Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03441 and MPMX20_03442 overlap by 4 nucleotides MPMX20_03442 and MPMX20_03443 overlap by 1 nucleotides MPMX20_03443 and MPMX20_03444 are separated by 31 nucleotides
MPMX20_03441: MPMX20_03441 - Protein RseC, at 3,629,026 to 3,629,502
_03441
MPMX20_03442: MPMX20_03442 - Sigma-E factor regulatory protein RseB, at 3,629,499 to 3,630,452
_03442
MPMX20_03443: MPMX20_03443 - Anti-sigma-E factor RseA, at 3,630,452 to 3,631,102
_03443
MPMX20_03444: MPMX20_03444 - ECF RNA polymerase sigma-E factor, at 3,631,134 to 3,631,709
_03444
Position (kb)
3630
3631
3632 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3629.516 kb on + strand at 3629.530 kb on + strand at 3629.571 kb on + strand at 3629.577 kb on - strand at 3629.594 kb on + strand at 3629.594 kb on + strand at 3629.641 kb on - strand, within MPMX20_03442 at 3629.641 kb on - strand, within MPMX20_03442 at 3629.753 kb on - strand, within MPMX20_03442 at 3629.818 kb on + strand, within MPMX20_03442 at 3629.863 kb on + strand, within MPMX20_03442 at 3629.899 kb on + strand, within MPMX20_03442 at 3629.907 kb on - strand, within MPMX20_03442 at 3629.909 kb on + strand, within MPMX20_03442 at 3629.917 kb on - strand, within MPMX20_03442 at 3630.025 kb on + strand, within MPMX20_03442 at 3630.114 kb on + strand, within MPMX20_03442 at 3630.166 kb on - strand, within MPMX20_03442 at 3630.208 kb on - strand, within MPMX20_03442 at 3630.393 kb on - strand at 3630.525 kb on + strand, within MPMX20_03443 at 3630.601 kb on + strand, within MPMX20_03443 at 3630.690 kb on + strand, within MPMX20_03443 at 3630.690 kb on + strand, within MPMX20_03443 at 3630.700 kb on - strand, within MPMX20_03443 at 3630.731 kb on - strand, within MPMX20_03443 at 3630.733 kb on + strand, within MPMX20_03443 at 3630.735 kb on + strand, within MPMX20_03443 at 3630.735 kb on + strand, within MPMX20_03443 at 3630.741 kb on - strand, within MPMX20_03443 at 3630.743 kb on - strand, within MPMX20_03443 at 3630.765 kb on - strand, within MPMX20_03443 at 3631.056 kb on - strand at 3631.087 kb on + strand at 3631.111 kb on - strand at 3631.799 kb on - strand at 3631.881 kb on - strand at 3631.881 kb on - strand at 3631.940 kb on + strand at 3631.940 kb on + strand at 3631.948 kb on - strand at 3631.958 kb on - strand at 3632.017 kb on + strand at 3632.026 kb on - strand at 3632.026 kb on - strand at 3632.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,629,516 + -2.1 3,629,530 + -2.1 3,629,571 + -3.2 3,629,577 - -0.2 3,629,594 + +1.4 3,629,594 + -0.1 3,629,641 - MPMX20_03442 0.15 -0.1 3,629,641 - MPMX20_03442 0.15 -0.8 3,629,753 - MPMX20_03442 0.27 -1.0 3,629,818 + MPMX20_03442 0.33 +0.2 3,629,863 + MPMX20_03442 0.38 -0.5 3,629,899 + MPMX20_03442 0.42 +0.7 3,629,907 - MPMX20_03442 0.43 -0.0 3,629,909 + MPMX20_03442 0.43 +0.4 3,629,917 - MPMX20_03442 0.44 +1.5 3,630,025 + MPMX20_03442 0.55 -1.3 3,630,114 + MPMX20_03442 0.64 -1.6 3,630,166 - MPMX20_03442 0.70 -0.4 3,630,208 - MPMX20_03442 0.74 -1.1 3,630,393 - -2.1 3,630,525 + MPMX20_03443 0.11 -0.3 3,630,601 + MPMX20_03443 0.23 -2.9 3,630,690 + MPMX20_03443 0.37 +0.2 3,630,690 + MPMX20_03443 0.37 -0.6 3,630,700 - MPMX20_03443 0.38 -2.1 3,630,731 - MPMX20_03443 0.43 -1.1 3,630,733 + MPMX20_03443 0.43 -1.7 3,630,735 + MPMX20_03443 0.43 -0.5 3,630,735 + MPMX20_03443 0.43 +0.3 3,630,741 - MPMX20_03443 0.44 -0.8 3,630,743 - MPMX20_03443 0.45 +0.4 3,630,765 - MPMX20_03443 0.48 -1.8 3,631,056 - -2.1 3,631,087 + -0.3 3,631,111 - -1.1 3,631,799 - +0.9 3,631,881 - -0.0 3,631,881 - +4.3 3,631,940 + -2.2 3,631,940 + -3.4 3,631,948 - -1.3 3,631,958 - +1.3 3,632,017 + -0.6 3,632,026 - +1.0 3,632,026 - -1.1 3,632,027 - +3.1
Or see this region's nucleotide sequence