Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01377

Experiment: L-Citrulline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01371 and MPMX20_01372 are separated by 161 nucleotidesMPMX20_01372 and MPMX20_01373 are separated by 27 nucleotidesMPMX20_01373 and MPMX20_01374 are separated by 4 nucleotidesMPMX20_01374 and MPMX20_01375 are separated by 139 nucleotidesMPMX20_01375 and MPMX20_01376 are separated by 31 nucleotidesMPMX20_01376 and MPMX20_01377 are separated by 235 nucleotidesMPMX20_01377 and MPMX20_01378 are separated by 22 nucleotidesMPMX20_01378 and MPMX20_01379 overlap by 4 nucleotides MPMX20_01371: MPMX20_01371 - Cell division coordinator CpoB, at 1,437,732 to 1,438,526 _01371 MPMX20_01372: MPMX20_01372 - tRNA-Lys, at 1,438,688 to 1,438,763 _01372 MPMX20_01373: MPMX20_01373 - tRNA-Val, at 1,438,791 to 1,438,866 _01373 MPMX20_01374: MPMX20_01374 - tRNA-Lys, at 1,438,871 to 1,438,946 _01374 MPMX20_01375: MPMX20_01375 - tRNA-Lys, at 1,439,086 to 1,439,161 _01375 MPMX20_01376: MPMX20_01376 - tRNA-Lys, at 1,439,193 to 1,439,268 _01376 MPMX20_01377: MPMX20_01377 - Quinolinate synthase A, at 1,439,504 to 1,440,547 _01377 MPMX20_01378: MPMX20_01378 - Nicotinamide riboside transporter PnuC, at 1,440,570 to 1,441,289 _01378 MPMX20_01379: MPMX20_01379 - Zinc transporter ZitB, at 1,441,286 to 1,442,224 _01379 Position (kb) 1439 1440 1441Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1438.560 kb on - strandat 1438.583 kb on + strandat 1438.739 kb on + strand, within MPMX20_01372at 1438.763 kb on + strandat 1438.771 kb on - strandat 1438.771 kb on - strandat 1438.828 kb on - strand, within MPMX20_01373at 1438.963 kb on - strandat 1439.077 kb on + strandat 1439.161 kb on + strandat 1439.561 kb on - strandat 1439.599 kb on + strandat 1439.642 kb on + strand, within MPMX20_01377at 1439.644 kb on + strand, within MPMX20_01377at 1439.652 kb on - strand, within MPMX20_01377at 1439.652 kb on - strand, within MPMX20_01377at 1439.652 kb on - strand, within MPMX20_01377at 1439.904 kb on + strand, within MPMX20_01377at 1439.921 kb on + strand, within MPMX20_01377at 1439.953 kb on + strand, within MPMX20_01377at 1440.072 kb on + strand, within MPMX20_01377at 1440.077 kb on + strand, within MPMX20_01377at 1440.290 kb on - strand, within MPMX20_01377at 1440.374 kb on + strand, within MPMX20_01377at 1440.382 kb on - strand, within MPMX20_01377at 1440.404 kb on + strand, within MPMX20_01377at 1440.426 kb on + strand, within MPMX20_01377at 1440.447 kb on - strandat 1440.484 kb on + strandat 1440.484 kb on + strandat 1440.484 kb on + strandat 1440.484 kb on + strandat 1440.492 kb on - strandat 1440.633 kb on - strandat 1440.635 kb on + strandat 1440.643 kb on - strand, within MPMX20_01378at 1440.738 kb on - strand, within MPMX20_01378at 1440.767 kb on + strand, within MPMX20_01378at 1440.775 kb on - strand, within MPMX20_01378at 1440.845 kb on - strand, within MPMX20_01378at 1440.845 kb on - strand, within MPMX20_01378at 1440.855 kb on - strand, within MPMX20_01378at 1440.938 kb on - strand, within MPMX20_01378at 1440.966 kb on + strand, within MPMX20_01378at 1440.974 kb on - strand, within MPMX20_01378at 1440.994 kb on + strand, within MPMX20_01378at 1441.216 kb on + strand, within MPMX20_01378at 1441.224 kb on - strandat 1441.355 kb on - strandat 1441.360 kb on - strandat 1441.376 kb on + strandat 1441.419 kb on + strand, within MPMX20_01379at 1441.419 kb on + strand, within MPMX20_01379at 1441.510 kb on + strand, within MPMX20_01379at 1441.533 kb on - strand, within MPMX20_01379at 1441.536 kb on + strand, within MPMX20_01379

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
remove
1,438,560 - +1.4
1,438,583 + +0.2
1,438,739 + MPMX20_01372 0.67 +0.9
1,438,763 + +1.5
1,438,771 - +2.1
1,438,771 - -1.3
1,438,828 - MPMX20_01373 0.49 -1.6
1,438,963 - -0.6
1,439,077 + -1.6
1,439,161 + -0.2
1,439,561 - +0.8
1,439,599 + -2.3
1,439,642 + MPMX20_01377 0.13 -3.1
1,439,644 + MPMX20_01377 0.13 +1.4
1,439,652 - MPMX20_01377 0.14 -0.1
1,439,652 - MPMX20_01377 0.14 +0.7
1,439,652 - MPMX20_01377 0.14 -0.6
1,439,904 + MPMX20_01377 0.38 -2.1
1,439,921 + MPMX20_01377 0.40 -0.3
1,439,953 + MPMX20_01377 0.43 -1.8
1,440,072 + MPMX20_01377 0.54 +0.5
1,440,077 + MPMX20_01377 0.55 -1.5
1,440,290 - MPMX20_01377 0.75 -2.6
1,440,374 + MPMX20_01377 0.83 -2.8
1,440,382 - MPMX20_01377 0.84 +0.7
1,440,404 + MPMX20_01377 0.86 +0.3
1,440,426 + MPMX20_01377 0.88 +0.1
1,440,447 - -1.9
1,440,484 + -1.2
1,440,484 + +0.3
1,440,484 + -0.9
1,440,484 + +0.9
1,440,492 - -3.8
1,440,633 - +0.3
1,440,635 + -1.4
1,440,643 - MPMX20_01378 0.10 +1.2
1,440,738 - MPMX20_01378 0.23 -0.4
1,440,767 + MPMX20_01378 0.27 -2.7
1,440,775 - MPMX20_01378 0.28 -2.1
1,440,845 - MPMX20_01378 0.38 -3.8
1,440,845 - MPMX20_01378 0.38 +0.4
1,440,855 - MPMX20_01378 0.40 +2.0
1,440,938 - MPMX20_01378 0.51 +2.8
1,440,966 + MPMX20_01378 0.55 +0.1
1,440,974 - MPMX20_01378 0.56 +0.9
1,440,994 + MPMX20_01378 0.59 +1.5
1,441,216 + MPMX20_01378 0.90 -0.1
1,441,224 - +2.3
1,441,355 - +1.1
1,441,360 - +0.9
1,441,376 + -0.5
1,441,419 + MPMX20_01379 0.14 -0.9
1,441,419 + MPMX20_01379 0.14 +1.7
1,441,510 + MPMX20_01379 0.24 -0.0
1,441,533 - MPMX20_01379 0.26 -0.1
1,441,536 + MPMX20_01379 0.27 -0.1

Or see this region's nucleotide sequence