Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03260

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03265 and HMPREF1058_RS03260 are separated by 78 nucleotidesHMPREF1058_RS03260 and HMPREF1058_RS03255 are separated by 112 nucleotides HMPREF1058_RS03265: HMPREF1058_RS03265 - 2-iminoacetate synthase ThiH, at 318,135 to 319,265 _RS03265 HMPREF1058_RS03260: HMPREF1058_RS03260 - HesA/MoeB/ThiF family protein, at 319,344 to 320,036 _RS03260 HMPREF1058_RS03255: HMPREF1058_RS03255 - glutathionylspermidine synthase family protein, at 320,149 to 321,273 _RS03255 Position (kb) 319 320 321Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 318.367 kb on - strand, within HMPREF1058_RS03265at 318.367 kb on - strand, within HMPREF1058_RS03265at 318.368 kb on + strand, within HMPREF1058_RS03265at 318.399 kb on + strand, within HMPREF1058_RS03265at 318.434 kb on + strand, within HMPREF1058_RS03265at 318.469 kb on - strand, within HMPREF1058_RS03265at 318.550 kb on - strand, within HMPREF1058_RS03265at 318.601 kb on + strand, within HMPREF1058_RS03265at 318.607 kb on + strand, within HMPREF1058_RS03265at 318.631 kb on - strand, within HMPREF1058_RS03265at 318.685 kb on - strand, within HMPREF1058_RS03265at 318.701 kb on + strand, within HMPREF1058_RS03265at 318.702 kb on - strand, within HMPREF1058_RS03265at 318.706 kb on + strand, within HMPREF1058_RS03265at 318.706 kb on + strand, within HMPREF1058_RS03265at 318.707 kb on - strand, within HMPREF1058_RS03265at 318.707 kb on - strand, within HMPREF1058_RS03265at 318.708 kb on + strand, within HMPREF1058_RS03265at 318.802 kb on + strand, within HMPREF1058_RS03265at 318.802 kb on + strand, within HMPREF1058_RS03265at 318.856 kb on + strand, within HMPREF1058_RS03265at 318.892 kb on - strand, within HMPREF1058_RS03265at 318.892 kb on - strand, within HMPREF1058_RS03265at 319.012 kb on + strand, within HMPREF1058_RS03265at 319.016 kb on + strand, within HMPREF1058_RS03265at 319.023 kb on + strand, within HMPREF1058_RS03265at 319.069 kb on + strand, within HMPREF1058_RS03265at 319.119 kb on + strand, within HMPREF1058_RS03265at 319.119 kb on + strand, within HMPREF1058_RS03265at 319.120 kb on - strand, within HMPREF1058_RS03265at 319.120 kb on - strand, within HMPREF1058_RS03265at 319.120 kb on - strand, within HMPREF1058_RS03265at 319.121 kb on + strand, within HMPREF1058_RS03265at 319.121 kb on + strand, within HMPREF1058_RS03265at 319.121 kb on + strand, within HMPREF1058_RS03265at 319.122 kb on - strand, within HMPREF1058_RS03265at 319.167 kb on - strandat 319.259 kb on - strandat 319.263 kb on + strandat 319.298 kb on + strandat 319.300 kb on + strandat 319.300 kb on + strandat 319.301 kb on - strandat 319.424 kb on + strand, within HMPREF1058_RS03260at 319.425 kb on - strand, within HMPREF1058_RS03260at 319.483 kb on + strand, within HMPREF1058_RS03260at 319.516 kb on + strand, within HMPREF1058_RS03260at 319.621 kb on + strand, within HMPREF1058_RS03260at 319.683 kb on + strand, within HMPREF1058_RS03260at 319.696 kb on + strand, within HMPREF1058_RS03260at 319.697 kb on - strandat 319.730 kb on + strand, within HMPREF1058_RS03260at 319.731 kb on - strand, within HMPREF1058_RS03260at 319.739 kb on + strand, within HMPREF1058_RS03260at 319.740 kb on - strand, within HMPREF1058_RS03260at 319.768 kb on + strand, within HMPREF1058_RS03260at 319.768 kb on + strand, within HMPREF1058_RS03260at 319.769 kb on - strand, within HMPREF1058_RS03260at 319.770 kb on + strand, within HMPREF1058_RS03260at 319.770 kb on + strand, within HMPREF1058_RS03260at 319.898 kb on - strand, within HMPREF1058_RS03260at 319.919 kb on - strand, within HMPREF1058_RS03260at 319.919 kb on - strand, within HMPREF1058_RS03260at 319.919 kb on - strand, within HMPREF1058_RS03260at 319.919 kb on - strand, within HMPREF1058_RS03260at 319.952 kb on + strand, within HMPREF1058_RS03260at 319.962 kb on + strand, within HMPREF1058_RS03260at 319.987 kb on + strandat 320.002 kb on + strandat 320.068 kb on + strandat 320.160 kb on + strandat 320.160 kb on + strandat 320.160 kb on + strandat 320.161 kb on - strandat 320.161 kb on - strandat 320.161 kb on - strandat 320.239 kb on + strandat 320.306 kb on - strand, within HMPREF1058_RS03255at 320.306 kb on - strand, within HMPREF1058_RS03255at 320.306 kb on - strand, within HMPREF1058_RS03255at 320.310 kb on - strand, within HMPREF1058_RS03255at 320.323 kb on - strand, within HMPREF1058_RS03255at 320.325 kb on - strand, within HMPREF1058_RS03255at 320.346 kb on + strand, within HMPREF1058_RS03255at 320.347 kb on - strand, within HMPREF1058_RS03255at 320.350 kb on + strand, within HMPREF1058_RS03255at 320.351 kb on - strand, within HMPREF1058_RS03255at 320.629 kb on + strand, within HMPREF1058_RS03255at 320.629 kb on + strand, within HMPREF1058_RS03255at 320.732 kb on + strand, within HMPREF1058_RS03255at 320.839 kb on - strand, within HMPREF1058_RS03255at 320.839 kb on - strand, within HMPREF1058_RS03255at 320.923 kb on - strand, within HMPREF1058_RS03255at 320.923 kb on - strand, within HMPREF1058_RS03255at 320.968 kb on + strand, within HMPREF1058_RS03255at 320.969 kb on - strand, within HMPREF1058_RS03255at 320.969 kb on - strand, within HMPREF1058_RS03255

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Per-strain Table

Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
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318,367 - HMPREF1058_RS03265 0.21 -3.0
318,367 - HMPREF1058_RS03265 0.21 -1.6
318,368 + HMPREF1058_RS03265 0.21 -3.0
318,399 + HMPREF1058_RS03265 0.23 -1.1
318,434 + HMPREF1058_RS03265 0.26 -2.5
318,469 - HMPREF1058_RS03265 0.30 -3.1
318,550 - HMPREF1058_RS03265 0.37 -0.8
318,601 + HMPREF1058_RS03265 0.41 +0.7
318,607 + HMPREF1058_RS03265 0.42 -0.0
318,631 - HMPREF1058_RS03265 0.44 -2.9
318,685 - HMPREF1058_RS03265 0.49 -2.2
318,701 + HMPREF1058_RS03265 0.50 -2.3
318,702 - HMPREF1058_RS03265 0.50 -3.2
318,706 + HMPREF1058_RS03265 0.50 -1.5
318,706 + HMPREF1058_RS03265 0.50 -3.2
318,707 - HMPREF1058_RS03265 0.51 -2.1
318,707 - HMPREF1058_RS03265 0.51 -1.7
318,708 + HMPREF1058_RS03265 0.51 -1.3
318,802 + HMPREF1058_RS03265 0.59 -3.8
318,802 + HMPREF1058_RS03265 0.59 -2.0
318,856 + HMPREF1058_RS03265 0.64 -1.5
318,892 - HMPREF1058_RS03265 0.67 -2.0
318,892 - HMPREF1058_RS03265 0.67 -1.5
319,012 + HMPREF1058_RS03265 0.78 -3.3
319,016 + HMPREF1058_RS03265 0.78 -2.7
319,023 + HMPREF1058_RS03265 0.79 -1.5
319,069 + HMPREF1058_RS03265 0.83 -2.0
319,119 + HMPREF1058_RS03265 0.87 -1.3
319,119 + HMPREF1058_RS03265 0.87 -1.1
319,120 - HMPREF1058_RS03265 0.87 +0.1
319,120 - HMPREF1058_RS03265 0.87 -3.2
319,120 - HMPREF1058_RS03265 0.87 -1.5
319,121 + HMPREF1058_RS03265 0.87 -2.5
319,121 + HMPREF1058_RS03265 0.87 -1.1
319,121 + HMPREF1058_RS03265 0.87 -1.3
319,122 - HMPREF1058_RS03265 0.87 -1.7
319,167 - -1.5
319,259 - -1.3
319,263 + +0.4
319,298 + +0.3
319,300 + -0.3
319,300 + +0.3
319,301 - -2.7
319,424 + HMPREF1058_RS03260 0.12 -0.7
319,425 - HMPREF1058_RS03260 0.12 -0.8
319,483 + HMPREF1058_RS03260 0.20 -1.1
319,516 + HMPREF1058_RS03260 0.25 -3.5
319,621 + HMPREF1058_RS03260 0.40 -0.9
319,683 + HMPREF1058_RS03260 0.49 -1.6
319,696 + HMPREF1058_RS03260 0.51 -0.7
319,697 - -0.9
319,730 + HMPREF1058_RS03260 0.56 -2.4
319,731 - HMPREF1058_RS03260 0.56 -2.7
319,739 + HMPREF1058_RS03260 0.57 +0.1
319,740 - HMPREF1058_RS03260 0.57 -0.4
319,768 + HMPREF1058_RS03260 0.61 -2.4
319,768 + HMPREF1058_RS03260 0.61 -1.4
319,769 - HMPREF1058_RS03260 0.61 -1.9
319,770 + HMPREF1058_RS03260 0.61 -1.8
319,770 + HMPREF1058_RS03260 0.61 -0.1
319,898 - HMPREF1058_RS03260 0.80 -1.6
319,919 - HMPREF1058_RS03260 0.83 -1.0
319,919 - HMPREF1058_RS03260 0.83 -1.7
319,919 - HMPREF1058_RS03260 0.83 -1.8
319,919 - HMPREF1058_RS03260 0.83 -1.8
319,952 + HMPREF1058_RS03260 0.88 -1.5
319,962 + HMPREF1058_RS03260 0.89 -2.8
319,987 + -3.3
320,002 + -1.2
320,068 + -1.6
320,160 + -0.0
320,160 + -0.2
320,160 + -0.3
320,161 - -0.2
320,161 - +1.0
320,161 - -2.0
320,239 + -0.3
320,306 - HMPREF1058_RS03255 0.14 +0.0
320,306 - HMPREF1058_RS03255 0.14 -0.1
320,306 - HMPREF1058_RS03255 0.14 -0.0
320,310 - HMPREF1058_RS03255 0.14 +1.1
320,323 - HMPREF1058_RS03255 0.15 +0.7
320,325 - HMPREF1058_RS03255 0.16 +0.9
320,346 + HMPREF1058_RS03255 0.18 -0.1
320,347 - HMPREF1058_RS03255 0.18 +0.5
320,350 + HMPREF1058_RS03255 0.18 +0.1
320,351 - HMPREF1058_RS03255 0.18 +0.3
320,629 + HMPREF1058_RS03255 0.43 -0.1
320,629 + HMPREF1058_RS03255 0.43 -0.7
320,732 + HMPREF1058_RS03255 0.52 +0.2
320,839 - HMPREF1058_RS03255 0.61 +0.6
320,839 - HMPREF1058_RS03255 0.61 -0.8
320,923 - HMPREF1058_RS03255 0.69 +0.8
320,923 - HMPREF1058_RS03255 0.69 +0.4
320,968 + HMPREF1058_RS03255 0.73 +0.4
320,969 - HMPREF1058_RS03255 0.73 -0.8
320,969 - HMPREF1058_RS03255 0.73 +0.2

Or see this region's nucleotide sequence