Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04532

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04531 and MPMX20_04532 are separated by 276 nucleotidesMPMX20_04532 and MPMX20_04533 are separated by 48 nucleotidesMPMX20_04533 and MPMX20_04534 are separated by 200 nucleotides MPMX20_04531: MPMX20_04531 - Cystathionine gamma-synthase, at 4,744,288 to 4,745,448 _04531 MPMX20_04532: MPMX20_04532 - Met repressor, at 4,745,725 to 4,746,042 _04532 MPMX20_04533: MPMX20_04533 - 50S ribosomal protein L31, at 4,746,091 to 4,746,303 _04533 MPMX20_04534: MPMX20_04534 - Primosomal protein N', at 4,746,504 to 4,748,699 _04534 Position (kb) 4745 4746 4747Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4744.735 kb on + strand, within MPMX20_04531at 4744.765 kb on - strand, within MPMX20_04531at 4744.775 kb on + strand, within MPMX20_04531at 4744.824 kb on - strand, within MPMX20_04531at 4744.890 kb on + strand, within MPMX20_04531at 4744.898 kb on - strand, within MPMX20_04531at 4744.903 kb on + strand, within MPMX20_04531at 4744.925 kb on + strand, within MPMX20_04531at 4744.925 kb on + strand, within MPMX20_04531at 4744.932 kb on + strand, within MPMX20_04531at 4744.932 kb on + strand, within MPMX20_04531at 4744.932 kb on - strand, within MPMX20_04531at 4744.940 kb on - strand, within MPMX20_04531at 4745.015 kb on + strand, within MPMX20_04531at 4745.144 kb on + strand, within MPMX20_04531at 4745.158 kb on - strand, within MPMX20_04531at 4745.219 kb on + strand, within MPMX20_04531at 4745.238 kb on - strand, within MPMX20_04531at 4745.317 kb on - strand, within MPMX20_04531at 4745.319 kb on - strand, within MPMX20_04531at 4745.392 kb on - strandat 4745.394 kb on - strandat 4745.421 kb on + strandat 4745.436 kb on + strandat 4745.449 kb on + strandat 4745.457 kb on - strandat 4745.471 kb on - strandat 4745.633 kb on - strandat 4745.637 kb on + strandat 4745.667 kb on - strandat 4745.710 kb on + strandat 4745.710 kb on + strandat 4745.820 kb on - strand, within MPMX20_04532at 4745.893 kb on + strand, within MPMX20_04532at 4745.953 kb on - strand, within MPMX20_04532at 4745.953 kb on - strand, within MPMX20_04532at 4746.002 kb on - strand, within MPMX20_04532at 4746.117 kb on - strand, within MPMX20_04533at 4746.464 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
4,744,735 + MPMX20_04531 0.39 -3.1
4,744,765 - MPMX20_04531 0.41 -4.3
4,744,775 + MPMX20_04531 0.42 -1.0
4,744,824 - MPMX20_04531 0.46 -3.3
4,744,890 + MPMX20_04531 0.52 -3.9
4,744,898 - MPMX20_04531 0.53 -3.8
4,744,903 + MPMX20_04531 0.53 -2.1
4,744,925 + MPMX20_04531 0.55 -2.6
4,744,925 + MPMX20_04531 0.55 -1.6
4,744,932 + MPMX20_04531 0.55 -2.3
4,744,932 + MPMX20_04531 0.55 -3.4
4,744,932 - MPMX20_04531 0.55 -3.2
4,744,940 - MPMX20_04531 0.56 -1.9
4,745,015 + MPMX20_04531 0.63 -2.5
4,745,144 + MPMX20_04531 0.74 -1.8
4,745,158 - MPMX20_04531 0.75 -2.8
4,745,219 + MPMX20_04531 0.80 -4.3
4,745,238 - MPMX20_04531 0.82 -3.0
4,745,317 - MPMX20_04531 0.89 -2.3
4,745,319 - MPMX20_04531 0.89 +0.0
4,745,392 - -2.9
4,745,394 - -1.9
4,745,421 + -4.0
4,745,436 + -3.7
4,745,449 + -1.4
4,745,457 - -3.1
4,745,471 - +0.8
4,745,633 - +0.0
4,745,637 + -0.4
4,745,667 - +0.9
4,745,710 + +0.9
4,745,710 + -0.1
4,745,820 - MPMX20_04532 0.30 -0.4
4,745,893 + MPMX20_04532 0.53 -2.9
4,745,953 - MPMX20_04532 0.72 -1.1
4,745,953 - MPMX20_04532 0.72 -3.2
4,746,002 - MPMX20_04532 0.87 -0.5
4,746,117 - MPMX20_04533 0.12 -1.2
4,746,464 + -0.0

Or see this region's nucleotide sequence