Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04265

Experiment: D-Glucose 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose 5 mg/ml (C)
78,162	-		HMPREF1058_RS04275	0.29	-1.5
78,195	+		HMPREF1058_RS04275	0.43	-1.1
78,237	-		HMPREF1058_RS04275	0.60	+0.3
78,246	+		HMPREF1058_RS04275	0.63	-1.2
78,256	-		HMPREF1058_RS04275	0.67	-1.2
78,265	+		HMPREF1058_RS04275	0.71	+0.2
78,276	+		HMPREF1058_RS04275	0.76	-2.1
78,277	-		HMPREF1058_RS04275	0.76	-2.2
78,307	+		HMPREF1058_RS04275	0.88	+1.5
78,307	+		HMPREF1058_RS04275	0.88	-0.6
78,308	-		HMPREF1058_RS04275	0.89	-1.1
78,308	-		HMPREF1058_RS04275	0.89	+1.1
78,308	-		HMPREF1058_RS04275	0.89	-0.5
78,380	-				+1.8
78,392	-				-1.2
78,400	-				+1.0
78,573	-				+0.1
78,575	-				-1.3
78,583	+				-0.8
78,615	+				-1.0
78,626	+				+1.2
78,712	+		HMPREF1058_RS04270	0.16	-0.5
78,870	+		HMPREF1058_RS04270	0.45	-1.0
78,871	-		HMPREF1058_RS04270	0.46	-1.0
79,211	-				+0.2
79,230	+		HMPREF1058_RS04265	0.10	-1.6
79,271	-		HMPREF1058_RS04265	0.15	+0.7
79,275	+		HMPREF1058_RS04265	0.16	-1.6
79,280	+		HMPREF1058_RS04265	0.16	+1.4
79,281	-		HMPREF1058_RS04265	0.16	-1.5
79,350	+		HMPREF1058_RS04265	0.25	-0.2
79,383	-		HMPREF1058_RS04265	0.29	-1.2
79,402	+		HMPREF1058_RS04265	0.31	-3.1
79,402	+		HMPREF1058_RS04265	0.31	-0.5
79,447	+		HMPREF1058_RS04265	0.37	-1.0
79,448	-		HMPREF1058_RS04265	0.37	-1.5
79,448	-		HMPREF1058_RS04265	0.37	-1.4
79,489	-		HMPREF1058_RS04265	0.42	-0.3
79,508	+		HMPREF1058_RS04265	0.44	-0.4
79,519	-		HMPREF1058_RS04265	0.46	+0.6
79,582	-		HMPREF1058_RS04265	0.54	-0.5
79,582	-		HMPREF1058_RS04265	0.54	+2.2
79,585	+		HMPREF1058_RS04265	0.54	-1.2
79,585	+		HMPREF1058_RS04265	0.54	-1.8
79,586	-		HMPREF1058_RS04265	0.54	-3.0
79,586	-		HMPREF1058_RS04265	0.54	+0.5
79,586	-		HMPREF1058_RS04265	0.54	-1.0
79,586	-		HMPREF1058_RS04265	0.54	-1.6
79,586	-		HMPREF1058_RS04265	0.54	-0.1
79,586	-		HMPREF1058_RS04265	0.54	-2.0
79,664	+		HMPREF1058_RS04265	0.64	-2.6
79,664	+		HMPREF1058_RS04265	0.64	+0.6
79,664	+		HMPREF1058_RS04265	0.64	-0.7
79,681	-		HMPREF1058_RS04265	0.66	-1.5
79,681	-		HMPREF1058_RS04265	0.66	-0.5
79,732	-		HMPREF1058_RS04265	0.72	-1.8
79,758	+		HMPREF1058_RS04265	0.75	+1.2
79,759	-		HMPREF1058_RS04265	0.76	-0.4
79,759	-		HMPREF1058_RS04265	0.76	-1.2
79,760	+		HMPREF1058_RS04265	0.76	-3.1
79,763	-		HMPREF1058_RS04265	0.76	-0.8
79,874	+		HMPREF1058_RS04265	0.90	-1.2
79,955	+				+0.1
79,955	+				-2.1
79,955	+				-2.8
79,956	-				-0.2
79,956	-				-0.5
79,957	+				-1.2
79,960	+				-0.2
80,095	+				+0.4
80,113	+				-0.4
80,240	+		HMPREF1058_RS04260	0.15	-0.8
80,241	-		HMPREF1058_RS04260	0.15	-0.2
80,241	-		HMPREF1058_RS04260	0.15	-2.3
80,264	-		HMPREF1058_RS04260	0.17	+2.8
80,389	-		HMPREF1058_RS04260	0.27	-0.2
80,529	+		HMPREF1058_RS04260	0.39	+0.3
80,686	+		HMPREF1058_RS04260	0.51	-0.8
80,689	+		HMPREF1058_RS04260	0.52	+0.6
80,689	+		HMPREF1058_RS04260	0.52	-0.6
80,701	-		HMPREF1058_RS04260	0.53	-0.2
80,702	+		HMPREF1058_RS04260	0.53	-1.9
80,736	+		HMPREF1058_RS04260	0.55	+0.7
80,736	+		HMPREF1058_RS04260	0.55	+0.3
80,737	-		HMPREF1058_RS04260	0.56	+0.4
80,849	+		HMPREF1058_RS04260	0.65	-0.1
80,850	-		HMPREF1058_RS04260	0.65	+0.0
80,850	-		HMPREF1058_RS04260	0.65	+0.7
80,909	+		HMPREF1058_RS04260	0.69	-0.8