Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16775 and HMPREF1058_RS16770 are separated by 34 nucleotides HMPREF1058_RS16770 and HMPREF1058_RS16765 are separated by 157 nucleotides HMPREF1058_RS16765 and HMPREF1058_RS16760 are separated by 20 nucleotides
HMPREF1058_RS16775: HMPREF1058_RS16775 - tRNA pseudouridine(38-40) synthase TruA, at 600,427 to 601,200
_RS16775
HMPREF1058_RS16770: HMPREF1058_RS16770 - hypothetical protein, at 601,235 to 601,909
_RS16770
HMPREF1058_RS16765: HMPREF1058_RS16765 - PhoH family protein, at 602,067 to 603,071
_RS16765
HMPREF1058_RS16760: HMPREF1058_RS16760 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 603,092 to 604,036
_RS16760
Position (kb) 602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 601.069 kb on + strand, within HMPREF1058_RS16775 at 601.123 kb on + strand at 601.184 kb on + strand at 601.247 kb on + strand at 601.247 kb on + strand at 601.248 kb on - strand at 601.279 kb on + strand at 601.279 kb on + strand at 601.280 kb on - strand at 601.351 kb on + strand, within HMPREF1058_RS16770 at 601.363 kb on + strand, within HMPREF1058_RS16770 at 601.391 kb on - strand, within HMPREF1058_RS16770 at 601.571 kb on + strand, within HMPREF1058_RS16770 at 601.572 kb on - strand, within HMPREF1058_RS16770 at 601.572 kb on - strand, within HMPREF1058_RS16770 at 601.572 kb on - strand, within HMPREF1058_RS16770 at 601.768 kb on + strand, within HMPREF1058_RS16770 at 601.777 kb on - strand, within HMPREF1058_RS16770 at 601.781 kb on - strand, within HMPREF1058_RS16770 at 601.785 kb on - strand, within HMPREF1058_RS16770 at 601.794 kb on - strand, within HMPREF1058_RS16770 at 601.794 kb on - strand, within HMPREF1058_RS16770 at 601.900 kb on + strand at 601.910 kb on - strand at 601.919 kb on - strand at 602.032 kb on + strand at 602.083 kb on + strand at 602.089 kb on + strand at 602.110 kb on + strand at 602.242 kb on + strand, within HMPREF1058_RS16765 at 602.242 kb on + strand, within HMPREF1058_RS16765 at 602.329 kb on + strand, within HMPREF1058_RS16765 at 602.329 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.353 kb on + strand, within HMPREF1058_RS16765 at 602.432 kb on + strand, within HMPREF1058_RS16765 at 602.470 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.611 kb on + strand, within HMPREF1058_RS16765 at 602.632 kb on + strand, within HMPREF1058_RS16765 at 602.639 kb on + strand, within HMPREF1058_RS16765 at 602.639 kb on + strand, within HMPREF1058_RS16765 at 602.708 kb on + strand, within HMPREF1058_RS16765 at 602.780 kb on + strand, within HMPREF1058_RS16765 at 602.845 kb on + strand, within HMPREF1058_RS16765 at 602.947 kb on + strand, within HMPREF1058_RS16765 at 603.097 kb on + strand at 603.168 kb on + strand at 603.201 kb on + strand, within HMPREF1058_RS16760 at 603.214 kb on + strand, within HMPREF1058_RS16760 at 603.231 kb on + strand, within HMPREF1058_RS16760 at 603.364 kb on + strand, within HMPREF1058_RS16760 at 603.684 kb on + strand, within HMPREF1058_RS16760 at 603.721 kb on + strand, within HMPREF1058_RS16760 at 603.725 kb on + strand, within HMPREF1058_RS16760 at 603.826 kb on + strand, within HMPREF1058_RS16760 at 603.999 kb on + strand at 604.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 5 mg/ml (C) remove 601,069 + HMPREF1058_RS16775 0.83 -0.2 601,123 + -0.7 601,184 + -1.9 601,247 + -0.0 601,247 + -1.6 601,248 - -0.1 601,279 + +0.3 601,279 + -1.7 601,280 - -0.8 601,351 + HMPREF1058_RS16770 0.17 -0.4 601,363 + HMPREF1058_RS16770 0.19 -0.4 601,391 - HMPREF1058_RS16770 0.23 -1.1 601,571 + HMPREF1058_RS16770 0.50 +1.1 601,572 - HMPREF1058_RS16770 0.50 +0.0 601,572 - HMPREF1058_RS16770 0.50 +1.3 601,572 - HMPREF1058_RS16770 0.50 -1.2 601,768 + HMPREF1058_RS16770 0.79 -0.1 601,777 - HMPREF1058_RS16770 0.80 +0.0 601,781 - HMPREF1058_RS16770 0.81 -0.6 601,785 - HMPREF1058_RS16770 0.81 +0.3 601,794 - HMPREF1058_RS16770 0.83 +4.9 601,794 - HMPREF1058_RS16770 0.83 +0.8 601,900 + -0.3 601,910 - -0.2 601,919 - +0.1 602,032 + -0.7 602,083 + +0.7 602,089 + +1.2 602,110 + +1.0 602,242 + HMPREF1058_RS16765 0.17 +0.2 602,242 + HMPREF1058_RS16765 0.17 +0.4 602,329 + HMPREF1058_RS16765 0.26 +2.9 602,329 + HMPREF1058_RS16765 0.26 +2.4 602,348 + HMPREF1058_RS16765 0.28 +0.6 602,348 + HMPREF1058_RS16765 0.28 +0.5 602,348 + HMPREF1058_RS16765 0.28 +1.1 602,353 + HMPREF1058_RS16765 0.28 +1.9 602,432 + HMPREF1058_RS16765 0.36 +1.6 602,470 + HMPREF1058_RS16765 0.40 +0.0 602,472 + HMPREF1058_RS16765 0.40 -1.3 602,472 + HMPREF1058_RS16765 0.40 +0.2 602,472 + HMPREF1058_RS16765 0.40 -0.2 602,611 + HMPREF1058_RS16765 0.54 +2.2 602,632 + HMPREF1058_RS16765 0.56 +0.3 602,639 + HMPREF1058_RS16765 0.57 -0.1 602,639 + HMPREF1058_RS16765 0.57 -0.5 602,708 + HMPREF1058_RS16765 0.64 +4.2 602,780 + HMPREF1058_RS16765 0.71 +0.6 602,845 + HMPREF1058_RS16765 0.77 +0.7 602,947 + HMPREF1058_RS16765 0.88 +2.9 603,097 + -0.9 603,168 + -1.3 603,201 + HMPREF1058_RS16760 0.12 -0.7 603,214 + HMPREF1058_RS16760 0.13 -0.9 603,231 + HMPREF1058_RS16760 0.15 -0.1 603,364 + HMPREF1058_RS16760 0.29 -0.9 603,684 + HMPREF1058_RS16760 0.63 -2.2 603,721 + HMPREF1058_RS16760 0.67 -1.7 603,725 + HMPREF1058_RS16760 0.67 -1.9 603,826 + HMPREF1058_RS16760 0.78 -2.1 603,999 + -2.3 604,059 + -0.6
Or see this region's nucleotide sequence