Experiment: D-Xylose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16255 and HMPREF1058_RS16250 are separated by 26 nucleotides HMPREF1058_RS16250 and HMPREF1058_RS16245 overlap by 1 nucleotides HMPREF1058_RS16245 and HMPREF1058_RS16240 are separated by 77 nucleotides
HMPREF1058_RS16255: HMPREF1058_RS16255 - isochorismate synthase, at 721,335 to 722,477
_RS16255
HMPREF1058_RS16250: HMPREF1058_RS16250 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 722,504 to 724,177
_RS16250
HMPREF1058_RS16245: HMPREF1058_RS16245 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 724,177 to 724,998
_RS16245
HMPREF1058_RS16240: HMPREF1058_RS16240 - o-succinylbenzoate synthase, at 725,076 to 726,131
_RS16240
Position (kb) 722
723
724
725 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 721.550 kb on - strand, within HMPREF1058_RS16255 at 721.699 kb on - strand, within HMPREF1058_RS16255 at 721.701 kb on - strand, within HMPREF1058_RS16255 at 721.854 kb on + strand, within HMPREF1058_RS16255 at 721.854 kb on + strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 722.022 kb on + strand, within HMPREF1058_RS16255 at 722.022 kb on + strand, within HMPREF1058_RS16255 at 722.023 kb on - strand, within HMPREF1058_RS16255 at 722.023 kb on - strand, within HMPREF1058_RS16255 at 722.034 kb on + strand, within HMPREF1058_RS16255 at 722.090 kb on + strand, within HMPREF1058_RS16255 at 722.114 kb on - strand, within HMPREF1058_RS16255 at 722.159 kb on + strand, within HMPREF1058_RS16255 at 722.160 kb on - strand, within HMPREF1058_RS16255 at 722.266 kb on - strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.317 kb on - strand, within HMPREF1058_RS16255 at 722.317 kb on - strand, within HMPREF1058_RS16255 at 722.467 kb on + strand at 722.476 kb on - strand at 722.503 kb on - strand at 722.507 kb on + strand at 722.526 kb on + strand at 722.607 kb on + strand at 722.608 kb on - strand at 722.611 kb on + strand at 722.612 kb on - strand at 722.625 kb on + strand at 722.626 kb on - strand at 722.829 kb on + strand, within HMPREF1058_RS16250 at 722.910 kb on + strand, within HMPREF1058_RS16250 at 722.914 kb on + strand, within HMPREF1058_RS16250 at 722.914 kb on + strand, within HMPREF1058_RS16250 at 722.994 kb on + strand, within HMPREF1058_RS16250 at 722.994 kb on + strand, within HMPREF1058_RS16250 at 722.995 kb on - strand, within HMPREF1058_RS16250 at 722.995 kb on - strand, within HMPREF1058_RS16250 at 722.995 kb on - strand, within HMPREF1058_RS16250 at 722.998 kb on + strand, within HMPREF1058_RS16250 at 723.057 kb on + strand, within HMPREF1058_RS16250 at 723.107 kb on - strand, within HMPREF1058_RS16250 at 723.107 kb on - strand, within HMPREF1058_RS16250 at 723.212 kb on - strand, within HMPREF1058_RS16250 at 723.293 kb on + strand, within HMPREF1058_RS16250 at 723.337 kb on - strand, within HMPREF1058_RS16250 at 723.343 kb on + strand, within HMPREF1058_RS16250 at 723.344 kb on - strand, within HMPREF1058_RS16250 at 723.590 kb on + strand, within HMPREF1058_RS16250 at 723.741 kb on + strand, within HMPREF1058_RS16250 at 723.827 kb on + strand, within HMPREF1058_RS16250 at 723.827 kb on + strand, within HMPREF1058_RS16250 at 723.858 kb on - strand at 723.972 kb on - strand, within HMPREF1058_RS16250 at 724.010 kb on - strand at 724.145 kb on + strand at 724.146 kb on - strand at 724.146 kb on - strand at 724.473 kb on - strand, within HMPREF1058_RS16245 at 724.473 kb on - strand, within HMPREF1058_RS16245 at 724.497 kb on + strand, within HMPREF1058_RS16245 at 724.616 kb on + strand, within HMPREF1058_RS16245 at 724.877 kb on + strand, within HMPREF1058_RS16245 at 724.878 kb on - strand, within HMPREF1058_RS16245 at 724.909 kb on + strand, within HMPREF1058_RS16245 at 724.909 kb on + strand, within HMPREF1058_RS16245 at 724.910 kb on - strand, within HMPREF1058_RS16245 at 725.143 kb on + strand at 725.143 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.147 kb on + strand at 725.161 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 2.5 mg/ml (C) remove 721,550 - HMPREF1058_RS16255 0.19 -1.2 721,699 - HMPREF1058_RS16255 0.32 -2.8 721,701 - HMPREF1058_RS16255 0.32 -0.5 721,854 + HMPREF1058_RS16255 0.45 -3.3 721,854 + HMPREF1058_RS16255 0.45 -3.4 721,855 - HMPREF1058_RS16255 0.45 -0.9 721,855 - HMPREF1058_RS16255 0.45 -0.9 721,855 - HMPREF1058_RS16255 0.45 -2.1 722,022 + HMPREF1058_RS16255 0.60 -2.9 722,022 + HMPREF1058_RS16255 0.60 -3.4 722,023 - HMPREF1058_RS16255 0.60 -2.7 722,023 - HMPREF1058_RS16255 0.60 -3.6 722,034 + HMPREF1058_RS16255 0.61 -3.2 722,090 + HMPREF1058_RS16255 0.66 -4.2 722,114 - HMPREF1058_RS16255 0.68 -2.1 722,159 + HMPREF1058_RS16255 0.72 -3.4 722,160 - HMPREF1058_RS16255 0.72 -4.0 722,266 - HMPREF1058_RS16255 0.81 -4.3 722,316 + HMPREF1058_RS16255 0.86 -2.4 722,316 + HMPREF1058_RS16255 0.86 -3.2 722,316 + HMPREF1058_RS16255 0.86 -3.5 722,317 - HMPREF1058_RS16255 0.86 -2.7 722,317 - HMPREF1058_RS16255 0.86 -3.0 722,467 + -1.9 722,476 - -4.1 722,503 - -3.0 722,507 + -2.8 722,526 + -2.7 722,607 + -2.1 722,608 - -1.5 722,611 + -2.3 722,612 - -1.9 722,625 + -2.3 722,626 - -1.7 722,829 + HMPREF1058_RS16250 0.19 -1.7 722,910 + HMPREF1058_RS16250 0.24 -2.4 722,914 + HMPREF1058_RS16250 0.24 -2.3 722,914 + HMPREF1058_RS16250 0.24 -4.3 722,994 + HMPREF1058_RS16250 0.29 -0.5 722,994 + HMPREF1058_RS16250 0.29 -2.8 722,995 - HMPREF1058_RS16250 0.29 -1.8 722,995 - HMPREF1058_RS16250 0.29 -1.9 722,995 - HMPREF1058_RS16250 0.29 -2.8 722,998 + HMPREF1058_RS16250 0.30 -0.9 723,057 + HMPREF1058_RS16250 0.33 -2.6 723,107 - HMPREF1058_RS16250 0.36 -1.5 723,107 - HMPREF1058_RS16250 0.36 -1.4 723,212 - HMPREF1058_RS16250 0.42 -2.7 723,293 + HMPREF1058_RS16250 0.47 -3.9 723,337 - HMPREF1058_RS16250 0.50 -3.0 723,343 + HMPREF1058_RS16250 0.50 -1.9 723,344 - HMPREF1058_RS16250 0.50 -1.7 723,590 + HMPREF1058_RS16250 0.65 -1.7 723,741 + HMPREF1058_RS16250 0.74 -2.7 723,827 + HMPREF1058_RS16250 0.79 -2.8 723,827 + HMPREF1058_RS16250 0.79 -1.5 723,858 - -1.2 723,972 - HMPREF1058_RS16250 0.88 -0.9 724,010 - -2.5 724,145 + -1.8 724,146 - -2.0 724,146 - -1.5 724,473 - HMPREF1058_RS16245 0.36 +0.4 724,473 - HMPREF1058_RS16245 0.36 +0.5 724,497 + HMPREF1058_RS16245 0.39 +0.7 724,616 + HMPREF1058_RS16245 0.53 +0.5 724,877 + HMPREF1058_RS16245 0.85 +0.3 724,878 - HMPREF1058_RS16245 0.85 +1.0 724,909 + HMPREF1058_RS16245 0.89 +0.7 724,909 + HMPREF1058_RS16245 0.89 +0.8 724,910 - HMPREF1058_RS16245 0.89 -0.3 725,143 + +0.4 725,143 + -0.1 725,145 + +0.4 725,145 + +1.6 725,145 + -0.2 725,147 + +1.2 725,161 + +0.7
Or see this region's nucleotide sequence