)
1928
1929
1930 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1927.074 kb on - strand, within MPMX20_01832 at 1927.083 kb on + strand, within MPMX20_01832 at 1927.104 kb on + strand at 1927.104 kb on + strand at 1927.112 kb on - strand at 1927.112 kb on - strand at 1927.171 kb on + strand at 1927.194 kb on - strand at 1927.213 kb on + strand at 1927.220 kb on + strand at 1927.230 kb on + strand at 1927.263 kb on - strand at 1927.280 kb on + strand at 1927.327 kb on + strand at 1927.391 kb on - strand, within MPMX20_01833 at 1927.401 kb on + strand, within MPMX20_01833 at 1927.401 kb on + strand, within MPMX20_01833 at 1927.425 kb on + strand, within MPMX20_01833 at 1927.433 kb on - strand, within MPMX20_01833 at 1927.435 kb on + strand, within MPMX20_01833 at 1927.530 kb on + strand, within MPMX20_01833 at 1927.538 kb on - strand, within MPMX20_01833 at 1927.583 kb on + strand, within MPMX20_01833 at 1927.583 kb on + strand, within MPMX20_01833 at 1927.602 kb on - strand, within MPMX20_01833 at 1927.615 kb on - strand, within MPMX20_01833 at 1927.648 kb on + strand, within MPMX20_01833 at 1927.656 kb on - strand, within MPMX20_01833 at 1927.673 kb on - strand, within MPMX20_01833 at 1927.673 kb on - strand, within MPMX20_01833 at 1927.673 kb on - strand, within MPMX20_01833 at 1927.707 kb on - strand, within MPMX20_01833 at 1927.733 kb on + strand, within MPMX20_01833 at 1927.736 kb on - strand, within MPMX20_01833 at 1927.736 kb on - strand, within MPMX20_01833 at 1927.803 kb on + strand, within MPMX20_01833 at 1927.803 kb on + strand, within MPMX20_01833 at 1927.811 kb on - strand, within MPMX20_01833 at 1927.813 kb on - strand, within MPMX20_01833 at 1927.905 kb on - strand, within MPMX20_01833 at 1927.907 kb on + strand, within MPMX20_01833 at 1927.959 kb on - strand at 1928.025 kb on - strand at 1928.073 kb on + strand at 1928.085 kb on + strand at 1928.085 kb on + strand at 1928.152 kb on - strand, within MPMX20_01834 at 1928.225 kb on + strand, within MPMX20_01834 at 1928.240 kb on + strand, within MPMX20_01834 at 1928.240 kb on + strand, within MPMX20_01834 at 1928.248 kb on - strand, within MPMX20_01834 at 1928.248 kb on - strand, within MPMX20_01834 at 1928.248 kb on - strand, within MPMX20_01834 at 1928.252 kb on + strand, within MPMX20_01834 at 1928.260 kb on - strand, within MPMX20_01834 at 1928.313 kb on + strand, within MPMX20_01834 at 1928.345 kb on + strand, within MPMX20_01834 at 1928.422 kb on + strand, within MPMX20_01834 at 1928.454 kb on + strand, within MPMX20_01834 at 1928.457 kb on - strand, within MPMX20_01834 at 1928.471 kb on + strand, within MPMX20_01834 at 1928.471 kb on + strand, within MPMX20_01834 at 1928.605 kb on - strand, within MPMX20_01834 at 1928.639 kb on + strand, within MPMX20_01834 at 1928.652 kb on - strand, within MPMX20_01834 at 1928.657 kb on - strand, within MPMX20_01834 at 1928.720 kb on - strand, within MPMX20_01834 at 1928.742 kb on + strand, within MPMX20_01834 at 1928.742 kb on + strand, within MPMX20_01834 at 1928.742 kb on + strand, within MPMX20_01834 at 1928.750 kb on - strand, within MPMX20_01834 at 1928.830 kb on + strand, within MPMX20_01834 at 1928.839 kb on + strand, within MPMX20_01834 at 1928.849 kb on + strand, within MPMX20_01834 at 1928.857 kb on - strand, within MPMX20_01834 at 1928.870 kb on + strand, within MPMX20_01834 at 1928.878 kb on - strand, within MPMX20_01834 at 1928.896 kb on + strand, within MPMX20_01834 at 1928.923 kb on - strand, within MPMX20_01834 at 1928.952 kb on - strand, within MPMX20_01834 at 1928.986 kb on - strand, within MPMX20_01834 at 1929.031 kb on + strand, within MPMX20_01834 at 1929.045 kb on + strand, within MPMX20_01834 at 1929.046 kb on + strand, within MPMX20_01834 at 1929.053 kb on - strand, within MPMX20_01834 at 1929.065 kb on - strand, within MPMX20_01834 at 1929.090 kb on + strand at 1929.095 kb on + strand at 1929.122 kb on + strand at 1929.122 kb on + strand at 1929.156 kb on - strand at 1929.209 kb on - strand at 1929.209 kb on - strand at 1929.209 kb on - strand at 1929.209 kb on - strand at 1929.248 kb on + strand at 1929.304 kb on + strand at 1929.434 kb on + strand, within MPMX20_01835 at 1929.465 kb on + strand, within MPMX20_01835 at 1929.541 kb on + strand, within MPMX20_01835 at 1929.612 kb on - strand, within MPMX20_01835 at 1929.693 kb on - strand, within MPMX20_01835 at 1929.747 kb on - strand, within MPMX20_01835 at 1929.799 kb on - strand, within MPMX20_01835 at 1929.842 kb on + strand, within MPMX20_01835 at 1929.962 kb on + strand, within MPMX20_01835 at 1929.998 kb on - strand, within MPMX20_01835 at 1930.041 kb on - strand at 1930.070 kb on + strand at 1930.098 kb on - strand at 1930.101 kb on + strand at 1930.143 kb on + strand, within MPMX20_01836 at 1930.196 kb on + strand, within MPMX20_01836
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (C) remove 1,927,074 - MPMX20_01832 0.86 -0.5 1,927,083 + MPMX20_01832 0.89 +1.8 1,927,104 + -0.1 1,927,104 + +0.1 1,927,112 - -0.9 1,927,112 - -2.3 1,927,171 + -3.5 1,927,194 - +1.8 1,927,213 + -0.1 1,927,220 + -0.7 1,927,230 + -3.9 1,927,263 - +0.2 1,927,280 + -0.3 1,927,327 + -1.0 1,927,391 - MPMX20_01833 0.17 -2.7 1,927,401 + MPMX20_01833 0.18 -2.9 1,927,401 + MPMX20_01833 0.18 -0.2 1,927,425 + MPMX20_01833 0.22 -1.4 1,927,433 - MPMX20_01833 0.23 -0.2 1,927,435 + MPMX20_01833 0.23 +0.4 1,927,530 + MPMX20_01833 0.36 +0.7 1,927,538 - MPMX20_01833 0.38 -0.5 1,927,583 + MPMX20_01833 0.44 -0.4 1,927,583 + MPMX20_01833 0.44 -2.7 1,927,602 - MPMX20_01833 0.47 +0.1 1,927,615 - MPMX20_01833 0.48 -0.4 1,927,648 + MPMX20_01833 0.53 +2.0 1,927,656 - MPMX20_01833 0.54 +0.5 1,927,673 - MPMX20_01833 0.57 +1.9 1,927,673 - MPMX20_01833 0.57 +1.4 1,927,673 - MPMX20_01833 0.57 +2.1 1,927,707 - MPMX20_01833 0.61 +0.5 1,927,733 + MPMX20_01833 0.65 +2.2 1,927,736 - MPMX20_01833 0.66 -2.2 1,927,736 - MPMX20_01833 0.66 -1.5 1,927,803 + MPMX20_01833 0.75 +0.8 1,927,803 + MPMX20_01833 0.75 +2.5 1,927,811 - MPMX20_01833 0.76 -2.6 1,927,813 - MPMX20_01833 0.76 +2.4 1,927,905 - MPMX20_01833 0.89 -2.3 1,927,907 + MPMX20_01833 0.90 +0.5 1,927,959 - -2.7 1,928,025 - +0.4 1,928,073 + -4.0 1,928,085 + -2.4 1,928,085 + +0.3 1,928,152 - MPMX20_01834 0.12 +4.0 1,928,225 + MPMX20_01834 0.18 +1.9 1,928,240 + MPMX20_01834 0.19 +1.1 1,928,240 + MPMX20_01834 0.19 -2.3 1,928,248 - MPMX20_01834 0.20 +1.1 1,928,248 - MPMX20_01834 0.20 +1.3 1,928,248 - MPMX20_01834 0.20 -1.2 1,928,252 + MPMX20_01834 0.20 +0.3 1,928,260 - MPMX20_01834 0.21 -2.3 1,928,313 + MPMX20_01834 0.26 -2.9 1,928,345 + MPMX20_01834 0.28 +0.3 1,928,422 + MPMX20_01834 0.35 +1.3 1,928,454 + MPMX20_01834 0.37 -1.5 1,928,457 - MPMX20_01834 0.38 -0.7 1,928,471 + MPMX20_01834 0.39 +1.6 1,928,471 + MPMX20_01834 0.39 +3.0 1,928,605 - MPMX20_01834 0.50 +1.5 1,928,639 + MPMX20_01834 0.53 +0.9 1,928,652 - MPMX20_01834 0.54 -0.2 1,928,657 - MPMX20_01834 0.54 +0.4 1,928,720 - MPMX20_01834 0.60 -2.9 1,928,742 + MPMX20_01834 0.62 -0.9 1,928,742 + MPMX20_01834 0.62 +0.2 1,928,742 + MPMX20_01834 0.62 -3.0 1,928,750 - MPMX20_01834 0.62 +0.6 1,928,830 + MPMX20_01834 0.69 +0.6 1,928,839 + MPMX20_01834 0.70 +1.0 1,928,849 + MPMX20_01834 0.71 -0.1 1,928,857 - MPMX20_01834 0.71 -4.0 1,928,870 + MPMX20_01834 0.72 -0.5 1,928,878 - MPMX20_01834 0.73 +1.4 1,928,896 + MPMX20_01834 0.75 -1.5 1,928,923 - MPMX20_01834 0.77 +0.5 1,928,952 - MPMX20_01834 0.79 -0.3 1,928,986 - MPMX20_01834 0.82 -0.5 1,929,031 + MPMX20_01834 0.86 +1.3 1,929,045 + MPMX20_01834 0.87 -3.6 1,929,046 + MPMX20_01834 0.87 +0.1 1,929,053 - MPMX20_01834 0.88 -0.9 1,929,065 - MPMX20_01834 0.89 -0.1 1,929,090 + +1.7 1,929,095 + +2.7 1,929,122 + +1.7 1,929,122 + +0.8 1,929,156 - +0.4 1,929,209 - +1.8 1,929,209 - +0.1 1,929,209 - +0.1 1,929,209 - -0.3 1,929,248 + +1.7 1,929,304 + -1.3 1,929,434 + MPMX20_01835 0.17 +1.1 1,929,465 + MPMX20_01835 0.21 -2.5 1,929,541 + MPMX20_01835 0.31 +1.3 1,929,612 - MPMX20_01835 0.40 -1.2 1,929,693 - MPMX20_01835 0.50 +0.6 1,929,747 - MPMX20_01835 0.57 -2.3 1,929,799 - MPMX20_01835 0.63 -1.9 1,929,842 + MPMX20_01835 0.69 +1.1 1,929,962 + MPMX20_01835 0.84 -3.9 1,929,998 - MPMX20_01835 0.89 -1.7 1,930,041 - +0.8 1,930,070 + +0.3 1,930,098 - -0.3 1,930,101 + +0.6 1,930,143 + MPMX20_01836 0.16 -2.7 1,930,196 + MPMX20_01836 0.28 -1.1
Or see this region's nucleotide sequence