Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03300

Experiment: D-Glucose 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03305 and HMPREF1058_RS03300 are separated by 108 nucleotidesHMPREF1058_RS03300 and HMPREF1058_RS03295 are separated by 385 nucleotidesHMPREF1058_RS03295 and HMPREF1058_RS03290 overlap by 11 nucleotides HMPREF1058_RS03305: HMPREF1058_RS03305 - UvrD-helicase domain-containing protein, at 310,122 to 312,512 _RS03305 HMPREF1058_RS03300: HMPREF1058_RS03300 - superoxide dismutase, at 312,621 to 313,238 _RS03300 HMPREF1058_RS03295: HMPREF1058_RS03295 - sulfur carrier protein ThiS, at 313,624 to 313,824 _RS03295 HMPREF1058_RS03290: HMPREF1058_RS03290 - thiamine phosphate synthase, at 313,814 to 314,440 _RS03290 Position (kb) 312 313 314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 311.689 kb on + strand, within HMPREF1058_RS03305at 311.689 kb on + strand, within HMPREF1058_RS03305at 311.690 kb on - strand, within HMPREF1058_RS03305at 311.690 kb on - strand, within HMPREF1058_RS03305at 311.690 kb on - strand, within HMPREF1058_RS03305at 311.710 kb on - strand, within HMPREF1058_RS03305at 311.711 kb on + strand, within HMPREF1058_RS03305at 311.712 kb on - strand, within HMPREF1058_RS03305at 311.712 kb on - strand, within HMPREF1058_RS03305at 311.744 kb on + strand, within HMPREF1058_RS03305at 311.872 kb on + strand, within HMPREF1058_RS03305at 311.911 kb on + strand, within HMPREF1058_RS03305at 311.915 kb on + strand, within HMPREF1058_RS03305at 311.915 kb on + strandat 311.915 kb on + strand, within HMPREF1058_RS03305at 311.915 kb on + strand, within HMPREF1058_RS03305at 311.916 kb on - strand, within HMPREF1058_RS03305at 311.917 kb on + strandat 312.019 kb on + strand, within HMPREF1058_RS03305at 312.025 kb on + strandat 312.026 kb on - strand, within HMPREF1058_RS03305at 312.047 kb on - strand, within HMPREF1058_RS03305at 312.047 kb on - strand, within HMPREF1058_RS03305at 312.096 kb on + strand, within HMPREF1058_RS03305at 312.189 kb on - strand, within HMPREF1058_RS03305at 312.201 kb on - strand, within HMPREF1058_RS03305at 312.302 kb on + strandat 312.303 kb on - strandat 312.365 kb on + strandat 312.395 kb on + strandat 312.499 kb on - strandat 312.588 kb on - strandat 312.627 kb on - strandat 312.628 kb on + strandat 312.629 kb on - strandat 312.643 kb on + strandat 312.709 kb on + strand, within HMPREF1058_RS03300at 312.725 kb on + strand, within HMPREF1058_RS03300at 312.728 kb on - strand, within HMPREF1058_RS03300at 312.732 kb on + strand, within HMPREF1058_RS03300at 312.763 kb on + strand, within HMPREF1058_RS03300at 312.763 kb on + strand, within HMPREF1058_RS03300at 312.850 kb on + strand, within HMPREF1058_RS03300at 312.882 kb on - strand, within HMPREF1058_RS03300at 312.886 kb on + strand, within HMPREF1058_RS03300at 313.063 kb on + strand, within HMPREF1058_RS03300at 313.063 kb on + strand, within HMPREF1058_RS03300at 313.064 kb on - strand, within HMPREF1058_RS03300at 313.064 kb on - strand, within HMPREF1058_RS03300at 313.068 kb on - strand, within HMPREF1058_RS03300at 313.068 kb on - strand, within HMPREF1058_RS03300at 313.135 kb on + strandat 313.136 kb on - strand, within HMPREF1058_RS03300at 313.149 kb on + strand, within HMPREF1058_RS03300at 313.149 kb on + strand, within HMPREF1058_RS03300at 313.150 kb on - strand, within HMPREF1058_RS03300at 313.185 kb on - strandat 313.219 kb on + strandat 313.219 kb on + strandat 313.220 kb on - strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.237 kb on - strandat 313.252 kb on + strandat 313.253 kb on - strandat 313.254 kb on + strandat 313.254 kb on + strandat 313.254 kb on + strandat 313.254 kb on + strandat 313.261 kb on + strandat 313.261 kb on + strandat 313.262 kb on - strandat 313.325 kb on + strandat 313.325 kb on + strandat 313.335 kb on - strandat 313.335 kb on - strandat 313.358 kb on + strandat 313.359 kb on - strandat 313.378 kb on + strandat 313.409 kb on + strandat 313.425 kb on - strandat 313.461 kb on + strandat 313.462 kb on - strandat 313.505 kb on + strandat 313.507 kb on + strandat 313.507 kb on + strandat 313.550 kb on + strandat 313.618 kb on + strandat 313.619 kb on - strandat 313.620 kb on + strandat 313.621 kb on - strandat 313.621 kb on - strandat 313.623 kb on + strandat 313.659 kb on - strand, within HMPREF1058_RS03295at 313.754 kb on + strand, within HMPREF1058_RS03295at 313.865 kb on + strandat 313.866 kb on - strandat 313.866 kb on - strandat 313.866 kb on - strandat 313.871 kb on + strandat 313.875 kb on - strandat 313.924 kb on - strand, within HMPREF1058_RS03290at 314.106 kb on + strand, within HMPREF1058_RS03290at 314.107 kb on - strand, within HMPREF1058_RS03290at 314.155 kb on - strand, within HMPREF1058_RS03290at 314.183 kb on + strand, within HMPREF1058_RS03290at 314.184 kb on - strand, within HMPREF1058_RS03290

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 5 mg/ml (C)
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311,689 + HMPREF1058_RS03305 0.66 -1.3
311,689 + HMPREF1058_RS03305 0.66 +1.1
311,690 - HMPREF1058_RS03305 0.66 +0.1
311,690 - HMPREF1058_RS03305 0.66 -0.4
311,690 - HMPREF1058_RS03305 0.66 -0.2
311,710 - HMPREF1058_RS03305 0.66 +1.8
311,711 + HMPREF1058_RS03305 0.66 -0.7
311,712 - HMPREF1058_RS03305 0.66 +3.2
311,712 - HMPREF1058_RS03305 0.66 +0.4
311,744 + HMPREF1058_RS03305 0.68 +2.8
311,872 + HMPREF1058_RS03305 0.73 -1.5
311,911 + HMPREF1058_RS03305 0.75 -1.9
311,915 + HMPREF1058_RS03305 0.75 -1.9
311,915 + -0.2
311,915 + HMPREF1058_RS03305 0.75 +0.3
311,915 + HMPREF1058_RS03305 0.75 -0.3
311,916 - HMPREF1058_RS03305 0.75 +0.9
311,917 + +0.3
312,019 + HMPREF1058_RS03305 0.79 -1.0
312,025 + -0.7
312,026 - HMPREF1058_RS03305 0.80 +0.8
312,047 - HMPREF1058_RS03305 0.81 +0.1
312,047 - HMPREF1058_RS03305 0.81 -1.9
312,096 + HMPREF1058_RS03305 0.83 -1.8
312,189 - HMPREF1058_RS03305 0.86 -1.0
312,201 - HMPREF1058_RS03305 0.87 +1.5
312,302 + -0.5
312,303 - +1.8
312,365 + -1.4
312,395 + -1.2
312,499 - -0.0
312,588 - +1.3
312,627 - -0.2
312,628 + +0.6
312,629 - -0.5
312,643 + +1.6
312,709 + HMPREF1058_RS03300 0.14 +1.9
312,725 + HMPREF1058_RS03300 0.17 +1.7
312,728 - HMPREF1058_RS03300 0.17 -1.1
312,732 + HMPREF1058_RS03300 0.18 +2.3
312,763 + HMPREF1058_RS03300 0.23 +1.0
312,763 + HMPREF1058_RS03300 0.23 +1.1
312,850 + HMPREF1058_RS03300 0.37 +0.4
312,882 - HMPREF1058_RS03300 0.42 +0.7
312,886 + HMPREF1058_RS03300 0.43 +1.5
313,063 + HMPREF1058_RS03300 0.72 +0.9
313,063 + HMPREF1058_RS03300 0.72 +0.7
313,064 - HMPREF1058_RS03300 0.72 +1.8
313,064 - HMPREF1058_RS03300 0.72 -1.0
313,068 - HMPREF1058_RS03300 0.72 +0.6
313,068 - HMPREF1058_RS03300 0.72 +0.4
313,135 + +1.4
313,136 - HMPREF1058_RS03300 0.83 +3.2
313,149 + HMPREF1058_RS03300 0.85 +3.4
313,149 + HMPREF1058_RS03300 0.85 +1.5
313,150 - HMPREF1058_RS03300 0.86 +0.6
313,185 - +1.7
313,219 + +0.7
313,219 + +1.8
313,220 - -1.2
313,235 - +1.3
313,235 - +0.5
313,237 - +0.3
313,252 + +0.8
313,253 - -0.3
313,254 + +4.3
313,254 + +0.9
313,254 + +0.8
313,254 + +1.3
313,261 + +1.5
313,261 + +1.8
313,262 - +1.5
313,325 + +0.6
313,325 + +1.1
313,335 - +0.1
313,335 - +0.0
313,358 + +0.8
313,359 - -2.4
313,378 + +1.1
313,409 + -0.1
313,425 - +0.4
313,461 + +0.1
313,462 - -2.1
313,505 + -1.1
313,507 + +0.8
313,507 + -0.2
313,550 + +0.7
313,618 + +0.8
313,619 - -2.0
313,620 + -3.2
313,621 - -2.0
313,621 - -0.7
313,623 + -0.7
313,659 - HMPREF1058_RS03295 0.17 -0.6
313,754 + HMPREF1058_RS03295 0.65 -1.8
313,865 + -0.7
313,866 - -2.0
313,866 - -3.1
313,866 - -1.4
313,871 + -2.0
313,875 - -2.0
313,924 - HMPREF1058_RS03290 0.18 -1.5
314,106 + HMPREF1058_RS03290 0.47 -2.6
314,107 - HMPREF1058_RS03290 0.47 -3.8
314,155 - HMPREF1058_RS03290 0.54 -3.1
314,183 + HMPREF1058_RS03290 0.59 -1.9
314,184 - HMPREF1058_RS03290 0.59 -0.3

Or see this region's nucleotide sequence