Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03443

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03441 and MPMX20_03442 overlap by 4 nucleotidesMPMX20_03442 and MPMX20_03443 overlap by 1 nucleotidesMPMX20_03443 and MPMX20_03444 are separated by 31 nucleotides MPMX20_03441: MPMX20_03441 - Protein RseC, at 3,629,026 to 3,629,502 _03441 MPMX20_03442: MPMX20_03442 - Sigma-E factor regulatory protein RseB, at 3,629,499 to 3,630,452 _03442 MPMX20_03443: MPMX20_03443 - Anti-sigma-E factor RseA, at 3,630,452 to 3,631,102 _03443 MPMX20_03444: MPMX20_03444 - ECF RNA polymerase sigma-E factor, at 3,631,134 to 3,631,709 _03444 Position (kb) 3630 3631 3632Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3629.516 kb on + strandat 3629.530 kb on + strandat 3629.571 kb on + strandat 3629.577 kb on - strandat 3629.594 kb on + strandat 3629.594 kb on + strandat 3629.641 kb on - strand, within MPMX20_03442at 3629.641 kb on - strand, within MPMX20_03442at 3629.753 kb on - strand, within MPMX20_03442at 3629.818 kb on + strand, within MPMX20_03442at 3629.863 kb on + strand, within MPMX20_03442at 3629.899 kb on + strand, within MPMX20_03442at 3629.907 kb on - strand, within MPMX20_03442at 3629.909 kb on + strand, within MPMX20_03442at 3629.917 kb on - strand, within MPMX20_03442at 3630.025 kb on + strand, within MPMX20_03442at 3630.114 kb on + strand, within MPMX20_03442at 3630.166 kb on - strand, within MPMX20_03442at 3630.208 kb on - strand, within MPMX20_03442at 3630.393 kb on - strandat 3630.525 kb on + strand, within MPMX20_03443at 3630.601 kb on + strand, within MPMX20_03443at 3630.690 kb on + strand, within MPMX20_03443at 3630.690 kb on + strand, within MPMX20_03443at 3630.700 kb on - strand, within MPMX20_03443at 3630.731 kb on - strand, within MPMX20_03443at 3630.733 kb on + strand, within MPMX20_03443at 3630.735 kb on + strand, within MPMX20_03443at 3630.735 kb on + strand, within MPMX20_03443at 3630.741 kb on - strand, within MPMX20_03443at 3630.743 kb on - strand, within MPMX20_03443at 3630.765 kb on - strand, within MPMX20_03443at 3631.056 kb on - strandat 3631.087 kb on + strandat 3631.111 kb on - strandat 3631.799 kb on - strandat 3631.881 kb on - strandat 3631.881 kb on - strandat 3631.940 kb on + strandat 3631.940 kb on + strandat 3631.948 kb on - strandat 3631.958 kb on - strandat 3632.017 kb on + strandat 3632.026 kb on - strandat 3632.026 kb on - strandat 3632.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,629,516 + -2.1
3,629,530 + -2.1
3,629,571 + -3.2
3,629,577 - -0.2
3,629,594 + +1.4
3,629,594 + -0.1
3,629,641 - MPMX20_03442 0.15 -0.1
3,629,641 - MPMX20_03442 0.15 -0.8
3,629,753 - MPMX20_03442 0.27 -1.0
3,629,818 + MPMX20_03442 0.33 +0.2
3,629,863 + MPMX20_03442 0.38 -0.5
3,629,899 + MPMX20_03442 0.42 +0.7
3,629,907 - MPMX20_03442 0.43 -0.0
3,629,909 + MPMX20_03442 0.43 +0.4
3,629,917 - MPMX20_03442 0.44 +1.5
3,630,025 + MPMX20_03442 0.55 -1.3
3,630,114 + MPMX20_03442 0.64 -1.6
3,630,166 - MPMX20_03442 0.70 -0.4
3,630,208 - MPMX20_03442 0.74 -1.1
3,630,393 - -2.1
3,630,525 + MPMX20_03443 0.11 -0.3
3,630,601 + MPMX20_03443 0.23 -2.9
3,630,690 + MPMX20_03443 0.37 +0.2
3,630,690 + MPMX20_03443 0.37 -0.6
3,630,700 - MPMX20_03443 0.38 -2.1
3,630,731 - MPMX20_03443 0.43 -1.1
3,630,733 + MPMX20_03443 0.43 -1.7
3,630,735 + MPMX20_03443 0.43 -0.5
3,630,735 + MPMX20_03443 0.43 +0.3
3,630,741 - MPMX20_03443 0.44 -0.8
3,630,743 - MPMX20_03443 0.45 +0.4
3,630,765 - MPMX20_03443 0.48 -1.8
3,631,056 - -2.1
3,631,087 + -0.3
3,631,111 - -1.1
3,631,799 - +0.9
3,631,881 - -0.0
3,631,881 - +4.3
3,631,940 + -2.2
3,631,940 + -3.4
3,631,948 - -1.3
3,631,958 - +1.3
3,632,017 + -0.6
3,632,026 - +1.0
3,632,026 - -1.1
3,632,027 - +3.1

Or see this region's nucleotide sequence