Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2333.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2332.1 and Xcc-8004.2333.1 are separated by 15 nucleotidesXcc-8004.2333.1 and Xcc-8004.2334.1 are separated by 69 nucleotides Xcc-8004.2332.1: Xcc-8004.2332.1 - Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-), at 2,278,737 to 2,279,888 Xcc-8004.2332.1 Xcc-8004.2333.1: Xcc-8004.2333.1 - Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-), at 2,279,904 to 2,281,496 Xcc-8004.2333.1 Xcc-8004.2334.1: Xcc-8004.2334.1 - Transport ATP-binding protein CydD, at 2,281,566 to 2,283,389 Xcc-8004.2334.1 Position (kb) 2279 2280 2281 2282Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2279.098 kb on + strand, within Xcc-8004.2332.1at 2279.098 kb on + strand, within Xcc-8004.2332.1at 2279.098 kb on + strand, within Xcc-8004.2332.1at 2279.098 kb on + strand, within Xcc-8004.2332.1at 2279.098 kb on + strand, within Xcc-8004.2332.1at 2279.099 kb on - strand, within Xcc-8004.2332.1at 2279.191 kb on + strand, within Xcc-8004.2332.1at 2279.192 kb on - strand, within Xcc-8004.2332.1at 2279.192 kb on - strand, within Xcc-8004.2332.1at 2279.192 kb on - strand, within Xcc-8004.2332.1at 2279.192 kb on - strand, within Xcc-8004.2332.1at 2279.192 kb on - strand, within Xcc-8004.2332.1at 2279.269 kb on + strand, within Xcc-8004.2332.1at 2279.399 kb on + strand, within Xcc-8004.2332.1at 2279.399 kb on + strand, within Xcc-8004.2332.1at 2279.407 kb on + strand, within Xcc-8004.2332.1at 2279.408 kb on - strand, within Xcc-8004.2332.1at 2279.408 kb on - strand, within Xcc-8004.2332.1at 2279.408 kb on - strand, within Xcc-8004.2332.1at 2279.547 kb on + strand, within Xcc-8004.2332.1at 2279.560 kb on + strand, within Xcc-8004.2332.1at 2279.618 kb on - strand, within Xcc-8004.2332.1at 2279.641 kb on + strand, within Xcc-8004.2332.1at 2279.641 kb on + strand, within Xcc-8004.2332.1at 2279.641 kb on + strand, within Xcc-8004.2332.1at 2279.641 kb on + strand, within Xcc-8004.2332.1at 2279.641 kb on + strand, within Xcc-8004.2332.1at 2279.641 kb on + strand, within Xcc-8004.2332.1at 2279.642 kb on - strand, within Xcc-8004.2332.1at 2279.642 kb on - strand, within Xcc-8004.2332.1at 2279.642 kb on - strand, within Xcc-8004.2332.1at 2279.642 kb on - strand, within Xcc-8004.2332.1at 2279.642 kb on - strand, within Xcc-8004.2332.1at 2279.838 kb on + strandat 2279.838 kb on + strandat 2279.866 kb on + strandat 2279.866 kb on + strandat 2279.866 kb on + strandat 2279.867 kb on - strandat 2279.867 kb on - strandat 2280.046 kb on + strandat 2280.046 kb on + strandat 2280.046 kb on + strandat 2280.047 kb on - strandat 2280.047 kb on - strandat 2280.047 kb on - strandat 2280.047 kb on - strandat 2280.047 kb on - strandat 2280.109 kb on + strand, within Xcc-8004.2333.1at 2280.109 kb on + strand, within Xcc-8004.2333.1at 2280.110 kb on - strand, within Xcc-8004.2333.1at 2280.110 kb on - strand, within Xcc-8004.2333.1at 2280.110 kb on - strand, within Xcc-8004.2333.1at 2280.155 kb on - strand, within Xcc-8004.2333.1at 2280.155 kb on - strand, within Xcc-8004.2333.1at 2280.295 kb on + strand, within Xcc-8004.2333.1at 2280.295 kb on + strand, within Xcc-8004.2333.1at 2280.295 kb on + strand, within Xcc-8004.2333.1at 2280.295 kb on + strand, within Xcc-8004.2333.1at 2280.295 kb on + strand, within Xcc-8004.2333.1at 2280.295 kb on + strand, within Xcc-8004.2333.1at 2280.295 kb on + strand, within Xcc-8004.2333.1at 2280.295 kb on + strand, within Xcc-8004.2333.1at 2280.296 kb on - strand, within Xcc-8004.2333.1at 2280.296 kb on - strand, within Xcc-8004.2333.1at 2280.296 kb on - strand, within Xcc-8004.2333.1at 2280.296 kb on - strand, within Xcc-8004.2333.1at 2280.296 kb on - strand, within Xcc-8004.2333.1at 2280.296 kb on - strand, within Xcc-8004.2333.1at 2280.296 kb on - strand, within Xcc-8004.2333.1at 2280.362 kb on + strand, within Xcc-8004.2333.1at 2280.362 kb on + strand, within Xcc-8004.2333.1at 2280.363 kb on - strand, within Xcc-8004.2333.1at 2280.363 kb on - strand, within Xcc-8004.2333.1at 2280.363 kb on - strand, within Xcc-8004.2333.1at 2280.363 kb on - strand, within Xcc-8004.2333.1at 2280.517 kb on + strand, within Xcc-8004.2333.1at 2280.622 kb on + strand, within Xcc-8004.2333.1at 2280.623 kb on - strand, within Xcc-8004.2333.1at 2280.641 kb on - strand, within Xcc-8004.2333.1at 2280.763 kb on + strand, within Xcc-8004.2333.1at 2280.764 kb on - strand, within Xcc-8004.2333.1at 2280.764 kb on - strand, within Xcc-8004.2333.1at 2280.916 kb on + strand, within Xcc-8004.2333.1at 2280.916 kb on + strand, within Xcc-8004.2333.1at 2280.917 kb on - strand, within Xcc-8004.2333.1at 2280.917 kb on - strand, within Xcc-8004.2333.1at 2281.231 kb on + strand, within Xcc-8004.2333.1at 2281.231 kb on + strand, within Xcc-8004.2333.1at 2281.231 kb on + strand, within Xcc-8004.2333.1at 2281.231 kb on + strand, within Xcc-8004.2333.1at 2281.231 kb on + strand, within Xcc-8004.2333.1at 2281.232 kb on - strand, within Xcc-8004.2333.1at 2281.232 kb on - strand, within Xcc-8004.2333.1at 2281.232 kb on - strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.243 kb on + strand, within Xcc-8004.2333.1at 2281.244 kb on - strand, within Xcc-8004.2333.1at 2281.244 kb on - strand, within Xcc-8004.2333.1at 2281.372 kb on + strandat 2281.372 kb on + strandat 2281.372 kb on + strandat 2281.373 kb on - strandat 2281.373 kb on - strandat 2281.373 kb on - strandat 2281.373 kb on - strandat 2281.373 kb on - strandat 2281.373 kb on - strandat 2281.438 kb on + strandat 2281.439 kb on - strandat 2281.439 kb on - strandat 2281.439 kb on - strandat 2281.525 kb on - strandat 2281.636 kb on + strandat 2281.636 kb on + strandat 2281.637 kb on - strandat 2282.106 kb on + strand, within Xcc-8004.2334.1at 2282.106 kb on + strand, within Xcc-8004.2334.1at 2282.106 kb on + strand, within Xcc-8004.2334.1at 2282.106 kb on + strand, within Xcc-8004.2334.1at 2282.107 kb on - strand, within Xcc-8004.2334.1at 2282.107 kb on - strand, within Xcc-8004.2334.1at 2282.107 kb on - strand, within Xcc-8004.2334.1at 2282.119 kb on - strand, within Xcc-8004.2334.1at 2282.352 kb on + strand, within Xcc-8004.2334.1at 2282.352 kb on + strand, within Xcc-8004.2334.1at 2282.353 kb on - strand, within Xcc-8004.2334.1at 2282.353 kb on - strand, within Xcc-8004.2334.1at 2282.353 kb on - strand, within Xcc-8004.2334.1at 2282.381 kb on + strand, within Xcc-8004.2334.1at 2282.382 kb on - strand, within Xcc-8004.2334.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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2,279,098 + Xcc-8004.2332.1 0.31 -0.2
2,279,098 + Xcc-8004.2332.1 0.31 -3.0
2,279,098 + Xcc-8004.2332.1 0.31 -1.0
2,279,098 + Xcc-8004.2332.1 0.31 +0.7
2,279,098 + Xcc-8004.2332.1 0.31 -2.0
2,279,099 - Xcc-8004.2332.1 0.31 +0.2
2,279,191 + Xcc-8004.2332.1 0.39 -0.8
2,279,192 - Xcc-8004.2332.1 0.39 -0.6
2,279,192 - Xcc-8004.2332.1 0.39 +0.0
2,279,192 - Xcc-8004.2332.1 0.39 -1.5
2,279,192 - Xcc-8004.2332.1 0.39 -0.1
2,279,192 - Xcc-8004.2332.1 0.39 -3.0
2,279,269 + Xcc-8004.2332.1 0.46 -2.9
2,279,399 + Xcc-8004.2332.1 0.57 -1.6
2,279,399 + Xcc-8004.2332.1 0.57 -3.6
2,279,407 + Xcc-8004.2332.1 0.58 +0.2
2,279,408 - Xcc-8004.2332.1 0.58 -2.0
2,279,408 - Xcc-8004.2332.1 0.58 -2.1
2,279,408 - Xcc-8004.2332.1 0.58 -2.4
2,279,547 + Xcc-8004.2332.1 0.70 -0.2
2,279,560 + Xcc-8004.2332.1 0.71 -1.0
2,279,618 - Xcc-8004.2332.1 0.76 -0.6
2,279,641 + Xcc-8004.2332.1 0.78 -0.8
2,279,641 + Xcc-8004.2332.1 0.78 -0.6
2,279,641 + Xcc-8004.2332.1 0.78 -3.4
2,279,641 + Xcc-8004.2332.1 0.78 -0.9
2,279,641 + Xcc-8004.2332.1 0.78 -2.2
2,279,641 + Xcc-8004.2332.1 0.78 -2.6
2,279,642 - Xcc-8004.2332.1 0.79 -1.1
2,279,642 - Xcc-8004.2332.1 0.79 +0.5
2,279,642 - Xcc-8004.2332.1 0.79 +1.0
2,279,642 - Xcc-8004.2332.1 0.79 -0.8
2,279,642 - Xcc-8004.2332.1 0.79 -1.2
2,279,838 + -2.3
2,279,838 + -2.2
2,279,866 + -2.5
2,279,866 + -1.7
2,279,866 + -0.2
2,279,867 - -0.8
2,279,867 - -0.6
2,280,046 + -1.4
2,280,046 + -1.2
2,280,046 + -2.9
2,280,047 - +0.8
2,280,047 - -2.7
2,280,047 - -2.3
2,280,047 - -1.6
2,280,047 - -1.0
2,280,109 + Xcc-8004.2333.1 0.13 -2.2
2,280,109 + Xcc-8004.2333.1 0.13 -0.2
2,280,110 - Xcc-8004.2333.1 0.13 -0.2
2,280,110 - Xcc-8004.2333.1 0.13 -2.8
2,280,110 - Xcc-8004.2333.1 0.13 -0.7
2,280,155 - Xcc-8004.2333.1 0.16 -0.9
2,280,155 - Xcc-8004.2333.1 0.16 -1.4
2,280,295 + Xcc-8004.2333.1 0.25 -1.3
2,280,295 + Xcc-8004.2333.1 0.25 +0.4
2,280,295 + Xcc-8004.2333.1 0.25 -2.6
2,280,295 + Xcc-8004.2333.1 0.25 -0.9
2,280,295 + Xcc-8004.2333.1 0.25 -3.3
2,280,295 + Xcc-8004.2333.1 0.25 -2.6
2,280,295 + Xcc-8004.2333.1 0.25 -2.4
2,280,295 + Xcc-8004.2333.1 0.25 +0.1
2,280,296 - Xcc-8004.2333.1 0.25 -1.0
2,280,296 - Xcc-8004.2333.1 0.25 +0.2
2,280,296 - Xcc-8004.2333.1 0.25 -0.2
2,280,296 - Xcc-8004.2333.1 0.25 -1.6
2,280,296 - Xcc-8004.2333.1 0.25 -0.4
2,280,296 - Xcc-8004.2333.1 0.25 +1.8
2,280,296 - Xcc-8004.2333.1 0.25 -1.0
2,280,362 + Xcc-8004.2333.1 0.29 -1.8
2,280,362 + Xcc-8004.2333.1 0.29 -0.3
2,280,363 - Xcc-8004.2333.1 0.29 -1.2
2,280,363 - Xcc-8004.2333.1 0.29 -1.0
2,280,363 - Xcc-8004.2333.1 0.29 -1.2
2,280,363 - Xcc-8004.2333.1 0.29 +1.1
2,280,517 + Xcc-8004.2333.1 0.38 -2.2
2,280,622 + Xcc-8004.2333.1 0.45 -1.8
2,280,623 - Xcc-8004.2333.1 0.45 -1.2
2,280,641 - Xcc-8004.2333.1 0.46 -2.9
2,280,763 + Xcc-8004.2333.1 0.54 -0.6
2,280,764 - Xcc-8004.2333.1 0.54 -1.2
2,280,764 - Xcc-8004.2333.1 0.54 -0.2
2,280,916 + Xcc-8004.2333.1 0.64 -1.4
2,280,916 + Xcc-8004.2333.1 0.64 -0.8
2,280,917 - Xcc-8004.2333.1 0.64 -0.2
2,280,917 - Xcc-8004.2333.1 0.64 -0.2
2,281,231 + Xcc-8004.2333.1 0.83 -2.8
2,281,231 + Xcc-8004.2333.1 0.83 -1.3
2,281,231 + Xcc-8004.2333.1 0.83 -1.8
2,281,231 + Xcc-8004.2333.1 0.83 -2.9
2,281,231 + Xcc-8004.2333.1 0.83 -2.4
2,281,232 - Xcc-8004.2333.1 0.83 -3.1
2,281,232 - Xcc-8004.2333.1 0.83 -3.2
2,281,232 - Xcc-8004.2333.1 0.83 -2.7
2,281,240 + Xcc-8004.2333.1 0.84 -2.8
2,281,240 + Xcc-8004.2333.1 0.84 -1.4
2,281,240 + Xcc-8004.2333.1 0.84 -1.6
2,281,240 + Xcc-8004.2333.1 0.84 +0.8
2,281,240 + Xcc-8004.2333.1 0.84 -3.4
2,281,240 + Xcc-8004.2333.1 0.84 -1.4
2,281,240 + Xcc-8004.2333.1 0.84 -0.6
2,281,240 + Xcc-8004.2333.1 0.84 -3.5
2,281,240 + Xcc-8004.2333.1 0.84 +0.8
2,281,241 - Xcc-8004.2333.1 0.84 -0.6
2,281,241 - Xcc-8004.2333.1 0.84 -2.5
2,281,241 - Xcc-8004.2333.1 0.84 -1.4
2,281,241 - Xcc-8004.2333.1 0.84 +0.3
2,281,241 - Xcc-8004.2333.1 0.84 -3.0
2,281,241 - Xcc-8004.2333.1 0.84 -0.8
2,281,243 + Xcc-8004.2333.1 0.84 -2.3
2,281,244 - Xcc-8004.2333.1 0.84 -2.8
2,281,244 - Xcc-8004.2333.1 0.84 -2.5
2,281,372 + +0.4
2,281,372 + -2.4
2,281,372 + -1.8
2,281,373 - -1.1
2,281,373 - -2.5
2,281,373 - -0.6
2,281,373 - -0.8
2,281,373 - -1.3
2,281,373 - -1.6
2,281,438 + +0.3
2,281,439 - +0.3
2,281,439 - -2.1
2,281,439 - -2.3
2,281,525 - -0.5
2,281,636 + +1.8
2,281,636 + -0.4
2,281,637 - +0.5
2,282,106 + Xcc-8004.2334.1 0.30 -3.6
2,282,106 + Xcc-8004.2334.1 0.30 -2.0
2,282,106 + Xcc-8004.2334.1 0.30 -1.1
2,282,106 + Xcc-8004.2334.1 0.30 -2.5
2,282,107 - Xcc-8004.2334.1 0.30 -0.4
2,282,107 - Xcc-8004.2334.1 0.30 -2.5
2,282,107 - Xcc-8004.2334.1 0.30 -1.7
2,282,119 - Xcc-8004.2334.1 0.30 -3.0
2,282,352 + Xcc-8004.2334.1 0.43 -0.7
2,282,352 + Xcc-8004.2334.1 0.43 -3.0
2,282,353 - Xcc-8004.2334.1 0.43 -1.4
2,282,353 - Xcc-8004.2334.1 0.43 -2.3
2,282,353 - Xcc-8004.2334.1 0.43 -1.8
2,282,381 + Xcc-8004.2334.1 0.45 -1.7
2,282,382 - Xcc-8004.2334.1 0.45 -1.3

Or see this region's nucleotide sequence