Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04520

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04519 and MPMX20_04520 are separated by 324 nucleotidesMPMX20_04520 and MPMX20_04521 are separated by 78 nucleotidesMPMX20_04521 and MPMX20_04522 are separated by 9 nucleotides MPMX20_04519: MPMX20_04519 - Hydrogen peroxide-inducible genes activator, at 4,726,918 to 4,727,835 _04519 MPMX20_04520: MPMX20_04520 - Argininosuccinate lyase, at 4,728,160 to 4,729,533 _04520 MPMX20_04521: MPMX20_04521 - Acetylglutamate kinase, at 4,729,612 to 4,730,385 _04521 MPMX20_04522: MPMX20_04522 - N-acetyl-gamma-glutamyl-phosphate reductase, at 4,730,395 to 4,731,399 _04522 Position (kb) 4728 4729 4730Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 4727.347 kb on - strand, within MPMX20_04519at 4727.383 kb on + strand, within MPMX20_04519at 4727.384 kb on + strand, within MPMX20_04519at 4727.392 kb on - strand, within MPMX20_04519at 4727.450 kb on - strand, within MPMX20_04519at 4727.450 kb on - strand, within MPMX20_04519at 4727.466 kb on + strand, within MPMX20_04519at 4727.496 kb on - strand, within MPMX20_04519at 4727.512 kb on - strand, within MPMX20_04519at 4727.523 kb on + strand, within MPMX20_04519at 4727.531 kb on - strand, within MPMX20_04519at 4727.537 kb on - strand, within MPMX20_04519at 4727.547 kb on + strand, within MPMX20_04519at 4727.607 kb on + strand, within MPMX20_04519at 4727.607 kb on + strand, within MPMX20_04519at 4727.635 kb on - strand, within MPMX20_04519at 4727.635 kb on - strand, within MPMX20_04519at 4727.742 kb on + strand, within MPMX20_04519at 4727.750 kb on - strandat 4727.820 kb on - strandat 4727.926 kb on + strandat 4728.143 kb on - strandat 4728.151 kb on - strandat 4728.158 kb on + strandat 4728.166 kb on - strandat 4728.166 kb on - strandat 4728.250 kb on + strandat 4728.281 kb on - strandat 4728.340 kb on - strand, within MPMX20_04520at 4728.350 kb on + strand, within MPMX20_04520at 4728.358 kb on - strand, within MPMX20_04520at 4728.401 kb on - strand, within MPMX20_04520at 4728.435 kb on + strand, within MPMX20_04520at 4728.445 kb on + strand, within MPMX20_04520at 4728.445 kb on + strand, within MPMX20_04520at 4728.509 kb on + strand, within MPMX20_04520at 4728.509 kb on + strand, within MPMX20_04520at 4728.560 kb on - strand, within MPMX20_04520at 4728.630 kb on - strand, within MPMX20_04520at 4728.631 kb on + strand, within MPMX20_04520at 4728.671 kb on - strand, within MPMX20_04520at 4728.713 kb on - strand, within MPMX20_04520at 4728.714 kb on - strand, within MPMX20_04520at 4728.755 kb on - strand, within MPMX20_04520at 4728.800 kb on - strand, within MPMX20_04520at 4728.861 kb on - strand, within MPMX20_04520at 4728.870 kb on - strand, within MPMX20_04520at 4728.941 kb on + strand, within MPMX20_04520at 4728.941 kb on + strand, within MPMX20_04520at 4728.946 kb on + strand, within MPMX20_04520at 4728.970 kb on + strand, within MPMX20_04520at 4728.970 kb on + strand, within MPMX20_04520at 4729.042 kb on + strand, within MPMX20_04520at 4729.043 kb on - strand, within MPMX20_04520at 4729.070 kb on + strand, within MPMX20_04520at 4729.109 kb on + strand, within MPMX20_04520at 4729.109 kb on + strand, within MPMX20_04520at 4729.109 kb on + strand, within MPMX20_04520at 4729.117 kb on - strand, within MPMX20_04520at 4729.117 kb on - strand, within MPMX20_04520at 4729.117 kb on - strand, within MPMX20_04520at 4729.132 kb on - strand, within MPMX20_04520at 4729.139 kb on - strand, within MPMX20_04520at 4729.198 kb on - strand, within MPMX20_04520at 4729.276 kb on + strand, within MPMX20_04520at 4729.284 kb on - strand, within MPMX20_04520at 4729.325 kb on - strand, within MPMX20_04520at 4729.325 kb on - strand, within MPMX20_04520at 4729.399 kb on + strandat 4729.489 kb on + strandat 4729.508 kb on + strandat 4729.528 kb on - strandat 4729.579 kb on + strandat 4729.579 kb on + strandat 4729.582 kb on - strandat 4729.584 kb on + strandat 4729.587 kb on - strandat 4729.592 kb on - strandat 4729.651 kb on - strandat 4729.651 kb on - strandat 4729.760 kb on + strand, within MPMX20_04521at 4729.902 kb on + strand, within MPMX20_04521at 4729.949 kb on + strand, within MPMX20_04521at 4729.949 kb on - strand, within MPMX20_04521at 4729.949 kb on - strand, within MPMX20_04521at 4729.973 kb on + strand, within MPMX20_04521at 4729.995 kb on + strand, within MPMX20_04521at 4730.011 kb on - strand, within MPMX20_04521at 4730.017 kb on - strand, within MPMX20_04521at 4730.018 kb on + strand, within MPMX20_04521at 4730.021 kb on - strand, within MPMX20_04521at 4730.028 kb on + strand, within MPMX20_04521at 4730.055 kb on + strand, within MPMX20_04521at 4730.063 kb on - strand, within MPMX20_04521at 4730.079 kb on + strand, within MPMX20_04521at 4730.082 kb on - strand, within MPMX20_04521at 4730.083 kb on - strand, within MPMX20_04521at 4730.091 kb on - strand, within MPMX20_04521at 4730.091 kb on - strand, within MPMX20_04521at 4730.175 kb on + strand, within MPMX20_04521at 4730.183 kb on + strand, within MPMX20_04521at 4730.191 kb on - strand, within MPMX20_04521at 4730.220 kb on + strand, within MPMX20_04521at 4730.326 kb on + strandat 4730.334 kb on + strandat 4730.334 kb on + strandat 4730.344 kb on + strandat 4730.344 kb on + strandat 4730.344 kb on + strandat 4730.344 kb on + strandat 4730.344 kb on + strandat 4730.344 kb on + strandat 4730.344 kb on + strandat 4730.344 kb on + strandat 4730.349 kb on + strandat 4730.349 kb on + strandat 4730.352 kb on + strandat 4730.352 kb on + strandat 4730.352 kb on - strandat 4730.433 kb on + strandat 4730.443 kb on + strandat 4730.452 kb on - strandat 4730.476 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,727,347 - MPMX20_04519 0.47 -0.1
4,727,383 + MPMX20_04519 0.51 -1.5
4,727,384 + MPMX20_04519 0.51 -2.5
4,727,392 - MPMX20_04519 0.52 -0.1
4,727,450 - MPMX20_04519 0.58 -1.4
4,727,450 - MPMX20_04519 0.58 +0.9
4,727,466 + MPMX20_04519 0.60 +0.4
4,727,496 - MPMX20_04519 0.63 -0.4
4,727,512 - MPMX20_04519 0.65 +1.7
4,727,523 + MPMX20_04519 0.66 +0.7
4,727,531 - MPMX20_04519 0.67 +0.8
4,727,537 - MPMX20_04519 0.67 -1.3
4,727,547 + MPMX20_04519 0.69 -0.6
4,727,607 + MPMX20_04519 0.75 +0.6
4,727,607 + MPMX20_04519 0.75 -2.3
4,727,635 - MPMX20_04519 0.78 +0.8
4,727,635 - MPMX20_04519 0.78 -0.5
4,727,742 + MPMX20_04519 0.90 +0.1
4,727,750 - -1.5
4,727,820 - +1.4
4,727,926 + -1.4
4,728,143 - +0.0
4,728,151 - -1.0
4,728,158 + -1.0
4,728,166 - -0.1
4,728,166 - +0.1
4,728,250 + -2.9
4,728,281 - -2.4
4,728,340 - MPMX20_04520 0.13 -0.2
4,728,350 + MPMX20_04520 0.14 -0.2
4,728,358 - MPMX20_04520 0.14 -4.9
4,728,401 - MPMX20_04520 0.18 -2.1
4,728,435 + MPMX20_04520 0.20 -0.6
4,728,445 + MPMX20_04520 0.21 -2.8
4,728,445 + MPMX20_04520 0.21 -3.9
4,728,509 + MPMX20_04520 0.25 -2.2
4,728,509 + MPMX20_04520 0.25 +0.1
4,728,560 - MPMX20_04520 0.29 -2.9
4,728,630 - MPMX20_04520 0.34 -2.3
4,728,631 + MPMX20_04520 0.34 -4.1
4,728,671 - MPMX20_04520 0.37 -1.8
4,728,713 - MPMX20_04520 0.40 -2.1
4,728,714 - MPMX20_04520 0.40 -1.5
4,728,755 - MPMX20_04520 0.43 -2.4
4,728,800 - MPMX20_04520 0.47 -4.3
4,728,861 - MPMX20_04520 0.51 -5.4
4,728,870 - MPMX20_04520 0.52 -3.7
4,728,941 + MPMX20_04520 0.57 -3.2
4,728,941 + MPMX20_04520 0.57 -0.4
4,728,946 + MPMX20_04520 0.57 -1.4
4,728,970 + MPMX20_04520 0.59 -1.6
4,728,970 + MPMX20_04520 0.59 -3.2
4,729,042 + MPMX20_04520 0.64 -4.3
4,729,043 - MPMX20_04520 0.64 -1.5
4,729,070 + MPMX20_04520 0.66 -1.0
4,729,109 + MPMX20_04520 0.69 +0.4
4,729,109 + MPMX20_04520 0.69 -3.3
4,729,109 + MPMX20_04520 0.69 -3.9
4,729,117 - MPMX20_04520 0.70 -1.7
4,729,117 - MPMX20_04520 0.70 -1.5
4,729,117 - MPMX20_04520 0.70 -2.0
4,729,132 - MPMX20_04520 0.71 -5.4
4,729,139 - MPMX20_04520 0.71 -3.1
4,729,198 - MPMX20_04520 0.76 -1.2
4,729,276 + MPMX20_04520 0.81 +0.1
4,729,284 - MPMX20_04520 0.82 -4.7
4,729,325 - MPMX20_04520 0.85 -0.4
4,729,325 - MPMX20_04520 0.85 -0.4
4,729,399 + -2.3
4,729,489 + -3.0
4,729,508 + -3.9
4,729,528 - -0.8
4,729,579 + -2.8
4,729,579 + -2.4
4,729,582 - -0.2
4,729,584 + -2.1
4,729,587 - -1.7
4,729,592 - +5.4
4,729,651 - -0.4
4,729,651 - -2.2
4,729,760 + MPMX20_04521 0.19 -0.8
4,729,902 + MPMX20_04521 0.37 -1.0
4,729,949 + MPMX20_04521 0.44 -2.5
4,729,949 - MPMX20_04521 0.44 -0.4
4,729,949 - MPMX20_04521 0.44 -1.6
4,729,973 + MPMX20_04521 0.47 -2.8
4,729,995 + MPMX20_04521 0.49 -1.5
4,730,011 - MPMX20_04521 0.52 -3.4
4,730,017 - MPMX20_04521 0.52 -3.7
4,730,018 + MPMX20_04521 0.52 +0.4
4,730,021 - MPMX20_04521 0.53 -1.3
4,730,028 + MPMX20_04521 0.54 -0.6
4,730,055 + MPMX20_04521 0.57 -4.6
4,730,063 - MPMX20_04521 0.58 -3.6
4,730,079 + MPMX20_04521 0.60 -4.0
4,730,082 - MPMX20_04521 0.61 -3.7
4,730,083 - MPMX20_04521 0.61 -4.6
4,730,091 - MPMX20_04521 0.62 -2.9
4,730,091 - MPMX20_04521 0.62 +0.1
4,730,175 + MPMX20_04521 0.73 -3.4
4,730,183 + MPMX20_04521 0.74 -4.1
4,730,191 - MPMX20_04521 0.75 -3.8
4,730,220 + MPMX20_04521 0.79 -0.4
4,730,326 + -2.0
4,730,334 + -3.6
4,730,334 + -3.0
4,730,344 + -1.3
4,730,344 + -4.2
4,730,344 + -2.4
4,730,344 + -2.4
4,730,344 + -1.2
4,730,344 + -1.8
4,730,344 + -3.0
4,730,344 + -2.0
4,730,349 + -1.7
4,730,349 + -1.6
4,730,352 + -4.9
4,730,352 + -0.2
4,730,352 - -3.2
4,730,433 + -0.9
4,730,443 + -3.1
4,730,452 - -1.8
4,730,476 + -2.9

Or see this region's nucleotide sequence