Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07960 and HMPREF1058_RS07955 are separated by 77 nucleotides HMPREF1058_RS07955 and HMPREF1058_RS07950 are separated by 150 nucleotides HMPREF1058_RS07950 and HMPREF1058_RS07945 are separated by 71 nucleotides
HMPREF1058_RS07960: HMPREF1058_RS07960 - response regulator, at 89,214 to 93,230
_RS07960
HMPREF1058_RS07955: HMPREF1058_RS07955 - phosphoribosylformylglycinamidine synthase, at 93,308 to 97,012
_RS07955
HMPREF1058_RS07950: HMPREF1058_RS07950 - LysE family translocator, at 97,163 to 97,822
_RS07950
HMPREF1058_RS07945: HMPREF1058_RS07945 - DUF4924 family protein, at 97,894 to 98,436
_RS07945
Position (kb) 93
94
95
96
97
98 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 92.343 kb on - strand, within HMPREF1058_RS07960 at 92.367 kb on + strand, within HMPREF1058_RS07960 at 92.371 kb on - strand, within HMPREF1058_RS07960 at 92.439 kb on + strand, within HMPREF1058_RS07960 at 92.440 kb on - strand, within HMPREF1058_RS07960 at 92.473 kb on - strand, within HMPREF1058_RS07960 at 92.477 kb on - strand, within HMPREF1058_RS07960 at 92.481 kb on - strand, within HMPREF1058_RS07960 at 92.499 kb on + strand, within HMPREF1058_RS07960 at 92.499 kb on + strand, within HMPREF1058_RS07960 at 92.505 kb on + strand, within HMPREF1058_RS07960 at 92.536 kb on + strand, within HMPREF1058_RS07960 at 92.537 kb on - strand, within HMPREF1058_RS07960 at 92.545 kb on - strand, within HMPREF1058_RS07960 at 92.583 kb on + strand, within HMPREF1058_RS07960 at 92.638 kb on + strand, within HMPREF1058_RS07960 at 92.665 kb on + strand, within HMPREF1058_RS07960 at 92.666 kb on - strand, within HMPREF1058_RS07960 at 92.702 kb on + strand, within HMPREF1058_RS07960 at 92.702 kb on + strand, within HMPREF1058_RS07960 at 92.714 kb on + strand, within HMPREF1058_RS07960 at 92.714 kb on + strand, within HMPREF1058_RS07960 at 92.715 kb on - strand, within HMPREF1058_RS07960 at 92.719 kb on - strand, within HMPREF1058_RS07960 at 92.732 kb on - strand, within HMPREF1058_RS07960 at 92.758 kb on - strand, within HMPREF1058_RS07960 at 92.759 kb on + strand, within HMPREF1058_RS07960 at 92.759 kb on + strand, within HMPREF1058_RS07960 at 92.759 kb on + strand, within HMPREF1058_RS07960 at 92.759 kb on + strand, within HMPREF1058_RS07960 at 92.759 kb on + strand, within HMPREF1058_RS07960 at 92.760 kb on - strand, within HMPREF1058_RS07960 at 92.760 kb on - strand, within HMPREF1058_RS07960 at 92.760 kb on - strand, within HMPREF1058_RS07960 at 92.760 kb on - strand, within HMPREF1058_RS07960 at 92.760 kb on - strand, within HMPREF1058_RS07960 at 92.853 kb on - strand at 92.869 kb on + strand at 92.869 kb on + strand at 92.869 kb on + strand at 92.877 kb on + strand at 92.919 kb on - strand at 92.919 kb on - strand at 92.981 kb on + strand at 92.982 kb on - strand at 92.992 kb on + strand at 93.007 kb on + strand at 93.007 kb on + strand at 93.016 kb on - strand at 93.041 kb on + strand at 93.042 kb on - strand at 93.042 kb on - strand at 93.042 kb on - strand at 93.063 kb on + strand at 93.117 kb on + strand at 93.159 kb on + strand at 93.161 kb on + strand at 93.165 kb on + strand at 93.166 kb on - strand at 93.182 kb on + strand at 93.243 kb on + strand at 93.246 kb on - strand at 93.529 kb on - strand at 93.534 kb on + strand at 93.553 kb on - strand at 93.553 kb on - strand at 93.553 kb on - strand at 93.650 kb on - strand at 93.755 kb on + strand, within HMPREF1058_RS07955 at 93.779 kb on + strand, within HMPREF1058_RS07955 at 93.797 kb on - strand, within HMPREF1058_RS07955 at 93.797 kb on - strand, within HMPREF1058_RS07955 at 93.797 kb on - strand, within HMPREF1058_RS07955 at 93.797 kb on - strand, within HMPREF1058_RS07955 at 93.810 kb on + strand, within HMPREF1058_RS07955 at 93.818 kb on - strand, within HMPREF1058_RS07955 at 93.896 kb on - strand, within HMPREF1058_RS07955 at 93.971 kb on + strand, within HMPREF1058_RS07955 at 93.972 kb on - strand, within HMPREF1058_RS07955 at 94.000 kb on - strand, within HMPREF1058_RS07955 at 94.008 kb on + strand, within HMPREF1058_RS07955 at 94.232 kb on + strand, within HMPREF1058_RS07955 at 94.233 kb on - strand, within HMPREF1058_RS07955 at 94.233 kb on - strand, within HMPREF1058_RS07955 at 94.233 kb on - strand at 94.245 kb on + strand, within HMPREF1058_RS07955 at 94.263 kb on + strand, within HMPREF1058_RS07955 at 94.313 kb on - strand, within HMPREF1058_RS07955 at 94.323 kb on - strand, within HMPREF1058_RS07955 at 94.332 kb on - strand, within HMPREF1058_RS07955 at 94.442 kb on - strand, within HMPREF1058_RS07955 at 94.507 kb on + strand, within HMPREF1058_RS07955 at 94.556 kb on - strand, within HMPREF1058_RS07955 at 94.562 kb on + strand, within HMPREF1058_RS07955 at 94.597 kb on - strand, within HMPREF1058_RS07955 at 94.610 kb on + strand, within HMPREF1058_RS07955 at 94.611 kb on - strand, within HMPREF1058_RS07955 at 94.632 kb on - strand, within HMPREF1058_RS07955 at 94.673 kb on + strand, within HMPREF1058_RS07955 at 94.696 kb on + strand, within HMPREF1058_RS07955 at 94.701 kb on + strand, within HMPREF1058_RS07955 at 94.701 kb on + strand, within HMPREF1058_RS07955 at 95.006 kb on + strand, within HMPREF1058_RS07955 at 95.006 kb on + strand, within HMPREF1058_RS07955 at 95.099 kb on + strand, within HMPREF1058_RS07955 at 95.101 kb on + strand, within HMPREF1058_RS07955 at 95.102 kb on - strand, within HMPREF1058_RS07955 at 95.129 kb on + strand, within HMPREF1058_RS07955 at 95.130 kb on - strand, within HMPREF1058_RS07955 at 95.210 kb on + strand, within HMPREF1058_RS07955 at 95.215 kb on + strand, within HMPREF1058_RS07955 at 95.259 kb on - strand, within HMPREF1058_RS07955 at 95.269 kb on + strand, within HMPREF1058_RS07955 at 95.451 kb on + strand, within HMPREF1058_RS07955 at 95.451 kb on + strand, within HMPREF1058_RS07955 at 95.451 kb on + strand, within HMPREF1058_RS07955 at 95.452 kb on - strand, within HMPREF1058_RS07955 at 95.452 kb on - strand, within HMPREF1058_RS07955 at 95.549 kb on - strand, within HMPREF1058_RS07955 at 95.597 kb on - strand, within HMPREF1058_RS07955 at 95.604 kb on - strand, within HMPREF1058_RS07955 at 95.622 kb on - strand, within HMPREF1058_RS07955 at 95.689 kb on + strand, within HMPREF1058_RS07955 at 95.690 kb on - strand, within HMPREF1058_RS07955 at 95.720 kb on - strand, within HMPREF1058_RS07955 at 95.720 kb on - strand, within HMPREF1058_RS07955 at 95.721 kb on + strand, within HMPREF1058_RS07955 at 95.721 kb on + strand, within HMPREF1058_RS07955 at 95.721 kb on + strand, within HMPREF1058_RS07955 at 95.722 kb on - strand, within HMPREF1058_RS07955 at 95.722 kb on - strand, within HMPREF1058_RS07955 at 95.852 kb on + strand, within HMPREF1058_RS07955 at 95.863 kb on + strand, within HMPREF1058_RS07955 at 95.864 kb on - strand, within HMPREF1058_RS07955 at 95.864 kb on - strand, within HMPREF1058_RS07955 at 95.864 kb on - strand, within HMPREF1058_RS07955 at 95.932 kb on + strand, within HMPREF1058_RS07955 at 95.933 kb on - strand, within HMPREF1058_RS07955 at 95.952 kb on + strand, within HMPREF1058_RS07955 at 95.953 kb on - strand, within HMPREF1058_RS07955 at 95.953 kb on - strand, within HMPREF1058_RS07955 at 95.953 kb on - strand, within HMPREF1058_RS07955 at 96.148 kb on + strand, within HMPREF1058_RS07955 at 96.149 kb on - strand, within HMPREF1058_RS07955 at 96.149 kb on - strand, within HMPREF1058_RS07955 at 96.149 kb on - strand, within HMPREF1058_RS07955 at 96.151 kb on - strand, within HMPREF1058_RS07955 at 96.248 kb on + strand, within HMPREF1058_RS07955 at 96.248 kb on + strand, within HMPREF1058_RS07955 at 96.248 kb on + strand, within HMPREF1058_RS07955 at 96.249 kb on - strand, within HMPREF1058_RS07955 at 96.290 kb on - strand, within HMPREF1058_RS07955 at 96.382 kb on - strand, within HMPREF1058_RS07955 at 96.391 kb on + strand, within HMPREF1058_RS07955 at 96.393 kb on + strand, within HMPREF1058_RS07955 at 96.562 kb on + strand, within HMPREF1058_RS07955 at 96.562 kb on + strand, within HMPREF1058_RS07955 at 96.563 kb on - strand, within HMPREF1058_RS07955 at 96.595 kb on - strand, within HMPREF1058_RS07955 at 96.717 kb on + strand at 96.717 kb on + strand at 96.717 kb on + strand at 96.718 kb on - strand at 96.718 kb on - strand at 96.718 kb on - strand at 96.721 kb on + strand at 96.771 kb on + strand at 96.771 kb on + strand at 96.785 kb on + strand at 96.786 kb on - strand at 96.797 kb on - strand at 96.797 kb on - strand at 96.797 kb on - strand at 96.900 kb on - strand at 96.977 kb on + strand at 96.977 kb on + strand at 96.978 kb on - strand at 97.021 kb on + strand at 97.022 kb on - strand at 97.067 kb on - strand at 97.069 kb on + strand at 97.090 kb on + strand at 97.090 kb on - strand at 97.090 kb on - strand at 97.122 kb on + strand at 97.122 kb on + strand at 97.126 kb on + strand at 97.132 kb on + strand at 97.833 kb on + strand at 97.833 kb on + strand at 97.943 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.947 kb on + strand at 97.947 kb on + strand at 97.947 kb on + strand at 97.989 kb on + strand, within HMPREF1058_RS07945
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 92,343 - HMPREF1058_RS07960 0.78 +0.5 92,367 + HMPREF1058_RS07960 0.78 +0.8 92,371 - HMPREF1058_RS07960 0.79 +1.1 92,439 + HMPREF1058_RS07960 0.80 +1.5 92,440 - HMPREF1058_RS07960 0.80 +0.3 92,473 - HMPREF1058_RS07960 0.81 +1.3 92,477 - HMPREF1058_RS07960 0.81 +1.0 92,481 - HMPREF1058_RS07960 0.81 -0.2 92,499 + HMPREF1058_RS07960 0.82 -1.4 92,499 + HMPREF1058_RS07960 0.82 -0.3 92,505 + HMPREF1058_RS07960 0.82 +0.2 92,536 + HMPREF1058_RS07960 0.83 +0.1 92,537 - HMPREF1058_RS07960 0.83 +0.5 92,545 - HMPREF1058_RS07960 0.83 +1.9 92,583 + HMPREF1058_RS07960 0.84 +0.4 92,638 + HMPREF1058_RS07960 0.85 -0.4 92,665 + HMPREF1058_RS07960 0.86 +0.6 92,666 - HMPREF1058_RS07960 0.86 +1.5 92,702 + HMPREF1058_RS07960 0.87 +0.9 92,702 + HMPREF1058_RS07960 0.87 +1.0 92,714 + HMPREF1058_RS07960 0.87 -0.3 92,714 + HMPREF1058_RS07960 0.87 -1.1 92,715 - HMPREF1058_RS07960 0.87 -0.0 92,719 - HMPREF1058_RS07960 0.87 +1.8 92,732 - HMPREF1058_RS07960 0.88 +0.8 92,758 - HMPREF1058_RS07960 0.88 +1.0 92,759 + HMPREF1058_RS07960 0.88 +1.4 92,759 + HMPREF1058_RS07960 0.88 +0.0 92,759 + HMPREF1058_RS07960 0.88 +0.0 92,759 + HMPREF1058_RS07960 0.88 +0.1 92,759 + HMPREF1058_RS07960 0.88 +0.0 92,760 - HMPREF1058_RS07960 0.88 +0.8 92,760 - HMPREF1058_RS07960 0.88 -0.8 92,760 - HMPREF1058_RS07960 0.88 +1.2 92,760 - HMPREF1058_RS07960 0.88 +0.8 92,760 - HMPREF1058_RS07960 0.88 +0.0 92,853 - +1.5 92,869 + +0.3 92,869 + +0.4 92,869 + +0.3 92,877 + +0.7 92,919 - +0.2 92,919 - +0.9 92,981 + +0.7 92,982 - +1.1 92,992 + +0.5 93,007 + +1.0 93,007 + +0.6 93,016 - +1.2 93,041 + +0.4 93,042 - +2.6 93,042 - +2.2 93,042 - -0.1 93,063 + +0.7 93,117 + +0.8 93,159 + +0.4 93,161 + +1.0 93,165 + +1.1 93,166 - +0.8 93,182 + -0.2 93,243 + +0.7 93,246 - -0.2 93,529 - -4.1 93,534 + -1.8 93,553 - -3.0 93,553 - -3.3 93,553 - -2.3 93,650 - -1.0 93,755 + HMPREF1058_RS07955 0.12 -2.1 93,779 + HMPREF1058_RS07955 0.13 -2.2 93,797 - HMPREF1058_RS07955 0.13 -1.8 93,797 - HMPREF1058_RS07955 0.13 -4.2 93,797 - HMPREF1058_RS07955 0.13 -3.2 93,797 - HMPREF1058_RS07955 0.13 -3.7 93,810 + HMPREF1058_RS07955 0.14 -3.4 93,818 - HMPREF1058_RS07955 0.14 -1.6 93,896 - HMPREF1058_RS07955 0.16 -2.1 93,971 + HMPREF1058_RS07955 0.18 -2.9 93,972 - HMPREF1058_RS07955 0.18 -3.8 94,000 - HMPREF1058_RS07955 0.19 -0.6 94,008 + HMPREF1058_RS07955 0.19 -3.2 94,232 + HMPREF1058_RS07955 0.25 -2.3 94,233 - HMPREF1058_RS07955 0.25 -3.6 94,233 - HMPREF1058_RS07955 0.25 -4.2 94,233 - +1.4 94,245 + HMPREF1058_RS07955 0.25 -0.2 94,263 + HMPREF1058_RS07955 0.26 -2.2 94,313 - HMPREF1058_RS07955 0.27 -2.8 94,323 - HMPREF1058_RS07955 0.27 -1.4 94,332 - HMPREF1058_RS07955 0.28 -1.6 94,442 - HMPREF1058_RS07955 0.31 -4.2 94,507 + HMPREF1058_RS07955 0.32 -2.7 94,556 - HMPREF1058_RS07955 0.34 -2.6 94,562 + HMPREF1058_RS07955 0.34 -3.9 94,597 - HMPREF1058_RS07955 0.35 -3.3 94,610 + HMPREF1058_RS07955 0.35 -2.2 94,611 - HMPREF1058_RS07955 0.35 -2.3 94,632 - HMPREF1058_RS07955 0.36 -1.6 94,673 + HMPREF1058_RS07955 0.37 -1.2 94,696 + HMPREF1058_RS07955 0.37 -3.1 94,701 + HMPREF1058_RS07955 0.38 -3.5 94,701 + HMPREF1058_RS07955 0.38 -2.6 95,006 + HMPREF1058_RS07955 0.46 -2.6 95,006 + HMPREF1058_RS07955 0.46 -2.9 95,099 + HMPREF1058_RS07955 0.48 -2.3 95,101 + HMPREF1058_RS07955 0.48 -2.4 95,102 - HMPREF1058_RS07955 0.48 -2.3 95,129 + HMPREF1058_RS07955 0.49 +0.4 95,130 - HMPREF1058_RS07955 0.49 -3.2 95,210 + HMPREF1058_RS07955 0.51 -2.3 95,215 + HMPREF1058_RS07955 0.51 -0.2 95,259 - HMPREF1058_RS07955 0.53 -2.2 95,269 + HMPREF1058_RS07955 0.53 +0.4 95,451 + HMPREF1058_RS07955 0.58 -3.6 95,451 + HMPREF1058_RS07955 0.58 -3.7 95,451 + HMPREF1058_RS07955 0.58 -4.7 95,452 - HMPREF1058_RS07955 0.58 -2.4 95,452 - HMPREF1058_RS07955 0.58 -1.6 95,549 - HMPREF1058_RS07955 0.60 -3.4 95,597 - HMPREF1058_RS07955 0.62 -2.9 95,604 - HMPREF1058_RS07955 0.62 -4.1 95,622 - HMPREF1058_RS07955 0.62 -2.0 95,689 + HMPREF1058_RS07955 0.64 -1.8 95,690 - HMPREF1058_RS07955 0.64 -3.7 95,720 - HMPREF1058_RS07955 0.65 -4.9 95,720 - HMPREF1058_RS07955 0.65 -4.8 95,721 + HMPREF1058_RS07955 0.65 -2.1 95,721 + HMPREF1058_RS07955 0.65 -2.9 95,721 + HMPREF1058_RS07955 0.65 -1.8 95,722 - HMPREF1058_RS07955 0.65 -0.6 95,722 - HMPREF1058_RS07955 0.65 -1.6 95,852 + HMPREF1058_RS07955 0.69 +0.4 95,863 + HMPREF1058_RS07955 0.69 -3.3 95,864 - HMPREF1058_RS07955 0.69 -4.0 95,864 - HMPREF1058_RS07955 0.69 -4.2 95,864 - HMPREF1058_RS07955 0.69 -3.7 95,932 + HMPREF1058_RS07955 0.71 -3.2 95,933 - HMPREF1058_RS07955 0.71 -3.4 95,952 + HMPREF1058_RS07955 0.71 -1.6 95,953 - HMPREF1058_RS07955 0.71 -1.2 95,953 - HMPREF1058_RS07955 0.71 -2.7 95,953 - HMPREF1058_RS07955 0.71 -2.6 96,148 + HMPREF1058_RS07955 0.77 -1.4 96,149 - HMPREF1058_RS07955 0.77 -1.6 96,149 - HMPREF1058_RS07955 0.77 -1.4 96,149 - HMPREF1058_RS07955 0.77 -2.8 96,151 - HMPREF1058_RS07955 0.77 -2.4 96,248 + HMPREF1058_RS07955 0.79 -2.1 96,248 + HMPREF1058_RS07955 0.79 -1.6 96,248 + HMPREF1058_RS07955 0.79 -2.0 96,249 - HMPREF1058_RS07955 0.79 -2.2 96,290 - HMPREF1058_RS07955 0.80 -2.6 96,382 - HMPREF1058_RS07955 0.83 +0.4 96,391 + HMPREF1058_RS07955 0.83 -1.4 96,393 + HMPREF1058_RS07955 0.83 -1.0 96,562 + HMPREF1058_RS07955 0.88 -2.4 96,562 + HMPREF1058_RS07955 0.88 -2.1 96,563 - HMPREF1058_RS07955 0.88 -2.5 96,595 - HMPREF1058_RS07955 0.89 -3.7 96,717 + -2.0 96,717 + -0.6 96,717 + -3.5 96,718 - -0.2 96,718 - -2.9 96,718 - -2.0 96,721 + -0.6 96,771 + -0.6 96,771 + -1.6 96,785 + -3.8 96,786 - -1.8 96,797 - -0.2 96,797 - -1.0 96,797 - -1.8 96,900 - -2.7 96,977 + -2.1 96,977 + -2.4 96,978 - -0.6 97,021 + -2.3 97,022 - -4.3 97,067 - -2.0 97,069 + -2.9 97,090 + -1.0 97,090 - -1.3 97,090 - -2.5 97,122 + -1.1 97,122 + -0.6 97,126 + +3.0 97,132 + +0.4 97,833 + -0.1 97,833 + -0.2 97,943 + +2.5 97,945 + +0.6 97,945 + +1.2 97,945 + -1.0 97,945 + +0.3 97,945 + +0.2 97,945 + +0.2 97,947 + +0.0 97,947 + -1.1 97,947 + -0.0 97,989 + HMPREF1058_RS07945 0.17 +1.6
Or see this region's nucleotide sequence