Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00708

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00707 and MPMX20_00708 are separated by 42 nucleotidesMPMX20_00708 and MPMX20_00709 are separated by 635 nucleotides MPMX20_00707: MPMX20_00707 - Inner membrane protein CreD, at 727,346 to 728,698 _00707 MPMX20_00708: MPMX20_00708 - Aerobic respiration control protein ArcA, at 728,741 to 729,457 _00708 MPMX20_00709: MPMX20_00709 - putative tRNA/rRNA methyltransferase, at 730,093 to 730,779 _00709 Position (kb) 728 729 730Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 727.743 kb on - strand, within MPMX20_00707at 727.743 kb on - strand, within MPMX20_00707at 727.845 kb on + strand, within MPMX20_00707at 727.853 kb on - strand, within MPMX20_00707at 727.853 kb on - strand, within MPMX20_00707at 727.853 kb on - strand, within MPMX20_00707at 727.860 kb on - strand, within MPMX20_00707at 727.940 kb on - strand, within MPMX20_00707at 727.971 kb on - strand, within MPMX20_00707at 727.978 kb on + strand, within MPMX20_00707at 728.029 kb on + strand, within MPMX20_00707at 728.055 kb on + strand, within MPMX20_00707at 728.123 kb on + strand, within MPMX20_00707at 728.289 kb on - strand, within MPMX20_00707at 728.372 kb on - strand, within MPMX20_00707at 728.382 kb on - strand, within MPMX20_00707at 728.382 kb on - strand, within MPMX20_00707at 728.382 kb on - strand, within MPMX20_00707at 728.391 kb on - strand, within MPMX20_00707at 728.396 kb on - strand, within MPMX20_00707at 728.403 kb on + strand, within MPMX20_00707at 728.406 kb on - strand, within MPMX20_00707at 728.417 kb on - strand, within MPMX20_00707at 728.431 kb on + strand, within MPMX20_00707at 728.431 kb on + strand, within MPMX20_00707at 728.439 kb on - strand, within MPMX20_00707at 728.439 kb on - strand, within MPMX20_00707at 728.447 kb on - strand, within MPMX20_00707at 728.508 kb on - strand, within MPMX20_00707at 728.543 kb on - strand, within MPMX20_00707at 728.543 kb on - strand, within MPMX20_00707at 728.594 kb on + strandat 728.604 kb on - strandat 728.638 kb on + strandat 728.747 kb on - strandat 728.766 kb on + strandat 728.780 kb on - strandat 728.859 kb on - strand, within MPMX20_00708at 728.953 kb on - strand, within MPMX20_00708at 728.976 kb on + strand, within MPMX20_00708at 728.976 kb on + strand, within MPMX20_00708at 728.984 kb on - strand, within MPMX20_00708at 728.984 kb on - strand, within MPMX20_00708at 729.081 kb on + strand, within MPMX20_00708at 729.104 kb on - strand, within MPMX20_00708at 729.104 kb on - strand, within MPMX20_00708at 729.109 kb on - strand, within MPMX20_00708at 729.132 kb on - strand, within MPMX20_00708at 729.138 kb on + strand, within MPMX20_00708at 729.163 kb on - strand, within MPMX20_00708at 729.242 kb on - strand, within MPMX20_00708at 729.343 kb on + strand, within MPMX20_00708at 729.378 kb on - strand, within MPMX20_00708at 729.450 kb on + strandat 729.514 kb on + strandat 729.515 kb on + strandat 729.523 kb on - strandat 729.594 kb on - strandat 729.635 kb on - strandat 729.661 kb on + strandat 729.666 kb on + strandat 729.680 kb on - strandat 729.696 kb on + strandat 729.704 kb on - strandat 729.757 kb on - strandat 729.763 kb on + strandat 729.771 kb on - strandat 729.795 kb on + strandat 729.798 kb on - strandat 729.857 kb on + strandat 729.913 kb on + strandat 729.933 kb on + strandat 730.122 kb on + strandat 730.199 kb on + strand, within MPMX20_00709at 730.224 kb on + strand, within MPMX20_00709at 730.334 kb on + strand, within MPMX20_00709at 730.344 kb on + strand, within MPMX20_00709at 730.404 kb on - strand, within MPMX20_00709at 730.412 kb on + strand, within MPMX20_00709

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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727,743 - MPMX20_00707 0.29 -1.0
727,743 - MPMX20_00707 0.29 +0.0
727,845 + MPMX20_00707 0.37 +0.3
727,853 - MPMX20_00707 0.37 -0.2
727,853 - MPMX20_00707 0.37 -0.4
727,853 - MPMX20_00707 0.37 -2.4
727,860 - MPMX20_00707 0.38 +2.1
727,940 - MPMX20_00707 0.44 +1.2
727,971 - MPMX20_00707 0.46 -0.8
727,978 + MPMX20_00707 0.47 -0.5
728,029 + MPMX20_00707 0.50 +0.3
728,055 + MPMX20_00707 0.52 +1.2
728,123 + MPMX20_00707 0.57 -0.3
728,289 - MPMX20_00707 0.70 -2.4
728,372 - MPMX20_00707 0.76 +2.5
728,382 - MPMX20_00707 0.77 -1.1
728,382 - MPMX20_00707 0.77 +1.2
728,382 - MPMX20_00707 0.77 -1.3
728,391 - MPMX20_00707 0.77 -1.8
728,396 - MPMX20_00707 0.78 +2.4
728,403 + MPMX20_00707 0.78 -1.8
728,406 - MPMX20_00707 0.78 +1.2
728,417 - MPMX20_00707 0.79 +0.5
728,431 + MPMX20_00707 0.80 +0.2
728,431 + MPMX20_00707 0.80 +1.7
728,439 - MPMX20_00707 0.81 +0.6
728,439 - MPMX20_00707 0.81 -0.1
728,447 - MPMX20_00707 0.81 -0.1
728,508 - MPMX20_00707 0.86 +2.1
728,543 - MPMX20_00707 0.88 +1.4
728,543 - MPMX20_00707 0.88 -0.4
728,594 + +1.8
728,604 - +0.6
728,638 + +3.2
728,747 - +1.2
728,766 + -2.9
728,780 - -1.0
728,859 - MPMX20_00708 0.16 -1.6
728,953 - MPMX20_00708 0.30 -2.6
728,976 + MPMX20_00708 0.33 -1.9
728,976 + MPMX20_00708 0.33 -2.1
728,984 - MPMX20_00708 0.34 -1.4
728,984 - MPMX20_00708 0.34 -0.6
729,081 + MPMX20_00708 0.47 -1.3
729,104 - MPMX20_00708 0.51 -1.8
729,104 - MPMX20_00708 0.51 -2.0
729,109 - MPMX20_00708 0.51 -1.7
729,132 - MPMX20_00708 0.55 -4.1
729,138 + MPMX20_00708 0.55 +0.7
729,163 - MPMX20_00708 0.59 -3.8
729,242 - MPMX20_00708 0.70 +0.3
729,343 + MPMX20_00708 0.84 -2.4
729,378 - MPMX20_00708 0.89 -0.1
729,450 + +0.9
729,514 + -1.0
729,515 + -1.5
729,523 - +2.2
729,594 - +0.2
729,635 - +0.8
729,661 + -1.1
729,666 + -0.1
729,680 - -1.0
729,696 + -2.8
729,704 - +0.6
729,757 - +0.1
729,763 + +0.2
729,771 - +0.3
729,795 + -2.9
729,798 - +0.5
729,857 + -1.3
729,913 + +0.4
729,933 + +1.8
730,122 + -0.8
730,199 + MPMX20_00709 0.15 -0.4
730,224 + MPMX20_00709 0.19 +0.9
730,334 + MPMX20_00709 0.35 +0.7
730,344 + MPMX20_00709 0.37 +0.1
730,404 - MPMX20_00709 0.45 -0.6
730,412 + MPMX20_00709 0.46 -0.3

Or see this region's nucleotide sequence