Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1373.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1372.1 and Xcc-8004.1373.1 are separated by 694 nucleotidesXcc-8004.1373.1 and Xcc-8004.1374.1 are separated by 204 nucleotidesXcc-8004.1374.1 and Xcc-8004.1375.1 are separated by 23 nucleotides Xcc-8004.1372.1: Xcc-8004.1372.1 - Trehalose-6-phosphate phosphatase (EC 3.1.3.12), at 1,299,710 to 1,300,468 Xcc-8004.1372.1 Xcc-8004.1373.1: Xcc-8004.1373.1 - ferric enterobactin receptor, at 1,301,163 to 1,303,598 Xcc-8004.1373.1 Xcc-8004.1374.1: Xcc-8004.1374.1 - Lipoprotein, putative, at 1,303,803 to 1,304,276 Xcc-8004.1374.1 Xcc-8004.1375.1: Xcc-8004.1375.1 - FIG01210071: hypothetical protein, at 1,304,300 to 1,305,172 Xcc-8004.1375.1 Position (kb) 1301 1302 1303 1304Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1300.337 kb on + strand, within Xcc-8004.1372.1at 1300.338 kb on - strand, within Xcc-8004.1372.1at 1300.338 kb on - strand, within Xcc-8004.1372.1at 1300.474 kb on + strandat 1300.474 kb on + strandat 1300.474 kb on + strandat 1300.475 kb on - strandat 1300.475 kb on - strandat 1300.496 kb on + strandat 1300.496 kb on + strandat 1300.497 kb on - strandat 1300.655 kb on + strandat 1300.808 kb on + strandat 1300.962 kb on + strandat 1301.105 kb on - strandat 1301.171 kb on + strandat 1301.173 kb on + strandat 1301.173 kb on + strandat 1301.173 kb on + strandat 1301.188 kb on + strandat 1301.189 kb on - strandat 1301.231 kb on - strandat 1301.249 kb on - strandat 1301.278 kb on + strandat 1301.279 kb on - strandat 1301.371 kb on + strandat 1301.371 kb on + strandat 1301.372 kb on - strandat 1301.372 kb on - strandat 1301.372 kb on - strandat 1301.548 kb on + strand, within Xcc-8004.1373.1at 1301.548 kb on + strand, within Xcc-8004.1373.1at 1301.549 kb on - strand, within Xcc-8004.1373.1at 1301.614 kb on + strand, within Xcc-8004.1373.1at 1301.614 kb on + strand, within Xcc-8004.1373.1at 1301.614 kb on + strand, within Xcc-8004.1373.1at 1301.614 kb on + strand, within Xcc-8004.1373.1at 1301.615 kb on - strand, within Xcc-8004.1373.1at 1301.615 kb on - strand, within Xcc-8004.1373.1at 1301.615 kb on - strand, within Xcc-8004.1373.1at 1301.615 kb on - strand, within Xcc-8004.1373.1at 1301.615 kb on - strand, within Xcc-8004.1373.1at 1301.620 kb on + strand, within Xcc-8004.1373.1at 1301.620 kb on + strand, within Xcc-8004.1373.1at 1301.620 kb on + strand, within Xcc-8004.1373.1at 1301.620 kb on + strand, within Xcc-8004.1373.1at 1301.621 kb on - strand, within Xcc-8004.1373.1at 1301.621 kb on - strand, within Xcc-8004.1373.1at 1301.621 kb on - strand, within Xcc-8004.1373.1at 1301.621 kb on - strand, within Xcc-8004.1373.1at 1301.621 kb on - strand, within Xcc-8004.1373.1at 1301.621 kb on - strand, within Xcc-8004.1373.1at 1301.621 kb on - strand, within Xcc-8004.1373.1at 1301.621 kb on - strand, within Xcc-8004.1373.1at 1301.656 kb on + strand, within Xcc-8004.1373.1at 1301.719 kb on + strand, within Xcc-8004.1373.1at 1301.720 kb on - strand, within Xcc-8004.1373.1at 1301.992 kb on + strand, within Xcc-8004.1373.1at 1302.014 kb on - strand, within Xcc-8004.1373.1at 1302.091 kb on + strand, within Xcc-8004.1373.1at 1302.092 kb on - strand, within Xcc-8004.1373.1at 1302.136 kb on + strand, within Xcc-8004.1373.1at 1302.202 kb on + strand, within Xcc-8004.1373.1at 1302.304 kb on + strand, within Xcc-8004.1373.1at 1302.305 kb on - strand, within Xcc-8004.1373.1at 1302.305 kb on - strand, within Xcc-8004.1373.1at 1302.305 kb on - strand, within Xcc-8004.1373.1at 1302.508 kb on + strand, within Xcc-8004.1373.1at 1302.508 kb on + strand, within Xcc-8004.1373.1at 1302.547 kb on + strand, within Xcc-8004.1373.1at 1302.548 kb on - strand, within Xcc-8004.1373.1at 1302.638 kb on - strand, within Xcc-8004.1373.1at 1302.638 kb on - strand, within Xcc-8004.1373.1at 1302.638 kb on - strand, within Xcc-8004.1373.1at 1302.638 kb on - strand, within Xcc-8004.1373.1at 1302.679 kb on + strand, within Xcc-8004.1373.1at 1302.680 kb on - strand, within Xcc-8004.1373.1at 1302.709 kb on + strand, within Xcc-8004.1373.1at 1302.709 kb on + strand, within Xcc-8004.1373.1at 1302.709 kb on + strand, within Xcc-8004.1373.1at 1302.709 kb on + strand, within Xcc-8004.1373.1at 1302.709 kb on + strand, within Xcc-8004.1373.1at 1302.710 kb on - strand, within Xcc-8004.1373.1at 1302.710 kb on - strand, within Xcc-8004.1373.1at 1302.710 kb on - strand, within Xcc-8004.1373.1at 1302.710 kb on - strand, within Xcc-8004.1373.1at 1302.725 kb on - strand, within Xcc-8004.1373.1at 1302.725 kb on - strand, within Xcc-8004.1373.1at 1302.805 kb on + strand, within Xcc-8004.1373.1at 1302.805 kb on + strand, within Xcc-8004.1373.1at 1302.806 kb on - strand, within Xcc-8004.1373.1at 1302.806 kb on - strand, within Xcc-8004.1373.1at 1302.806 kb on - strand, within Xcc-8004.1373.1at 1302.806 kb on - strand, within Xcc-8004.1373.1at 1302.806 kb on - strand, within Xcc-8004.1373.1at 1302.971 kb on - strand, within Xcc-8004.1373.1at 1302.971 kb on - strand, within Xcc-8004.1373.1at 1303.024 kb on + strand, within Xcc-8004.1373.1at 1303.024 kb on + strand, within Xcc-8004.1373.1at 1303.024 kb on + strand, within Xcc-8004.1373.1at 1303.025 kb on - strand, within Xcc-8004.1373.1at 1303.111 kb on + strand, within Xcc-8004.1373.1at 1303.235 kb on + strand, within Xcc-8004.1373.1at 1303.235 kb on + strand, within Xcc-8004.1373.1at 1303.236 kb on - strand, within Xcc-8004.1373.1at 1303.613 kb on + strandat 1303.614 kb on - strandat 1303.614 kb on - strandat 1303.702 kb on - strandat 1303.704 kb on + strandat 1303.957 kb on - strand, within Xcc-8004.1374.1at 1303.957 kb on - strand, within Xcc-8004.1374.1at 1304.091 kb on + strand, within Xcc-8004.1374.1at 1304.555 kb on + strand, within Xcc-8004.1375.1at 1304.555 kb on + strand, within Xcc-8004.1375.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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1,300,337 + Xcc-8004.1372.1 0.83 +0.3
1,300,338 - Xcc-8004.1372.1 0.83 -1.6
1,300,338 - Xcc-8004.1372.1 0.83 -1.2
1,300,474 + +1.9
1,300,474 + +0.9
1,300,474 + -1.4
1,300,475 - -1.2
1,300,475 - -0.1
1,300,496 + -2.9
1,300,496 + -3.4
1,300,497 - +0.7
1,300,655 + +2.1
1,300,808 + +0.2
1,300,962 + +0.0
1,301,105 - -0.3
1,301,171 + +0.4
1,301,173 + -1.0
1,301,173 + -1.8
1,301,173 + -1.5
1,301,188 + +0.0
1,301,189 - -0.7
1,301,231 - -1.2
1,301,249 - +0.2
1,301,278 + +0.7
1,301,279 - -0.6
1,301,371 + +0.3
1,301,371 + -0.7
1,301,372 - -1.1
1,301,372 - -0.4
1,301,372 - -0.7
1,301,548 + Xcc-8004.1373.1 0.16 -1.1
1,301,548 + Xcc-8004.1373.1 0.16 +0.3
1,301,549 - Xcc-8004.1373.1 0.16 -2.2
1,301,614 + Xcc-8004.1373.1 0.19 +0.3
1,301,614 + Xcc-8004.1373.1 0.19 -1.1
1,301,614 + Xcc-8004.1373.1 0.19 -1.8
1,301,614 + Xcc-8004.1373.1 0.19 -1.3
1,301,615 - Xcc-8004.1373.1 0.19 -0.7
1,301,615 - Xcc-8004.1373.1 0.19 -1.1
1,301,615 - Xcc-8004.1373.1 0.19 +0.0
1,301,615 - Xcc-8004.1373.1 0.19 -1.3
1,301,615 - Xcc-8004.1373.1 0.19 -3.0
1,301,620 + Xcc-8004.1373.1 0.19 -0.5
1,301,620 + Xcc-8004.1373.1 0.19 -2.0
1,301,620 + Xcc-8004.1373.1 0.19 -0.2
1,301,620 + Xcc-8004.1373.1 0.19 +0.3
1,301,621 - Xcc-8004.1373.1 0.19 -0.1
1,301,621 - Xcc-8004.1373.1 0.19 -0.3
1,301,621 - Xcc-8004.1373.1 0.19 -1.0
1,301,621 - Xcc-8004.1373.1 0.19 +0.3
1,301,621 - Xcc-8004.1373.1 0.19 -1.8
1,301,621 - Xcc-8004.1373.1 0.19 -0.2
1,301,621 - Xcc-8004.1373.1 0.19 -0.4
1,301,621 - Xcc-8004.1373.1 0.19 -1.0
1,301,656 + Xcc-8004.1373.1 0.20 -1.0
1,301,719 + Xcc-8004.1373.1 0.23 -1.1
1,301,720 - Xcc-8004.1373.1 0.23 -0.7
1,301,992 + Xcc-8004.1373.1 0.34 -1.1
1,302,014 - Xcc-8004.1373.1 0.35 -0.6
1,302,091 + Xcc-8004.1373.1 0.38 -0.5
1,302,092 - Xcc-8004.1373.1 0.38 -0.9
1,302,136 + Xcc-8004.1373.1 0.40 +0.7
1,302,202 + Xcc-8004.1373.1 0.43 +0.2
1,302,304 + Xcc-8004.1373.1 0.47 +0.3
1,302,305 - Xcc-8004.1373.1 0.47 -0.6
1,302,305 - Xcc-8004.1373.1 0.47 +1.0
1,302,305 - Xcc-8004.1373.1 0.47 -2.4
1,302,508 + Xcc-8004.1373.1 0.55 +1.7
1,302,508 + Xcc-8004.1373.1 0.55 +1.4
1,302,547 + Xcc-8004.1373.1 0.57 +4.3
1,302,548 - Xcc-8004.1373.1 0.57 -0.4
1,302,638 - Xcc-8004.1373.1 0.61 +0.0
1,302,638 - Xcc-8004.1373.1 0.61 -0.8
1,302,638 - Xcc-8004.1373.1 0.61 +1.1
1,302,638 - Xcc-8004.1373.1 0.61 +0.5
1,302,679 + Xcc-8004.1373.1 0.62 +0.8
1,302,680 - Xcc-8004.1373.1 0.62 -1.2
1,302,709 + Xcc-8004.1373.1 0.63 -0.6
1,302,709 + Xcc-8004.1373.1 0.63 -2.0
1,302,709 + Xcc-8004.1373.1 0.63 -0.5
1,302,709 + Xcc-8004.1373.1 0.63 -1.9
1,302,709 + Xcc-8004.1373.1 0.63 -0.8
1,302,710 - Xcc-8004.1373.1 0.64 +1.9
1,302,710 - Xcc-8004.1373.1 0.64 -0.9
1,302,710 - Xcc-8004.1373.1 0.64 +2.3
1,302,710 - Xcc-8004.1373.1 0.64 -1.4
1,302,725 - Xcc-8004.1373.1 0.64 +1.5
1,302,725 - Xcc-8004.1373.1 0.64 -1.8
1,302,805 + Xcc-8004.1373.1 0.67 -0.9
1,302,805 + Xcc-8004.1373.1 0.67 -1.1
1,302,806 - Xcc-8004.1373.1 0.67 -0.7
1,302,806 - Xcc-8004.1373.1 0.67 -1.2
1,302,806 - Xcc-8004.1373.1 0.67 +0.7
1,302,806 - Xcc-8004.1373.1 0.67 +0.6
1,302,806 - Xcc-8004.1373.1 0.67 -0.1
1,302,971 - Xcc-8004.1373.1 0.74 +1.6
1,302,971 - Xcc-8004.1373.1 0.74 -0.7
1,303,024 + Xcc-8004.1373.1 0.76 +0.7
1,303,024 + Xcc-8004.1373.1 0.76 -1.1
1,303,024 + Xcc-8004.1373.1 0.76 -2.1
1,303,025 - Xcc-8004.1373.1 0.76 -0.6
1,303,111 + Xcc-8004.1373.1 0.80 -1.9
1,303,235 + Xcc-8004.1373.1 0.85 -2.1
1,303,235 + Xcc-8004.1373.1 0.85 -2.2
1,303,236 - Xcc-8004.1373.1 0.85 -0.9
1,303,613 + -0.1
1,303,614 - +0.3
1,303,614 - -0.2
1,303,702 - +0.5
1,303,704 + +0.7
1,303,957 - Xcc-8004.1374.1 0.32 -1.3
1,303,957 - Xcc-8004.1374.1 0.32 -0.3
1,304,091 + Xcc-8004.1374.1 0.61 -1.9
1,304,555 + Xcc-8004.1375.1 0.29 -2.0
1,304,555 + Xcc-8004.1375.1 0.29 -1.2

Or see this region's nucleotide sequence