Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06825 and HMPREF1058_RS06820 are separated by 126 nucleotides HMPREF1058_RS06820 and HMPREF1058_RS06815 are separated by 120 nucleotides
HMPREF1058_RS06825: HMPREF1058_RS06825 - ACP S-malonyltransferase, at 388,774 to 389,661
_RS06825
HMPREF1058_RS06820: HMPREF1058_RS06820 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 389,788 to 390,612
_RS06820
HMPREF1058_RS06815: HMPREF1058_RS06815 - SDR family oxidoreductase, at 390,733 to 391,671
_RS06815
Position (kb) 389
390
391 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 389.746 kb on - strand at 389.746 kb on - strand at 389.755 kb on + strand at 389.760 kb on - strand at 389.851 kb on + strand at 389.928 kb on - strand, within HMPREF1058_RS06820 at 389.968 kb on - strand, within HMPREF1058_RS06820 at 389.999 kb on - strand, within HMPREF1058_RS06820 at 389.999 kb on - strand, within HMPREF1058_RS06820 at 390.004 kb on - strand, within HMPREF1058_RS06820 at 390.050 kb on - strand, within HMPREF1058_RS06820 at 390.157 kb on + strand, within HMPREF1058_RS06820 at 390.260 kb on - strand, within HMPREF1058_RS06820 at 390.325 kb on - strand, within HMPREF1058_RS06820 at 390.373 kb on - strand, within HMPREF1058_RS06820 at 390.376 kb on + strand, within HMPREF1058_RS06820 at 390.399 kb on + strand, within HMPREF1058_RS06820 at 390.419 kb on - strand, within HMPREF1058_RS06820 at 390.431 kb on - strand, within HMPREF1058_RS06820 at 390.434 kb on + strand, within HMPREF1058_RS06820 at 390.434 kb on + strand, within HMPREF1058_RS06820 at 390.434 kb on + strand, within HMPREF1058_RS06820 at 390.435 kb on - strand, within HMPREF1058_RS06820 at 390.435 kb on - strand, within HMPREF1058_RS06820 at 390.454 kb on + strand, within HMPREF1058_RS06820 at 390.454 kb on + strand, within HMPREF1058_RS06820 at 390.454 kb on + strand, within HMPREF1058_RS06820 at 390.455 kb on - strand, within HMPREF1058_RS06820 at 390.455 kb on - strand, within HMPREF1058_RS06820 at 390.603 kb on - strand at 390.603 kb on - strand at 390.612 kb on + strand at 390.615 kb on - strand at 390.783 kb on - strand at 390.807 kb on + strand at 390.818 kb on + strand at 390.857 kb on + strand, within HMPREF1058_RS06815 at 390.857 kb on + strand, within HMPREF1058_RS06815 at 390.857 kb on + strand, within HMPREF1058_RS06815 at 390.857 kb on + strand, within HMPREF1058_RS06815 at 390.857 kb on + strand, within HMPREF1058_RS06815 at 390.858 kb on - strand, within HMPREF1058_RS06815 at 390.858 kb on - strand, within HMPREF1058_RS06815 at 390.905 kb on + strand, within HMPREF1058_RS06815 at 390.905 kb on + strand, within HMPREF1058_RS06815 at 390.906 kb on - strand, within HMPREF1058_RS06815 at 390.969 kb on - strand, within HMPREF1058_RS06815 at 391.024 kb on - strand, within HMPREF1058_RS06815 at 391.162 kb on + strand, within HMPREF1058_RS06815 at 391.236 kb on - strand, within HMPREF1058_RS06815 at 391.252 kb on - strand, within HMPREF1058_RS06815 at 391.255 kb on + strand, within HMPREF1058_RS06815 at 391.255 kb on + strand, within HMPREF1058_RS06815 at 391.255 kb on + strand, within HMPREF1058_RS06815 at 391.256 kb on - strand, within HMPREF1058_RS06815 at 391.264 kb on - strand, within HMPREF1058_RS06815 at 391.319 kb on + strand, within HMPREF1058_RS06815 at 391.319 kb on + strand, within HMPREF1058_RS06815 at 391.320 kb on - strand, within HMPREF1058_RS06815 at 391.323 kb on + strand, within HMPREF1058_RS06815 at 391.329 kb on + strand, within HMPREF1058_RS06815 at 391.329 kb on + strand, within HMPREF1058_RS06815 at 391.329 kb on + strand, within HMPREF1058_RS06815 at 391.330 kb on - strand, within HMPREF1058_RS06815 at 391.331 kb on + strand, within HMPREF1058_RS06815 at 391.340 kb on - strand, within HMPREF1058_RS06815 at 391.363 kb on - strand, within HMPREF1058_RS06815 at 391.376 kb on + strand, within HMPREF1058_RS06815 at 391.400 kb on + strand, within HMPREF1058_RS06815 at 391.400 kb on + strand, within HMPREF1058_RS06815 at 391.401 kb on - strand, within HMPREF1058_RS06815 at 391.401 kb on - strand, within HMPREF1058_RS06815 at 391.401 kb on - strand, within HMPREF1058_RS06815 at 391.404 kb on + strand, within HMPREF1058_RS06815 at 391.404 kb on + strand, within HMPREF1058_RS06815 at 391.405 kb on - strand, within HMPREF1058_RS06815 at 391.535 kb on + strand, within HMPREF1058_RS06815 at 391.572 kb on + strand, within HMPREF1058_RS06815
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 389,746 - -1.8 389,746 - +0.5 389,755 + +0.2 389,760 - +0.3 389,851 + -3.0 389,928 - HMPREF1058_RS06820 0.17 -2.5 389,968 - HMPREF1058_RS06820 0.22 -2.2 389,999 - HMPREF1058_RS06820 0.26 -0.4 389,999 - HMPREF1058_RS06820 0.26 -1.4 390,004 - HMPREF1058_RS06820 0.26 -2.0 390,050 - HMPREF1058_RS06820 0.32 -2.6 390,157 + HMPREF1058_RS06820 0.45 -3.2 390,260 - HMPREF1058_RS06820 0.57 -2.0 390,325 - HMPREF1058_RS06820 0.65 -2.2 390,373 - HMPREF1058_RS06820 0.71 -1.9 390,376 + HMPREF1058_RS06820 0.71 -3.5 390,399 + HMPREF1058_RS06820 0.74 -1.0 390,419 - HMPREF1058_RS06820 0.76 -2.6 390,431 - HMPREF1058_RS06820 0.78 -1.4 390,434 + HMPREF1058_RS06820 0.78 -0.2 390,434 + HMPREF1058_RS06820 0.78 -3.0 390,434 + HMPREF1058_RS06820 0.78 -0.2 390,435 - HMPREF1058_RS06820 0.78 +0.8 390,435 - HMPREF1058_RS06820 0.78 -2.5 390,454 + HMPREF1058_RS06820 0.81 -2.4 390,454 + HMPREF1058_RS06820 0.81 -0.6 390,454 + HMPREF1058_RS06820 0.81 -4.1 390,455 - HMPREF1058_RS06820 0.81 -2.0 390,455 - HMPREF1058_RS06820 0.81 -3.8 390,603 - -1.9 390,603 - -1.3 390,612 + -0.6 390,615 - -0.4 390,783 - +0.1 390,807 + -0.2 390,818 + +1.1 390,857 + HMPREF1058_RS06815 0.13 +0.2 390,857 + HMPREF1058_RS06815 0.13 +0.4 390,857 + HMPREF1058_RS06815 0.13 +2.7 390,857 + HMPREF1058_RS06815 0.13 -0.0 390,857 + HMPREF1058_RS06815 0.13 +0.8 390,858 - HMPREF1058_RS06815 0.13 +0.4 390,858 - HMPREF1058_RS06815 0.13 -1.3 390,905 + HMPREF1058_RS06815 0.18 -1.1 390,905 + HMPREF1058_RS06815 0.18 -0.3 390,906 - HMPREF1058_RS06815 0.18 -1.6 390,969 - HMPREF1058_RS06815 0.25 +0.3 391,024 - HMPREF1058_RS06815 0.31 -0.8 391,162 + HMPREF1058_RS06815 0.46 +0.7 391,236 - HMPREF1058_RS06815 0.54 -0.2 391,252 - HMPREF1058_RS06815 0.55 -0.2 391,255 + HMPREF1058_RS06815 0.56 +0.1 391,255 + HMPREF1058_RS06815 0.56 +0.1 391,255 + HMPREF1058_RS06815 0.56 +0.8 391,256 - HMPREF1058_RS06815 0.56 +1.4 391,264 - HMPREF1058_RS06815 0.57 +0.3 391,319 + HMPREF1058_RS06815 0.62 +0.6 391,319 + HMPREF1058_RS06815 0.62 -0.1 391,320 - HMPREF1058_RS06815 0.63 +0.4 391,323 + HMPREF1058_RS06815 0.63 +0.1 391,329 + HMPREF1058_RS06815 0.63 -0.2 391,329 + HMPREF1058_RS06815 0.63 -0.1 391,329 + HMPREF1058_RS06815 0.63 +0.2 391,330 - HMPREF1058_RS06815 0.64 +0.4 391,331 + HMPREF1058_RS06815 0.64 +0.3 391,340 - HMPREF1058_RS06815 0.65 -0.7 391,363 - HMPREF1058_RS06815 0.67 +2.3 391,376 + HMPREF1058_RS06815 0.68 +0.2 391,400 + HMPREF1058_RS06815 0.71 +0.1 391,400 + HMPREF1058_RS06815 0.71 +0.4 391,401 - HMPREF1058_RS06815 0.71 -2.0 391,401 - HMPREF1058_RS06815 0.71 -1.8 391,401 - HMPREF1058_RS06815 0.71 -1.4 391,404 + HMPREF1058_RS06815 0.71 -0.4 391,404 + HMPREF1058_RS06815 0.71 -0.3 391,405 - HMPREF1058_RS06815 0.72 -0.6 391,535 + HMPREF1058_RS06815 0.85 +0.1 391,572 + HMPREF1058_RS06815 0.89 +0.4
Or see this region's nucleotide sequence