Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17060

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17065 and HMPREF1058_RS17060 are separated by 6 nucleotidesHMPREF1058_RS17060 and HMPREF1058_RS17055 are separated by 4 nucleotides HMPREF1058_RS17065: HMPREF1058_RS17065 - sugar MFS transporter, at 527,042 to 528,241 _RS17065 HMPREF1058_RS17060: HMPREF1058_RS17060 - HAD family hydrolase, at 528,248 to 528,970 _RS17060 HMPREF1058_RS17055: HMPREF1058_RS17055 - flippase-like domain-containing protein, at 528,975 to 529,976 _RS17055 Position (kb) 528 529Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 527.281 kb on - strand, within HMPREF1058_RS17065at 527.281 kb on - strand, within HMPREF1058_RS17065at 527.316 kb on - strand, within HMPREF1058_RS17065at 527.366 kb on + strand, within HMPREF1058_RS17065at 527.502 kb on + strand, within HMPREF1058_RS17065at 527.502 kb on + strand, within HMPREF1058_RS17065at 527.503 kb on - strand, within HMPREF1058_RS17065at 527.509 kb on + strand, within HMPREF1058_RS17065at 527.518 kb on + strand, within HMPREF1058_RS17065at 527.525 kb on - strand, within HMPREF1058_RS17065at 527.545 kb on - strand, within HMPREF1058_RS17065at 527.571 kb on - strand, within HMPREF1058_RS17065at 527.576 kb on + strand, within HMPREF1058_RS17065at 527.684 kb on + strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.707 kb on - strand, within HMPREF1058_RS17065at 527.707 kb on - strand, within HMPREF1058_RS17065at 527.720 kb on - strand, within HMPREF1058_RS17065at 527.783 kb on + strand, within HMPREF1058_RS17065at 527.851 kb on + strand, within HMPREF1058_RS17065at 527.851 kb on + strand, within HMPREF1058_RS17065at 527.852 kb on - strand, within HMPREF1058_RS17065at 528.013 kb on - strand, within HMPREF1058_RS17065at 528.013 kb on - strand, within HMPREF1058_RS17065at 528.047 kb on + strand, within HMPREF1058_RS17065at 528.048 kb on - strand, within HMPREF1058_RS17065at 528.055 kb on - strand, within HMPREF1058_RS17065at 528.104 kb on - strand, within HMPREF1058_RS17065at 528.135 kb on - strandat 528.145 kb on + strandat 528.185 kb on + strandat 528.200 kb on + strandat 528.201 kb on - strandat 528.287 kb on + strandat 528.359 kb on + strand, within HMPREF1058_RS17060at 528.360 kb on - strand, within HMPREF1058_RS17060at 528.454 kb on - strand, within HMPREF1058_RS17060at 528.454 kb on - strand, within HMPREF1058_RS17060at 528.454 kb on - strand, within HMPREF1058_RS17060at 528.548 kb on + strand, within HMPREF1058_RS17060at 528.549 kb on - strand, within HMPREF1058_RS17060at 528.583 kb on + strand, within HMPREF1058_RS17060at 528.585 kb on + strand, within HMPREF1058_RS17060at 528.630 kb on - strand, within HMPREF1058_RS17060at 528.630 kb on - strand, within HMPREF1058_RS17060at 528.630 kb on - strand, within HMPREF1058_RS17060at 528.630 kb on - strand, within HMPREF1058_RS17060at 528.632 kb on - strand, within HMPREF1058_RS17060at 528.642 kb on + strand, within HMPREF1058_RS17060at 528.773 kb on - strand, within HMPREF1058_RS17060at 528.799 kb on + strand, within HMPREF1058_RS17060at 528.825 kb on + strand, within HMPREF1058_RS17060at 528.826 kb on - strand, within HMPREF1058_RS17060at 528.873 kb on + strand, within HMPREF1058_RS17060at 528.874 kb on - strand, within HMPREF1058_RS17060at 528.877 kb on + strand, within HMPREF1058_RS17060at 528.877 kb on + strand, within HMPREF1058_RS17060at 528.878 kb on - strand, within HMPREF1058_RS17060at 528.917 kb on + strandat 528.918 kb on - strandat 528.931 kb on - strandat 528.939 kb on - strandat 528.964 kb on + strandat 528.977 kb on - strandat 528.981 kb on - strandat 528.992 kb on + strandat 529.027 kb on - strandat 529.194 kb on + strand, within HMPREF1058_RS17055at 529.263 kb on + strand, within HMPREF1058_RS17055at 529.263 kb on + strand, within HMPREF1058_RS17055at 529.313 kb on + strand, within HMPREF1058_RS17055at 529.314 kb on - strandat 529.322 kb on + strand, within HMPREF1058_RS17055at 529.483 kb on - strand, within HMPREF1058_RS17055at 529.514 kb on + strand, within HMPREF1058_RS17055at 529.514 kb on + strand, within HMPREF1058_RS17055at 529.515 kb on - strand, within HMPREF1058_RS17055at 529.515 kb on - strand, within HMPREF1058_RS17055at 529.515 kb on - strand, within HMPREF1058_RS17055at 529.530 kb on - strand, within HMPREF1058_RS17055at 529.552 kb on + strand, within HMPREF1058_RS17055at 529.610 kb on - strand, within HMPREF1058_RS17055at 529.648 kb on + strand, within HMPREF1058_RS17055at 529.761 kb on - strand, within HMPREF1058_RS17055at 529.790 kb on + strand, within HMPREF1058_RS17055at 529.793 kb on + strand, within HMPREF1058_RS17055at 529.794 kb on - strand, within HMPREF1058_RS17055at 529.796 kb on - strand, within HMPREF1058_RS17055at 529.823 kb on + strandat 529.824 kb on - strand, within HMPREF1058_RS17055at 529.824 kb on - strand, within HMPREF1058_RS17055at 529.877 kb on + strandat 529.924 kb on - strandat 529.955 kb on + strandat 529.956 kb on - strandat 529.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
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527,281 - HMPREF1058_RS17065 0.20 -0.3
527,281 - HMPREF1058_RS17065 0.20 +0.7
527,316 - HMPREF1058_RS17065 0.23 +0.6
527,366 + HMPREF1058_RS17065 0.27 +0.8
527,502 + HMPREF1058_RS17065 0.38 +0.5
527,502 + HMPREF1058_RS17065 0.38 -0.6
527,503 - HMPREF1058_RS17065 0.38 +1.8
527,509 + HMPREF1058_RS17065 0.39 +1.2
527,518 + HMPREF1058_RS17065 0.40 -0.0
527,525 - HMPREF1058_RS17065 0.40 -0.6
527,545 - HMPREF1058_RS17065 0.42 +1.8
527,571 - HMPREF1058_RS17065 0.44 +0.8
527,576 + HMPREF1058_RS17065 0.45 -1.4
527,684 + HMPREF1058_RS17065 0.54 -0.9
527,705 - HMPREF1058_RS17065 0.55 +2.0
527,705 - HMPREF1058_RS17065 0.55 +0.3
527,705 - HMPREF1058_RS17065 0.55 +0.0
527,705 - HMPREF1058_RS17065 0.55 +1.6
527,706 + HMPREF1058_RS17065 0.55 +1.2
527,706 + HMPREF1058_RS17065 0.55 +0.5
527,706 + HMPREF1058_RS17065 0.55 +0.3
527,706 + HMPREF1058_RS17065 0.55 +0.6
527,707 - HMPREF1058_RS17065 0.55 +0.7
527,707 - HMPREF1058_RS17065 0.55 +0.8
527,720 - HMPREF1058_RS17065 0.56 +1.7
527,783 + HMPREF1058_RS17065 0.62 -0.3
527,851 + HMPREF1058_RS17065 0.67 -1.4
527,851 + HMPREF1058_RS17065 0.67 +2.0
527,852 - HMPREF1058_RS17065 0.68 +0.8
528,013 - HMPREF1058_RS17065 0.81 +1.2
528,013 - HMPREF1058_RS17065 0.81 +0.8
528,047 + HMPREF1058_RS17065 0.84 -0.4
528,048 - HMPREF1058_RS17065 0.84 +1.2
528,055 - HMPREF1058_RS17065 0.84 +0.9
528,104 - HMPREF1058_RS17065 0.89 +2.1
528,135 - +0.5
528,145 + -0.7
528,185 + +0.3
528,200 + +0.5
528,201 - -0.1
528,287 + -2.9
528,359 + HMPREF1058_RS17060 0.15 -1.8
528,360 - HMPREF1058_RS17060 0.15 -3.1
528,454 - HMPREF1058_RS17060 0.28 -0.4
528,454 - HMPREF1058_RS17060 0.28 -1.8
528,454 - HMPREF1058_RS17060 0.28 -3.3
528,548 + HMPREF1058_RS17060 0.41 -1.9
528,549 - HMPREF1058_RS17060 0.42 -1.8
528,583 + HMPREF1058_RS17060 0.46 -1.2
528,585 + HMPREF1058_RS17060 0.47 -2.4
528,630 - HMPREF1058_RS17060 0.53 -1.6
528,630 - HMPREF1058_RS17060 0.53 -0.9
528,630 - HMPREF1058_RS17060 0.53 -1.5
528,630 - HMPREF1058_RS17060 0.53 -2.2
528,632 - HMPREF1058_RS17060 0.53 +0.4
528,642 + HMPREF1058_RS17060 0.54 -2.1
528,773 - HMPREF1058_RS17060 0.73 -2.7
528,799 + HMPREF1058_RS17060 0.76 -2.1
528,825 + HMPREF1058_RS17060 0.80 -3.7
528,826 - HMPREF1058_RS17060 0.80 -1.8
528,873 + HMPREF1058_RS17060 0.86 -1.6
528,874 - HMPREF1058_RS17060 0.87 -2.8
528,877 + HMPREF1058_RS17060 0.87 -2.2
528,877 + HMPREF1058_RS17060 0.87 +1.1
528,878 - HMPREF1058_RS17060 0.87 -2.6
528,917 + -2.8
528,918 - -0.4
528,931 - -2.2
528,939 - -0.9
528,964 + -1.4
528,977 - +1.7
528,981 - +1.0
528,992 + -1.3
529,027 - +1.7
529,194 + HMPREF1058_RS17055 0.22 -1.8
529,263 + HMPREF1058_RS17055 0.29 -2.8
529,263 + HMPREF1058_RS17055 0.29 -2.0
529,313 + HMPREF1058_RS17055 0.34 -2.4
529,314 - -0.6
529,322 + HMPREF1058_RS17055 0.35 +0.8
529,483 - HMPREF1058_RS17055 0.51 +0.1
529,514 + HMPREF1058_RS17055 0.54 -3.6
529,514 + HMPREF1058_RS17055 0.54 -2.8
529,515 - HMPREF1058_RS17055 0.54 -1.4
529,515 - HMPREF1058_RS17055 0.54 -0.6
529,515 - HMPREF1058_RS17055 0.54 -0.8
529,530 - HMPREF1058_RS17055 0.55 -0.6
529,552 + HMPREF1058_RS17055 0.58 -0.9
529,610 - HMPREF1058_RS17055 0.63 +0.4
529,648 + HMPREF1058_RS17055 0.67 -1.9
529,761 - HMPREF1058_RS17055 0.78 -0.5
529,790 + HMPREF1058_RS17055 0.81 -0.9
529,793 + HMPREF1058_RS17055 0.82 -4.1
529,794 - HMPREF1058_RS17055 0.82 -0.2
529,796 - HMPREF1058_RS17055 0.82 +0.7
529,823 + +0.4
529,824 - HMPREF1058_RS17055 0.85 +1.8
529,824 - HMPREF1058_RS17055 0.85 -0.8
529,877 + -2.3
529,924 - -1.2
529,955 + -0.2
529,956 - +2.0
529,964 - +0.3

Or see this region's nucleotide sequence