Experiment: Citric Acid 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.615.1 and Xcc-8004.616.1 overlap by 4 nucleotides Xcc-8004.616.1 and Xcc-8004.618.1 are separated by 145 nucleotides Xcc-8004.618.1 and Xcc-8004.619.1 are separated by 123 nucleotides
Xcc-8004.615.1: Xcc-8004.615.1 - Putative DNA-binding protein in cluster with Type I restriction-modification system, at 568,481 to 569,491
Xcc-8004.615.1
Xcc-8004.616.1: Xcc-8004.616.1 - Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72), at 569,488 to 571,104
Xcc-8004.616.1
Xcc-8004.618.1: Xcc-8004.618.1 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 571,250 to 571,828
Xcc-8004.618.1
Xcc-8004.619.1: Xcc-8004.619.1 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 571,952 to 572,584
Xcc-8004.619.1
Position (kb) 569
570
571
572 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 568.979 kb on + strand, within Xcc-8004.615.1 at 568.980 kb on - strand, within Xcc-8004.615.1 at 569.039 kb on + strand, within Xcc-8004.615.1 at 569.039 kb on + strand, within Xcc-8004.615.1 at 569.039 kb on + strand, within Xcc-8004.615.1 at 569.040 kb on - strand, within Xcc-8004.615.1 at 569.168 kb on + strand, within Xcc-8004.615.1 at 569.300 kb on - strand, within Xcc-8004.615.1 at 569.300 kb on - strand, within Xcc-8004.615.1 at 569.314 kb on - strand, within Xcc-8004.615.1 at 569.378 kb on + strand, within Xcc-8004.615.1 at 569.378 kb on + strand, within Xcc-8004.615.1 at 569.623 kb on + strand at 569.623 kb on + strand at 569.624 kb on - strand at 569.683 kb on - strand, within Xcc-8004.616.1 at 569.713 kb on + strand, within Xcc-8004.616.1 at 569.736 kb on - strand, within Xcc-8004.616.1 at 569.774 kb on - strand, within Xcc-8004.616.1 at 569.774 kb on - strand, within Xcc-8004.616.1 at 569.792 kb on - strand, within Xcc-8004.616.1 at 569.792 kb on - strand, within Xcc-8004.616.1 at 569.805 kb on + strand, within Xcc-8004.616.1 at 569.852 kb on + strand, within Xcc-8004.616.1 at 569.853 kb on - strand, within Xcc-8004.616.1 at 569.853 kb on - strand, within Xcc-8004.616.1 at 570.046 kb on + strand, within Xcc-8004.616.1 at 570.046 kb on + strand, within Xcc-8004.616.1 at 570.046 kb on + strand, within Xcc-8004.616.1 at 570.103 kb on + strand, within Xcc-8004.616.1 at 570.105 kb on + strand, within Xcc-8004.616.1 at 570.249 kb on + strand, within Xcc-8004.616.1 at 570.249 kb on + strand, within Xcc-8004.616.1 at 570.283 kb on + strand, within Xcc-8004.616.1 at 570.284 kb on - strand, within Xcc-8004.616.1 at 570.284 kb on - strand, within Xcc-8004.616.1 at 570.371 kb on - strand, within Xcc-8004.616.1 at 570.580 kb on + strand, within Xcc-8004.616.1 at 570.669 kb on - strand, within Xcc-8004.616.1 at 570.685 kb on - strand, within Xcc-8004.616.1 at 570.740 kb on + strand, within Xcc-8004.616.1 at 570.814 kb on - strand, within Xcc-8004.616.1 at 570.899 kb on - strand, within Xcc-8004.616.1 at 570.940 kb on + strand, within Xcc-8004.616.1 at 570.940 kb on + strand, within Xcc-8004.616.1 at 570.940 kb on + strand, within Xcc-8004.616.1 at 570.951 kb on + strand at 570.951 kb on + strand at 570.961 kb on + strand at 570.962 kb on - strand at 571.156 kb on - strand at 571.263 kb on + strand at 571.267 kb on + strand at 571.268 kb on - strand at 571.268 kb on - strand at 571.271 kb on + strand at 571.272 kb on - strand at 571.272 kb on - strand at 571.286 kb on + strand at 571.286 kb on + strand at 571.287 kb on - strand at 571.287 kb on - strand at 571.287 kb on - strand at 571.302 kb on - strand at 571.514 kb on + strand, within Xcc-8004.618.1 at 571.613 kb on + strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.628 kb on + strand, within Xcc-8004.618.1 at 571.928 kb on + strand at 571.928 kb on + strand at 571.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 10mM (C) remove 568,979 + Xcc-8004.615.1 0.49 +0.8 568,980 - Xcc-8004.615.1 0.49 -0.3 569,039 + Xcc-8004.615.1 0.55 +1.6 569,039 + Xcc-8004.615.1 0.55 -0.3 569,039 + Xcc-8004.615.1 0.55 +0.8 569,040 - Xcc-8004.615.1 0.55 +0.6 569,168 + Xcc-8004.615.1 0.68 +0.1 569,300 - Xcc-8004.615.1 0.81 +0.8 569,300 - Xcc-8004.615.1 0.81 -0.6 569,314 - Xcc-8004.615.1 0.82 -0.6 569,378 + Xcc-8004.615.1 0.89 -0.4 569,378 + Xcc-8004.615.1 0.89 -1.2 569,623 + +1.3 569,623 + +0.7 569,624 - -0.2 569,683 - Xcc-8004.616.1 0.12 -0.1 569,713 + Xcc-8004.616.1 0.14 +0.5 569,736 - Xcc-8004.616.1 0.15 -0.1 569,774 - Xcc-8004.616.1 0.18 -0.6 569,774 - Xcc-8004.616.1 0.18 +0.7 569,792 - Xcc-8004.616.1 0.19 +1.6 569,792 - Xcc-8004.616.1 0.19 +0.8 569,805 + Xcc-8004.616.1 0.20 +1.1 569,852 + Xcc-8004.616.1 0.23 -0.1 569,853 - Xcc-8004.616.1 0.23 -0.4 569,853 - Xcc-8004.616.1 0.23 +0.6 570,046 + Xcc-8004.616.1 0.35 +0.2 570,046 + Xcc-8004.616.1 0.35 +0.1 570,046 + Xcc-8004.616.1 0.35 +0.8 570,103 + Xcc-8004.616.1 0.38 +0.1 570,105 + Xcc-8004.616.1 0.38 +1.1 570,249 + Xcc-8004.616.1 0.47 +2.8 570,249 + Xcc-8004.616.1 0.47 +3.8 570,283 + Xcc-8004.616.1 0.49 +0.1 570,284 - Xcc-8004.616.1 0.49 -0.4 570,284 - Xcc-8004.616.1 0.49 +1.1 570,371 - Xcc-8004.616.1 0.55 +0.7 570,580 + Xcc-8004.616.1 0.68 -0.5 570,669 - Xcc-8004.616.1 0.73 -1.4 570,685 - Xcc-8004.616.1 0.74 -1.0 570,740 + Xcc-8004.616.1 0.77 +0.9 570,814 - Xcc-8004.616.1 0.82 -0.3 570,899 - Xcc-8004.616.1 0.87 -0.9 570,940 + Xcc-8004.616.1 0.90 +1.8 570,940 + Xcc-8004.616.1 0.90 +0.7 570,940 + Xcc-8004.616.1 0.90 +1.4 570,951 + -1.3 570,951 + +0.6 570,961 + +2.2 570,962 - -2.4 571,156 - -1.9 571,263 + -0.5 571,267 + -2.5 571,268 - -4.8 571,268 - -2.7 571,271 + -2.6 571,272 - -3.1 571,272 - -3.9 571,286 + -4.0 571,286 + -2.0 571,287 - -1.7 571,287 - -0.6 571,287 - -0.2 571,302 - -3.9 571,514 + Xcc-8004.618.1 0.46 -1.6 571,613 + Xcc-8004.618.1 0.63 -2.7 571,614 - Xcc-8004.618.1 0.63 -0.7 571,614 - Xcc-8004.618.1 0.63 -1.7 571,614 - Xcc-8004.618.1 0.63 -0.5 571,628 + Xcc-8004.618.1 0.65 -3.9 571,928 + +1.4 571,928 + +1.5 571,929 - -1.5
Or see this region's nucleotide sequence