Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.987.1 and Xcc-8004.988.1 are separated by 122 nucleotides Xcc-8004.988.1 and Xcc-8004.989.1 overlap by 4 nucleotides Xcc-8004.989.1 and Xcc-8004.990.1 are separated by 130 nucleotides Xcc-8004.990.1 and Xcc-8004.991.1 are separated by 98 nucleotides
Xcc-8004.987.1: Xcc-8004.987.1 - hypothetical protein, at 936,331 to 936,711
Xcc-8004.987.1
Xcc-8004.988.1: Xcc-8004.988.1 - Phenazine biosynthesis protein PhzF like, at 936,834 to 937,625
Xcc-8004.988.1
Xcc-8004.989.1: Xcc-8004.989.1 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 937,622 to 938,545
Xcc-8004.989.1
Xcc-8004.990.1: Xcc-8004.990.1 - FIG01210796: hypothetical protein, at 938,676 to 939,014
Xcc-8004.990.1
Xcc-8004.991.1: Xcc-8004.991.1 - hypothetical protein, at 939,113 to 940,057
Xcc-8004.991.1
Position (kb) 937
938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 936.701 kb on + strand at 936.702 kb on - strand at 936.732 kb on + strand at 936.733 kb on - strand at 936.747 kb on - strand at 936.751 kb on + strand at 936.866 kb on + strand at 936.867 kb on - strand at 937.074 kb on + strand, within Xcc-8004.988.1 at 937.075 kb on - strand, within Xcc-8004.988.1 at 937.075 kb on - strand, within Xcc-8004.988.1 at 937.166 kb on + strand, within Xcc-8004.988.1 at 937.167 kb on - strand, within Xcc-8004.988.1 at 937.167 kb on - strand, within Xcc-8004.988.1 at 937.263 kb on + strand, within Xcc-8004.988.1 at 937.263 kb on + strand, within Xcc-8004.988.1 at 937.264 kb on - strand, within Xcc-8004.988.1 at 937.281 kb on + strand, within Xcc-8004.988.1 at 937.293 kb on + strand, within Xcc-8004.988.1 at 937.575 kb on + strand at 937.575 kb on + strand at 937.575 kb on + strand at 937.576 kb on - strand at 937.579 kb on + strand at 937.599 kb on + strand at 937.757 kb on + strand, within Xcc-8004.989.1 at 937.786 kb on + strand, within Xcc-8004.989.1 at 937.786 kb on + strand, within Xcc-8004.989.1 at 937.787 kb on - strand, within Xcc-8004.989.1 at 937.943 kb on + strand, within Xcc-8004.989.1 at 938.096 kb on + strand, within Xcc-8004.989.1 at 938.097 kb on - strand, within Xcc-8004.989.1 at 938.311 kb on + strand, within Xcc-8004.989.1 at 938.330 kb on + strand, within Xcc-8004.989.1 at 938.339 kb on + strand, within Xcc-8004.989.1 at 938.420 kb on + strand, within Xcc-8004.989.1 at 938.421 kb on - strand, within Xcc-8004.989.1 at 938.421 kb on - strand, within Xcc-8004.989.1 at 938.476 kb on + strand at 938.723 kb on + strand, within Xcc-8004.990.1 at 938.723 kb on + strand, within Xcc-8004.990.1 at 938.723 kb on + strand, within Xcc-8004.990.1 at 938.723 kb on + strand, within Xcc-8004.990.1 at 938.723 kb on + strand, within Xcc-8004.990.1 at 938.723 kb on + strand, within Xcc-8004.990.1 at 938.724 kb on - strand, within Xcc-8004.990.1 at 938.724 kb on - strand, within Xcc-8004.990.1 at 938.724 kb on - strand, within Xcc-8004.990.1 at 939.001 kb on + strand at 939.001 kb on + strand at 939.001 kb on + strand at 939.049 kb on + strand at 939.049 kb on + strand at 939.049 kb on + strand at 939.050 kb on - strand at 939.050 kb on - strand at 939.114 kb on + strand at 939.114 kb on + strand at 939.292 kb on - strand, within Xcc-8004.991.1 at 939.302 kb on + strand, within Xcc-8004.991.1 at 939.303 kb on - strand, within Xcc-8004.991.1 at 939.513 kb on + strand, within Xcc-8004.991.1 at 939.513 kb on + strand, within Xcc-8004.991.1 at 939.513 kb on + strand, within Xcc-8004.991.1 at 939.514 kb on - strand, within Xcc-8004.991.1 at 939.516 kb on + strand, within Xcc-8004.991.1 at 939.517 kb on - strand, within Xcc-8004.991.1 at 939.537 kb on + strand, within Xcc-8004.991.1 at 939.537 kb on + strand, within Xcc-8004.991.1 at 939.538 kb on - strand, within Xcc-8004.991.1 at 939.543 kb on + strand, within Xcc-8004.991.1 at 939.543 kb on + strand, within Xcc-8004.991.1 at 939.543 kb on + strand, within Xcc-8004.991.1 at 939.544 kb on - strand, within Xcc-8004.991.1 at 939.544 kb on - strand, within Xcc-8004.991.1 at 939.544 kb on - strand, within Xcc-8004.991.1 at 939.544 kb on - strand, within Xcc-8004.991.1 at 939.544 kb on - strand, within Xcc-8004.991.1 at 939.544 kb on - strand, within Xcc-8004.991.1 at 939.544 kb on - strand, within Xcc-8004.991.1 at 939.544 kb on - strand, within Xcc-8004.991.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 936,701 + -0.8 936,702 - -1.4 936,732 + -0.1 936,733 - -0.1 936,747 - -1.0 936,751 + +0.9 936,866 + -0.8 936,867 - -0.7 937,074 + Xcc-8004.988.1 0.30 +0.9 937,075 - Xcc-8004.988.1 0.30 -2.5 937,075 - Xcc-8004.988.1 0.30 -0.2 937,166 + Xcc-8004.988.1 0.42 +1.5 937,167 - Xcc-8004.988.1 0.42 -1.1 937,167 - Xcc-8004.988.1 0.42 -1.2 937,263 + Xcc-8004.988.1 0.54 +0.9 937,263 + Xcc-8004.988.1 0.54 -2.0 937,264 - Xcc-8004.988.1 0.54 -3.5 937,281 + Xcc-8004.988.1 0.56 -2.1 937,293 + Xcc-8004.988.1 0.58 +1.9 937,575 + -0.4 937,575 + -1.6 937,575 + -0.5 937,576 - +0.1 937,579 + -1.4 937,599 + +1.3 937,757 + Xcc-8004.989.1 0.15 +2.3 937,786 + Xcc-8004.989.1 0.18 +0.3 937,786 + Xcc-8004.989.1 0.18 -0.3 937,787 - Xcc-8004.989.1 0.18 +2.0 937,943 + Xcc-8004.989.1 0.35 -0.3 938,096 + Xcc-8004.989.1 0.51 +0.7 938,097 - Xcc-8004.989.1 0.51 +1.5 938,311 + Xcc-8004.989.1 0.75 +0.1 938,330 + Xcc-8004.989.1 0.77 -0.3 938,339 + Xcc-8004.989.1 0.78 +0.6 938,420 + Xcc-8004.989.1 0.86 +0.5 938,421 - Xcc-8004.989.1 0.86 -0.7 938,421 - Xcc-8004.989.1 0.86 +1.3 938,476 + +0.4 938,723 + Xcc-8004.990.1 0.14 -1.0 938,723 + Xcc-8004.990.1 0.14 +1.6 938,723 + Xcc-8004.990.1 0.14 +0.6 938,723 + Xcc-8004.990.1 0.14 +1.5 938,723 + Xcc-8004.990.1 0.14 +1.7 938,723 + Xcc-8004.990.1 0.14 +0.2 938,724 - Xcc-8004.990.1 0.14 +0.7 938,724 - Xcc-8004.990.1 0.14 +0.0 938,724 - Xcc-8004.990.1 0.14 -0.7 939,001 + -1.7 939,001 + +2.1 939,001 + -1.5 939,049 + +1.3 939,049 + +0.9 939,049 + -0.3 939,050 - -1.3 939,050 - -3.5 939,114 + -0.0 939,114 + -0.7 939,292 - Xcc-8004.991.1 0.19 +0.6 939,302 + Xcc-8004.991.1 0.20 +0.3 939,303 - Xcc-8004.991.1 0.20 +0.5 939,513 + Xcc-8004.991.1 0.42 +0.8 939,513 + Xcc-8004.991.1 0.42 +2.3 939,513 + Xcc-8004.991.1 0.42 -0.1 939,514 - Xcc-8004.991.1 0.42 -0.3 939,516 + Xcc-8004.991.1 0.43 +0.6 939,517 - Xcc-8004.991.1 0.43 -1.1 939,537 + Xcc-8004.991.1 0.45 +0.6 939,537 + Xcc-8004.991.1 0.45 +0.7 939,538 - Xcc-8004.991.1 0.45 -1.6 939,543 + Xcc-8004.991.1 0.46 -0.3 939,543 + Xcc-8004.991.1 0.46 +0.5 939,543 + Xcc-8004.991.1 0.46 -1.1 939,544 - Xcc-8004.991.1 0.46 +0.1 939,544 - Xcc-8004.991.1 0.46 +2.1 939,544 - Xcc-8004.991.1 0.46 +1.9 939,544 - Xcc-8004.991.1 0.46 -2.3 939,544 - Xcc-8004.991.1 0.46 -0.3 939,544 - Xcc-8004.991.1 0.46 +1.5 939,544 - Xcc-8004.991.1 0.46 -0.4 939,544 - Xcc-8004.991.1 0.46 -1.8
Or see this region's nucleotide sequence