Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03699

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03698 and MPMX20_03699 are separated by 424 nucleotidesMPMX20_03699 and MPMX20_03700 overlap by 40 nucleotidesMPMX20_03700 and MPMX20_03701 overlap by 4 nucleotides MPMX20_03698: MPMX20_03698 - Bifunctional protein Aas, at 3,897,534 to 3,899,693 _03698 MPMX20_03699: MPMX20_03699 - HTH-type transcriptional regulator GalR, at 3,900,118 to 3,901,134 _03699 MPMX20_03700: MPMX20_03700 - hypothetical protein, at 3,901,095 to 3,901,571 _03700 MPMX20_03701: MPMX20_03701 - Glc operon transcriptional activator, at 3,901,568 to 3,902,341 _03701 Position (kb) 3900 3901 3902Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3899.305 kb on + strand, within MPMX20_03698at 3899.403 kb on + strand, within MPMX20_03698at 3899.499 kb on - strandat 3899.519 kb on - strandat 3899.621 kb on + strandat 3899.677 kb on - strandat 3899.693 kb on + strandat 3899.730 kb on + strandat 3899.820 kb on - strandat 3899.820 kb on - strandat 3899.830 kb on - strandat 3899.859 kb on + strandat 3899.866 kb on + strandat 3899.883 kb on + strandat 3899.926 kb on + strandat 3899.965 kb on + strandat 3900.003 kb on + strandat 3900.003 kb on + strandat 3900.029 kb on + strandat 3900.191 kb on + strandat 3900.200 kb on - strandat 3900.288 kb on - strand, within MPMX20_03699at 3900.300 kb on - strand, within MPMX20_03699at 3900.305 kb on + strand, within MPMX20_03699at 3900.307 kb on - strand, within MPMX20_03699at 3900.364 kb on - strand, within MPMX20_03699at 3900.447 kb on + strand, within MPMX20_03699at 3900.464 kb on + strand, within MPMX20_03699at 3900.464 kb on + strand, within MPMX20_03699at 3900.528 kb on + strand, within MPMX20_03699at 3900.634 kb on + strand, within MPMX20_03699at 3900.655 kb on + strand, within MPMX20_03699at 3900.663 kb on - strand, within MPMX20_03699at 3900.696 kb on - strand, within MPMX20_03699at 3900.713 kb on + strand, within MPMX20_03699at 3900.718 kb on - strand, within MPMX20_03699at 3900.770 kb on + strand, within MPMX20_03699at 3900.803 kb on - strand, within MPMX20_03699at 3900.803 kb on - strand, within MPMX20_03699at 3900.845 kb on + strand, within MPMX20_03699at 3900.896 kb on + strand, within MPMX20_03699at 3900.948 kb on - strand, within MPMX20_03699at 3900.967 kb on + strand, within MPMX20_03699at 3901.066 kb on + strandat 3901.071 kb on + strandat 3901.071 kb on + strandat 3901.081 kb on + strandat 3901.092 kb on + strandat 3901.122 kb on - strandat 3901.210 kb on - strand, within MPMX20_03700at 3901.243 kb on + strand, within MPMX20_03700at 3901.251 kb on - strand, within MPMX20_03700at 3901.401 kb on - strand, within MPMX20_03700at 3901.415 kb on + strand, within MPMX20_03700at 3901.439 kb on + strand, within MPMX20_03700at 3901.445 kb on + strand, within MPMX20_03700at 3901.537 kb on - strandat 3901.566 kb on + strandat 3901.574 kb on - strandat 3901.631 kb on + strandat 3901.645 kb on + strandat 3901.716 kb on - strand, within MPMX20_03701at 3901.776 kb on - strand, within MPMX20_03701at 3901.781 kb on + strand, within MPMX20_03701at 3901.836 kb on + strand, within MPMX20_03701at 3901.836 kb on + strand, within MPMX20_03701at 3901.837 kb on + strand, within MPMX20_03701at 3901.843 kb on - strand, within MPMX20_03701at 3901.877 kb on + strand, within MPMX20_03701at 3901.880 kb on - strand, within MPMX20_03701at 3902.046 kb on + strand, within MPMX20_03701at 3902.125 kb on + strand, within MPMX20_03701

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,899,305 + MPMX20_03698 0.82 -0.6
3,899,403 + MPMX20_03698 0.87 +0.4
3,899,499 - +0.4
3,899,519 - -2.9
3,899,621 + -0.3
3,899,677 - -0.4
3,899,693 + -0.3
3,899,730 + -0.1
3,899,820 - -0.1
3,899,820 - +0.3
3,899,830 - +1.8
3,899,859 + +2.0
3,899,866 + -0.6
3,899,883 + +0.1
3,899,926 + -1.5
3,899,965 + -0.3
3,900,003 + +0.1
3,900,003 + +0.2
3,900,029 + -0.5
3,900,191 + -1.3
3,900,200 - -1.3
3,900,288 - MPMX20_03699 0.17 -1.2
3,900,300 - MPMX20_03699 0.18 +1.3
3,900,305 + MPMX20_03699 0.18 -1.9
3,900,307 - MPMX20_03699 0.19 -2.1
3,900,364 - MPMX20_03699 0.24 +0.0
3,900,447 + MPMX20_03699 0.32 -1.4
3,900,464 + MPMX20_03699 0.34 -0.5
3,900,464 + MPMX20_03699 0.34 -2.0
3,900,528 + MPMX20_03699 0.40 -1.4
3,900,634 + MPMX20_03699 0.51 -1.7
3,900,655 + MPMX20_03699 0.53 -2.6
3,900,663 - MPMX20_03699 0.54 -1.0
3,900,696 - MPMX20_03699 0.57 -2.3
3,900,713 + MPMX20_03699 0.59 -1.0
3,900,718 - MPMX20_03699 0.59 +0.2
3,900,770 + MPMX20_03699 0.64 -1.4
3,900,803 - MPMX20_03699 0.67 -1.4
3,900,803 - MPMX20_03699 0.67 -0.2
3,900,845 + MPMX20_03699 0.71 -2.0
3,900,896 + MPMX20_03699 0.76 -0.7
3,900,948 - MPMX20_03699 0.82 -0.2
3,900,967 + MPMX20_03699 0.83 -0.5
3,901,066 + -1.4
3,901,071 + +1.7
3,901,071 + -1.2
3,901,081 + -2.5
3,901,092 + -1.9
3,901,122 - +1.1
3,901,210 - MPMX20_03700 0.24 -1.0
3,901,243 + MPMX20_03700 0.31 +0.0
3,901,251 - MPMX20_03700 0.33 +0.1
3,901,401 - MPMX20_03700 0.64 -0.3
3,901,415 + MPMX20_03700 0.67 +0.4
3,901,439 + MPMX20_03700 0.72 +0.5
3,901,445 + MPMX20_03700 0.73 -1.3
3,901,537 - -1.3
3,901,566 + +0.1
3,901,574 - +1.3
3,901,631 + +0.4
3,901,645 + +0.2
3,901,716 - MPMX20_03701 0.19 +0.6
3,901,776 - MPMX20_03701 0.27 +0.8
3,901,781 + MPMX20_03701 0.28 +0.1
3,901,836 + MPMX20_03701 0.35 +0.1
3,901,836 + MPMX20_03701 0.35 +0.0
3,901,837 + MPMX20_03701 0.35 +1.3
3,901,843 - MPMX20_03701 0.36 -0.1
3,901,877 + MPMX20_03701 0.40 +0.1
3,901,880 - MPMX20_03701 0.40 +0.4
3,902,046 + MPMX20_03701 0.62 +0.1
3,902,125 + MPMX20_03701 0.72 -0.4

Or see this region's nucleotide sequence