Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03310

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03308 and MPMX20_03309 are separated by 317 nucleotidesMPMX20_03309 and MPMX20_03310 are separated by 44 nucleotidesMPMX20_03310 and MPMX20_03311 are separated by 40 nucleotidesMPMX20_03311 and MPMX20_03312 are separated by 44 nucleotides MPMX20_03308: MPMX20_03308 - Cysteine synthase A, at 3,477,164 to 3,478,135 _03308 MPMX20_03309: MPMX20_03309 - Phosphocarrier protein HPr, at 3,478,453 to 3,478,710 _03309 MPMX20_03310: MPMX20_03310 - Phosphoenolpyruvate-protein phosphotransferase, at 3,478,755 to 3,480,482 _03310 MPMX20_03311: MPMX20_03311 - PTS system glucose-specific EIIA component, at 3,480,523 to 3,481,032 _03311 MPMX20_03312: MPMX20_03312 - Pyridoxine/pyridoxal/pyridoxamine kinase, at 3,481,077 to 3,481,913 _03312 Position (kb) 3478 3479 3480 3481Strain fitness (log2 ratio) -3 -2 -1 0 1at 3477.760 kb on - strand, within MPMX20_03308at 3477.781 kb on - strand, within MPMX20_03308at 3477.796 kb on - strand, within MPMX20_03308at 3477.820 kb on + strand, within MPMX20_03308at 3477.828 kb on - strand, within MPMX20_03308at 3477.876 kb on + strand, within MPMX20_03308at 3477.902 kb on + strand, within MPMX20_03308at 3477.947 kb on - strand, within MPMX20_03308at 3478.077 kb on - strandat 3478.089 kb on + strandat 3478.130 kb on + strandat 3478.221 kb on + strandat 3478.404 kb on + strandat 3478.412 kb on - strandat 3478.489 kb on + strand, within MPMX20_03309at 3478.490 kb on + strand, within MPMX20_03309at 3478.607 kb on + strand, within MPMX20_03309at 3478.615 kb on - strand, within MPMX20_03309at 3478.615 kb on - strand, within MPMX20_03309at 3478.623 kb on + strand, within MPMX20_03309at 3478.651 kb on + strand, within MPMX20_03309at 3478.675 kb on - strand, within MPMX20_03309at 3478.744 kb on + strandat 3478.928 kb on + strand, within MPMX20_03310at 3478.969 kb on + strand, within MPMX20_03310at 3479.045 kb on - strand, within MPMX20_03310at 3479.191 kb on + strand, within MPMX20_03310at 3479.203 kb on + strand, within MPMX20_03310at 3479.228 kb on + strand, within MPMX20_03310at 3479.246 kb on - strand, within MPMX20_03310at 3479.331 kb on - strand, within MPMX20_03310at 3479.341 kb on + strand, within MPMX20_03310at 3479.476 kb on + strand, within MPMX20_03310at 3479.558 kb on + strand, within MPMX20_03310at 3479.632 kb on - strand, within MPMX20_03310at 3479.729 kb on - strand, within MPMX20_03310at 3479.747 kb on - strand, within MPMX20_03310at 3479.858 kb on + strand, within MPMX20_03310at 3479.968 kb on - strand, within MPMX20_03310at 3480.005 kb on - strand, within MPMX20_03310at 3480.057 kb on - strand, within MPMX20_03310at 3480.126 kb on + strand, within MPMX20_03310at 3480.133 kb on + strand, within MPMX20_03310at 3480.133 kb on + strand, within MPMX20_03310at 3480.392 kb on + strandat 3480.392 kb on + strandat 3480.392 kb on + strandat 3481.088 kb on + strandat 3481.088 kb on + strandat 3481.096 kb on - strandat 3481.096 kb on - strandat 3481.113 kb on - strandat 3481.202 kb on + strand, within MPMX20_03312at 3481.202 kb on + strand, within MPMX20_03312at 3481.215 kb on - strand, within MPMX20_03312at 3481.256 kb on + strand, within MPMX20_03312at 3481.263 kb on + strand, within MPMX20_03312at 3481.265 kb on + strand, within MPMX20_03312at 3481.332 kb on + strand, within MPMX20_03312at 3481.332 kb on + strand, within MPMX20_03312at 3481.332 kb on + strand, within MPMX20_03312at 3481.376 kb on - strand, within MPMX20_03312at 3481.417 kb on - strand, within MPMX20_03312at 3481.447 kb on - strand, within MPMX20_03312

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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3,477,760 - MPMX20_03308 0.61 -0.4
3,477,781 - MPMX20_03308 0.63 -0.0
3,477,796 - MPMX20_03308 0.65 -1.7
3,477,820 + MPMX20_03308 0.67 -0.0
3,477,828 - MPMX20_03308 0.68 -1.8
3,477,876 + MPMX20_03308 0.73 -0.3
3,477,902 + MPMX20_03308 0.76 -1.7
3,477,947 - MPMX20_03308 0.81 -1.4
3,478,077 - -3.6
3,478,089 + +0.1
3,478,130 + -1.0
3,478,221 + -2.5
3,478,404 + -0.9
3,478,412 - -2.0
3,478,489 + MPMX20_03309 0.14 -0.0
3,478,490 + MPMX20_03309 0.14 -1.8
3,478,607 + MPMX20_03309 0.60 -2.9
3,478,615 - MPMX20_03309 0.63 -2.9
3,478,615 - MPMX20_03309 0.63 -1.3
3,478,623 + MPMX20_03309 0.66 -1.3
3,478,651 + MPMX20_03309 0.77 -1.6
3,478,675 - MPMX20_03309 0.86 -1.2
3,478,744 + -1.0
3,478,928 + MPMX20_03310 0.10 -1.0
3,478,969 + MPMX20_03310 0.12 -1.6
3,479,045 - MPMX20_03310 0.17 -2.7
3,479,191 + MPMX20_03310 0.25 -1.3
3,479,203 + MPMX20_03310 0.26 -2.0
3,479,228 + MPMX20_03310 0.27 -0.8
3,479,246 - MPMX20_03310 0.28 -1.6
3,479,331 - MPMX20_03310 0.33 -2.2
3,479,341 + MPMX20_03310 0.34 -0.0
3,479,476 + MPMX20_03310 0.42 -1.5
3,479,558 + MPMX20_03310 0.46 -1.5
3,479,632 - MPMX20_03310 0.51 -3.0
3,479,729 - MPMX20_03310 0.56 -2.8
3,479,747 - MPMX20_03310 0.57 -1.6
3,479,858 + MPMX20_03310 0.64 -1.8
3,479,968 - MPMX20_03310 0.70 -2.2
3,480,005 - MPMX20_03310 0.72 -1.3
3,480,057 - MPMX20_03310 0.75 -2.2
3,480,126 + MPMX20_03310 0.79 -2.4
3,480,133 + MPMX20_03310 0.80 -2.9
3,480,133 + MPMX20_03310 0.80 -2.5
3,480,392 + -1.8
3,480,392 + -2.0
3,480,392 + -2.3
3,481,088 + -1.5
3,481,088 + +0.5
3,481,096 - -0.0
3,481,096 - +0.1
3,481,113 - -0.6
3,481,202 + MPMX20_03312 0.15 +0.1
3,481,202 + MPMX20_03312 0.15 +0.5
3,481,215 - MPMX20_03312 0.16 +1.2
3,481,256 + MPMX20_03312 0.21 +0.2
3,481,263 + MPMX20_03312 0.22 +1.5
3,481,265 + MPMX20_03312 0.22 -0.1
3,481,332 + MPMX20_03312 0.30 -0.3
3,481,332 + MPMX20_03312 0.30 -0.5
3,481,332 + MPMX20_03312 0.30 +1.7
3,481,376 - MPMX20_03312 0.36 -0.6
3,481,417 - MPMX20_03312 0.41 +0.4
3,481,447 - MPMX20_03312 0.44 +0.1

Or see this region's nucleotide sequence