Experiment: D-Glucose 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12765 and HMPREF1058_RS12760 overlap by 50 nucleotides HMPREF1058_RS12760 and HMPREF1058_RS12755 are separated by 138 nucleotides HMPREF1058_RS12755 and HMPREF1058_RS12750 are separated by 77 nucleotides
HMPREF1058_RS12765: HMPREF1058_RS12765 - NUDIX domain-containing protein, at 36,656 to 37,546
_RS12765
HMPREF1058_RS12760: HMPREF1058_RS12760 - hypothetical protein, at 37,497 to 38,153
_RS12760
HMPREF1058_RS12755: HMPREF1058_RS12755 - hypothetical protein, at 38,292 to 41,141
_RS12755
HMPREF1058_RS12750: HMPREF1058_RS12750 - helix-turn-helix transcriptional regulator, at 41,219 to 41,707
_RS12750
Position (kb) 38
39
40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 37.293 kb on + strand, within HMPREF1058_RS12765 at 37.293 kb on + strand, within HMPREF1058_RS12765 at 37.293 kb on + strand, within HMPREF1058_RS12765 at 37.303 kb on + strand, within HMPREF1058_RS12765 at 37.320 kb on + strand, within HMPREF1058_RS12765 at 37.327 kb on + strand, within HMPREF1058_RS12765 at 37.327 kb on + strand, within HMPREF1058_RS12765 at 37.328 kb on - strand, within HMPREF1058_RS12765 at 37.398 kb on - strand, within HMPREF1058_RS12765 at 37.398 kb on - strand, within HMPREF1058_RS12765 at 37.441 kb on - strand, within HMPREF1058_RS12765 at 37.458 kb on - strand at 37.490 kb on + strand at 37.491 kb on - strand at 37.498 kb on + strand at 37.499 kb on - strand at 37.626 kb on - strand, within HMPREF1058_RS12760 at 37.632 kb on - strand, within HMPREF1058_RS12760 at 37.633 kb on + strand, within HMPREF1058_RS12760 at 37.638 kb on - strand, within HMPREF1058_RS12760 at 37.670 kb on + strand, within HMPREF1058_RS12760 at 37.748 kb on + strand, within HMPREF1058_RS12760 at 37.748 kb on + strand, within HMPREF1058_RS12760 at 37.777 kb on + strand, within HMPREF1058_RS12760 at 37.809 kb on + strand, within HMPREF1058_RS12760 at 37.810 kb on - strand, within HMPREF1058_RS12760 at 37.810 kb on - strand, within HMPREF1058_RS12760 at 37.815 kb on - strand, within HMPREF1058_RS12760 at 37.854 kb on + strand, within HMPREF1058_RS12760 at 37.854 kb on + strand, within HMPREF1058_RS12760 at 37.854 kb on + strand, within HMPREF1058_RS12760 at 37.858 kb on + strand, within HMPREF1058_RS12760 at 37.858 kb on + strand, within HMPREF1058_RS12760 at 37.991 kb on + strand, within HMPREF1058_RS12760 at 38.025 kb on + strand, within HMPREF1058_RS12760 at 38.026 kb on - strand, within HMPREF1058_RS12760 at 38.026 kb on - strand, within HMPREF1058_RS12760 at 38.026 kb on - strand, within HMPREF1058_RS12760 at 38.048 kb on - strand, within HMPREF1058_RS12760 at 38.048 kb on - strand, within HMPREF1058_RS12760 at 38.102 kb on + strand at 38.110 kb on - strand at 38.154 kb on + strand at 38.166 kb on - strand at 38.266 kb on + strand at 38.266 kb on + strand at 38.311 kb on - strand at 38.354 kb on + strand at 38.354 kb on + strand at 38.356 kb on + strand at 38.356 kb on + strand at 38.357 kb on - strand at 38.374 kb on - strand at 38.385 kb on - strand at 38.386 kb on + strand at 38.386 kb on + strand at 38.386 kb on + strand at 38.389 kb on - strand at 38.389 kb on - strand at 38.389 kb on - strand at 38.393 kb on + strand at 38.538 kb on + strand at 38.644 kb on - strand, within HMPREF1058_RS12755 at 38.700 kb on - strand, within HMPREF1058_RS12755 at 38.703 kb on - strand, within HMPREF1058_RS12755 at 38.703 kb on - strand, within HMPREF1058_RS12755 at 38.704 kb on + strand, within HMPREF1058_RS12755 at 38.705 kb on - strand, within HMPREF1058_RS12755 at 38.738 kb on + strand, within HMPREF1058_RS12755 at 38.945 kb on + strand, within HMPREF1058_RS12755 at 38.993 kb on - strand, within HMPREF1058_RS12755 at 38.993 kb on - strand, within HMPREF1058_RS12755 at 39.008 kb on - strand, within HMPREF1058_RS12755 at 39.011 kb on + strand, within HMPREF1058_RS12755 at 39.033 kb on - strand, within HMPREF1058_RS12755 at 39.034 kb on + strand, within HMPREF1058_RS12755 at 39.035 kb on - strand, within HMPREF1058_RS12755 at 39.060 kb on - strand, within HMPREF1058_RS12755 at 39.080 kb on + strand, within HMPREF1058_RS12755 at 39.081 kb on - strand, within HMPREF1058_RS12755 at 39.083 kb on - strand, within HMPREF1058_RS12755 at 39.112 kb on + strand, within HMPREF1058_RS12755 at 39.112 kb on + strand, within HMPREF1058_RS12755 at 39.112 kb on + strand, within HMPREF1058_RS12755 at 39.113 kb on - strand, within HMPREF1058_RS12755 at 39.170 kb on - strand, within HMPREF1058_RS12755 at 39.341 kb on + strand, within HMPREF1058_RS12755 at 39.347 kb on - strand, within HMPREF1058_RS12755 at 39.447 kb on - strand, within HMPREF1058_RS12755 at 39.460 kb on - strand, within HMPREF1058_RS12755 at 39.515 kb on + strand, within HMPREF1058_RS12755 at 39.529 kb on + strand, within HMPREF1058_RS12755 at 39.530 kb on - strand, within HMPREF1058_RS12755 at 39.552 kb on - strand, within HMPREF1058_RS12755 at 39.600 kb on - strand, within HMPREF1058_RS12755 at 39.636 kb on - strand, within HMPREF1058_RS12755 at 39.770 kb on + strand, within HMPREF1058_RS12755 at 39.783 kb on + strand, within HMPREF1058_RS12755 at 39.829 kb on - strand, within HMPREF1058_RS12755 at 39.878 kb on + strand, within HMPREF1058_RS12755 at 39.879 kb on - strand, within HMPREF1058_RS12755 at 39.890 kb on + strand, within HMPREF1058_RS12755 at 39.897 kb on - strand, within HMPREF1058_RS12755 at 39.935 kb on + strand, within HMPREF1058_RS12755 at 39.963 kb on + strand, within HMPREF1058_RS12755 at 40.005 kb on + strand, within HMPREF1058_RS12755 at 40.005 kb on + strand, within HMPREF1058_RS12755 at 40.011 kb on - strand, within HMPREF1058_RS12755 at 40.055 kb on - strand, within HMPREF1058_RS12755 at 40.106 kb on + strand, within HMPREF1058_RS12755 at 40.155 kb on - strand, within HMPREF1058_RS12755 at 40.185 kb on - strand, within HMPREF1058_RS12755 at 40.185 kb on - strand, within HMPREF1058_RS12755 at 40.195 kb on + strand, within HMPREF1058_RS12755 at 40.199 kb on + strand, within HMPREF1058_RS12755 at 40.199 kb on + strand, within HMPREF1058_RS12755 at 40.200 kb on - strand, within HMPREF1058_RS12755 at 40.204 kb on - strand, within HMPREF1058_RS12755 at 40.222 kb on + strand, within HMPREF1058_RS12755 at 40.222 kb on + strand, within HMPREF1058_RS12755 at 40.222 kb on + strand, within HMPREF1058_RS12755 at 40.223 kb on - strand, within HMPREF1058_RS12755 at 40.223 kb on - strand, within HMPREF1058_RS12755 at 40.230 kb on - strand, within HMPREF1058_RS12755 at 40.256 kb on + strand, within HMPREF1058_RS12755 at 40.257 kb on - strand, within HMPREF1058_RS12755 at 40.303 kb on + strand, within HMPREF1058_RS12755 at 40.337 kb on - strand, within HMPREF1058_RS12755 at 40.388 kb on + strand, within HMPREF1058_RS12755 at 40.389 kb on + strand, within HMPREF1058_RS12755 at 40.480 kb on + strand, within HMPREF1058_RS12755 at 40.481 kb on - strand, within HMPREF1058_RS12755 at 40.481 kb on - strand, within HMPREF1058_RS12755 at 40.488 kb on - strand, within HMPREF1058_RS12755 at 40.494 kb on - strand, within HMPREF1058_RS12755 at 40.494 kb on - strand, within HMPREF1058_RS12755 at 40.575 kb on - strand, within HMPREF1058_RS12755 at 40.603 kb on - strand, within HMPREF1058_RS12755 at 40.623 kb on + strand, within HMPREF1058_RS12755 at 40.688 kb on - strand, within HMPREF1058_RS12755 at 40.772 kb on - strand, within HMPREF1058_RS12755 at 40.859 kb on + strand at 40.956 kb on - strand at 41.059 kb on + strand at 41.216 kb on + strand at 41.220 kb on + strand at 41.463 kb on + strand, within HMPREF1058_RS12750 at 41.526 kb on - strand, within HMPREF1058_RS12750 at 41.552 kb on + strand, within HMPREF1058_RS12750 at 41.553 kb on - strand, within HMPREF1058_RS12750 at 41.555 kb on - strand, within HMPREF1058_RS12750 at 41.560 kb on + strand, within HMPREF1058_RS12750 at 41.561 kb on - strand, within HMPREF1058_RS12750 at 41.561 kb on - strand, within HMPREF1058_RS12750 at 41.561 kb on - strand, within HMPREF1058_RS12750 at 41.562 kb on + strand, within HMPREF1058_RS12750 at 41.563 kb on - strand, within HMPREF1058_RS12750 at 41.563 kb on - strand, within HMPREF1058_RS12750 at 41.564 kb on + strand, within HMPREF1058_RS12750 at 41.714 kb on + strand at 41.715 kb on - strand at 41.715 kb on - strand at 41.734 kb on - strand at 41.734 kb on - strand at 41.756 kb on + strand at 41.763 kb on + strand at 41.765 kb on + strand at 41.765 kb on + strand at 41.766 kb on - strand at 41.808 kb on - strand at 41.838 kb on + strand at 41.885 kb on - strand at 42.001 kb on + strand at 42.002 kb on - strand at 42.003 kb on + strand at 42.004 kb on - strand at 42.005 kb on + strand at 42.062 kb on + strand at 42.064 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 5 mg/ml (C) remove 37,293 + HMPREF1058_RS12765 0.71 +0.6 37,293 + HMPREF1058_RS12765 0.71 -0.8 37,293 + HMPREF1058_RS12765 0.71 -1.3 37,303 + HMPREF1058_RS12765 0.73 -2.7 37,320 + HMPREF1058_RS12765 0.75 -0.4 37,327 + HMPREF1058_RS12765 0.75 -0.3 37,327 + HMPREF1058_RS12765 0.75 -1.3 37,328 - HMPREF1058_RS12765 0.75 -0.4 37,398 - HMPREF1058_RS12765 0.83 +1.0 37,398 - HMPREF1058_RS12765 0.83 +0.2 37,441 - HMPREF1058_RS12765 0.88 -0.6 37,458 - -0.2 37,490 + -1.2 37,491 - -0.4 37,498 + -1.1 37,499 - -1.0 37,626 - HMPREF1058_RS12760 0.20 -1.3 37,632 - HMPREF1058_RS12760 0.21 -0.9 37,633 + HMPREF1058_RS12760 0.21 -0.2 37,638 - HMPREF1058_RS12760 0.21 -0.4 37,670 + HMPREF1058_RS12760 0.26 -0.8 37,748 + HMPREF1058_RS12760 0.38 -1.6 37,748 + HMPREF1058_RS12760 0.38 -0.1 37,777 + HMPREF1058_RS12760 0.43 -0.5 37,809 + HMPREF1058_RS12760 0.47 -1.4 37,810 - HMPREF1058_RS12760 0.48 +2.0 37,810 - HMPREF1058_RS12760 0.48 -0.2 37,815 - HMPREF1058_RS12760 0.48 -1.6 37,854 + HMPREF1058_RS12760 0.54 -0.5 37,854 + HMPREF1058_RS12760 0.54 -0.3 37,854 + HMPREF1058_RS12760 0.54 -0.6 37,858 + HMPREF1058_RS12760 0.55 -0.3 37,858 + HMPREF1058_RS12760 0.55 -0.0 37,991 + HMPREF1058_RS12760 0.75 +1.0 38,025 + HMPREF1058_RS12760 0.80 -0.8 38,026 - HMPREF1058_RS12760 0.81 +1.6 38,026 - HMPREF1058_RS12760 0.81 -2.2 38,026 - HMPREF1058_RS12760 0.81 -0.1 38,048 - HMPREF1058_RS12760 0.84 -1.4 38,048 - HMPREF1058_RS12760 0.84 -0.8 38,102 + +0.5 38,110 - +0.8 38,154 + -0.0 38,166 - +0.8 38,266 + -0.1 38,266 + +0.1 38,311 - +0.4 38,354 + -0.1 38,354 + -1.4 38,356 + +0.1 38,356 + -1.2 38,357 - -1.0 38,374 - -1.9 38,385 - -1.1 38,386 + -1.4 38,386 + -0.9 38,386 + -0.2 38,389 - -1.6 38,389 - -1.5 38,389 - -0.6 38,393 + -0.0 38,538 + -0.2 38,644 - HMPREF1058_RS12755 0.12 -2.0 38,700 - HMPREF1058_RS12755 0.14 -0.3 38,703 - HMPREF1058_RS12755 0.14 +0.1 38,703 - HMPREF1058_RS12755 0.14 -0.0 38,704 + HMPREF1058_RS12755 0.14 -1.8 38,705 - HMPREF1058_RS12755 0.14 -0.5 38,738 + HMPREF1058_RS12755 0.16 -1.6 38,945 + HMPREF1058_RS12755 0.23 -0.3 38,993 - HMPREF1058_RS12755 0.25 +0.0 38,993 - HMPREF1058_RS12755 0.25 -1.2 39,008 - HMPREF1058_RS12755 0.25 -1.1 39,011 + HMPREF1058_RS12755 0.25 +0.6 39,033 - HMPREF1058_RS12755 0.26 -2.9 39,034 + HMPREF1058_RS12755 0.26 -0.8 39,035 - HMPREF1058_RS12755 0.26 +0.1 39,060 - HMPREF1058_RS12755 0.27 +1.0 39,080 + HMPREF1058_RS12755 0.28 -0.8 39,081 - HMPREF1058_RS12755 0.28 -0.6 39,083 - HMPREF1058_RS12755 0.28 -1.3 39,112 + HMPREF1058_RS12755 0.29 -0.2 39,112 + HMPREF1058_RS12755 0.29 -0.9 39,112 + HMPREF1058_RS12755 0.29 -0.3 39,113 - HMPREF1058_RS12755 0.29 -1.5 39,170 - HMPREF1058_RS12755 0.31 -0.5 39,341 + HMPREF1058_RS12755 0.37 -0.7 39,347 - HMPREF1058_RS12755 0.37 -1.2 39,447 - HMPREF1058_RS12755 0.41 -0.3 39,460 - HMPREF1058_RS12755 0.41 -1.0 39,515 + HMPREF1058_RS12755 0.43 -0.4 39,529 + HMPREF1058_RS12755 0.43 -0.5 39,530 - HMPREF1058_RS12755 0.43 -1.3 39,552 - HMPREF1058_RS12755 0.44 -0.1 39,600 - HMPREF1058_RS12755 0.46 -0.2 39,636 - HMPREF1058_RS12755 0.47 -0.0 39,770 + HMPREF1058_RS12755 0.52 -1.4 39,783 + HMPREF1058_RS12755 0.52 -0.7 39,829 - HMPREF1058_RS12755 0.54 -0.5 39,878 + HMPREF1058_RS12755 0.56 -2.2 39,879 - HMPREF1058_RS12755 0.56 -0.3 39,890 + HMPREF1058_RS12755 0.56 -0.1 39,897 - HMPREF1058_RS12755 0.56 -1.4 39,935 + HMPREF1058_RS12755 0.58 -1.2 39,963 + HMPREF1058_RS12755 0.59 -1.0 40,005 + HMPREF1058_RS12755 0.60 +1.5 40,005 + HMPREF1058_RS12755 0.60 -0.1 40,011 - HMPREF1058_RS12755 0.60 -0.1 40,055 - HMPREF1058_RS12755 0.62 +1.4 40,106 + HMPREF1058_RS12755 0.64 -1.3 40,155 - HMPREF1058_RS12755 0.65 -0.7 40,185 - HMPREF1058_RS12755 0.66 +2.4 40,185 - HMPREF1058_RS12755 0.66 -0.7 40,195 + HMPREF1058_RS12755 0.67 -2.6 40,199 + HMPREF1058_RS12755 0.67 -0.8 40,199 + HMPREF1058_RS12755 0.67 -1.1 40,200 - HMPREF1058_RS12755 0.67 -0.1 40,204 - HMPREF1058_RS12755 0.67 -1.0 40,222 + HMPREF1058_RS12755 0.68 -1.4 40,222 + HMPREF1058_RS12755 0.68 +0.5 40,222 + HMPREF1058_RS12755 0.68 -1.1 40,223 - HMPREF1058_RS12755 0.68 +0.1 40,223 - HMPREF1058_RS12755 0.68 -0.3 40,230 - HMPREF1058_RS12755 0.68 +0.2 40,256 + HMPREF1058_RS12755 0.69 -1.1 40,257 - HMPREF1058_RS12755 0.69 -0.6 40,303 + HMPREF1058_RS12755 0.71 -0.5 40,337 - HMPREF1058_RS12755 0.72 +1.1 40,388 + HMPREF1058_RS12755 0.74 -0.3 40,389 + HMPREF1058_RS12755 0.74 +2.6 40,480 + HMPREF1058_RS12755 0.77 +1.6 40,481 - HMPREF1058_RS12755 0.77 -0.5 40,481 - HMPREF1058_RS12755 0.77 -0.0 40,488 - HMPREF1058_RS12755 0.77 -0.3 40,494 - HMPREF1058_RS12755 0.77 -2.2 40,494 - HMPREF1058_RS12755 0.77 -0.7 40,575 - HMPREF1058_RS12755 0.80 +1.0 40,603 - HMPREF1058_RS12755 0.81 -2.2 40,623 + HMPREF1058_RS12755 0.82 -0.1 40,688 - HMPREF1058_RS12755 0.84 +0.1 40,772 - HMPREF1058_RS12755 0.87 +1.0 40,859 + +0.3 40,956 - +0.0 41,059 + -1.3 41,216 + +0.2 41,220 + -1.0 41,463 + HMPREF1058_RS12750 0.50 -1.0 41,526 - HMPREF1058_RS12750 0.63 -2.2 41,552 + HMPREF1058_RS12750 0.68 +0.7 41,553 - HMPREF1058_RS12750 0.68 -0.6 41,555 - HMPREF1058_RS12750 0.69 -2.6 41,560 + HMPREF1058_RS12750 0.70 +0.9 41,561 - HMPREF1058_RS12750 0.70 -2.6 41,561 - HMPREF1058_RS12750 0.70 -1.4 41,561 - HMPREF1058_RS12750 0.70 -1.4 41,562 + HMPREF1058_RS12750 0.70 -1.1 41,563 - HMPREF1058_RS12750 0.70 -2.6 41,563 - HMPREF1058_RS12750 0.70 +0.6 41,564 + HMPREF1058_RS12750 0.71 +0.2 41,714 + +0.2 41,715 - -0.9 41,715 - -2.7 41,734 - -1.0 41,734 - +2.0 41,756 + +0.0 41,763 + -0.0 41,765 + -1.4 41,765 + -1.7 41,766 - -0.8 41,808 - +0.1 41,838 + +0.3 41,885 - +0.5 42,001 + +1.0 42,002 - -2.3 42,003 + +0.1 42,004 - -0.6 42,005 + -0.3 42,062 + +0.0 42,064 + +0.7
Or see this region's nucleotide sequence