Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.844.1 and Xcc-8004.845.1 overlap by 11 nucleotides Xcc-8004.845.1 and Xcc-8004.846.1 overlap by 4 nucleotides Xcc-8004.846.1 and Xcc-8004.847.1 overlap by 8 nucleotides
Xcc-8004.844.1: Xcc-8004.844.1 - FIG01210600: hypothetical protein, at 796,354 to 796,611
Xcc-8004.844.1
Xcc-8004.845.1: Xcc-8004.845.1 - Diaminopimelate epimerase (EC 5.1.1.7), at 796,601 to 797,455
Xcc-8004.845.1
Xcc-8004.846.1: Xcc-8004.846.1 - Protein of unknown function DUF484, at 797,452 to 798,120
Xcc-8004.846.1
Xcc-8004.847.1: Xcc-8004.847.1 - Site-specific tyrosine recombinase, at 798,113 to 799,081
Xcc-8004.847.1
Position (kb) 797
798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 797.593 kb on + strand, within Xcc-8004.846.1 at 797.948 kb on - strand, within Xcc-8004.846.1 at 797.948 kb on - strand, within Xcc-8004.846.1 at 797.948 kb on - strand, within Xcc-8004.846.1 at 798.025 kb on - strand, within Xcc-8004.846.1 at 798.043 kb on + strand, within Xcc-8004.846.1 at 798.043 kb on + strand, within Xcc-8004.846.1 at 798.057 kb on + strand at 798.057 kb on + strand at 798.057 kb on + strand at 798.058 kb on - strand at 798.429 kb on - strand, within Xcc-8004.847.1 at 798.608 kb on + strand, within Xcc-8004.847.1 at 798.998 kb on + strand at 798.998 kb on + strand at 798.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 797,593 + Xcc-8004.846.1 0.21 -0.6 797,948 - Xcc-8004.846.1 0.74 -3.2 797,948 - Xcc-8004.846.1 0.74 +0.1 797,948 - Xcc-8004.846.1 0.74 -2.8 798,025 - Xcc-8004.846.1 0.86 -1.9 798,043 + Xcc-8004.846.1 0.88 +0.8 798,043 + Xcc-8004.846.1 0.88 -3.1 798,057 + +1.4 798,057 + -0.2 798,057 + +0.3 798,058 - -2.4 798,429 - Xcc-8004.847.1 0.33 -1.4 798,608 + Xcc-8004.847.1 0.51 -1.4 798,998 + -1.2 798,998 + -1.2 798,999 - +0.8
Or see this region's nucleotide sequence